Bhi12G001078 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G001078
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	P-loop NTPase domain-containing protein LPA1 homolog 1-like
Location	chr12: 37792845 .. 37793242 (-)
RNA-Seq Expression	Bhi12G001078
Synteny	Bhi12G001078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGGTAGGTTGAAAAATTATTTTAATTTTCTAAAGAACTTGGCTATTTCTTCTATTAGAAGTATATTTTCTCTTGATCTATTTCTTACCAATACACCGTGTTTAGTAGCTAGACCCGTATATGCAGAGCATGTACATCTTTTTATTTTCTTAAATTTATTTTCTTCAATGTTATCTTGTCTCTTTGGTTCCAGATGACAATTCATGTTTAGAATCCGATGGCCTATTATTCTCTTTCAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

mRNA sequence

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

Coding sequence (CDS)

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

Protein sequence

MRFVTREESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP

Homology

[Close]

BLAST of Bhi12G001078 vs. TAIR 10
Match: AT5G60760.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-07
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDD 53
           ++ +AD  +T S+Y SS  SSPR S+G SKELKED SVHGSDEEV+D
Sbjct: 550 DDCKADMAETSSRYYSSCCSSPRMSEGTSKELKEDQSVHGSDEEVED 596

[Close]

BLAST of Bhi12G001078 vs. TAIR 10
Match: AT3G45090.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 1.8e-04
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDD 53
           ++ RAD  +T S++ SS  SSPR SDGPSKEL E+ SV+GSDE+ ++
Sbjct: 500 DDLRADIIETGSRHYSSCCSSPRTSDGPSKELMEEQSVNGSDEDDEE 546

[Close]

BLAST of Bhi12G001078 vs. TAIR 10
Match: AT3G45090.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 1.8e-04
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDD 53
           ++ RAD  +T S++ SS  SSPR SDGPSKEL E+ SV+GSDE+ ++
Sbjct: 519 DDLRADIIETGSRHYSSCCSSPRTSDGPSKELMEEQSVNGSDEDDEE 565

[Close]

BLAST of Bhi12G001078 vs. ExPASy Swiss-Prot
Match: Q9FJH9 (P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g60760 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-06
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDD 53
           ++ +AD  +T S+Y SS  SSPR S+G SKELKED SVHGSDEEV+D
Sbjct: 550 DDCKADMAETSSRYYSSCCSSPRMSEGTSKELKEDQSVHGSDEEVED 596

[Close]

BLAST of Bhi12G001078 vs. ExPASy Swiss-Prot
Match: B9F4I8 (P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 6.6e-04
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKE-DISVHGSDEEVDDP 54
           ++ RADG +T  +Y SS  SSP+ SD PSKEL E D SV GS+E+ DDP
Sbjct: 556 DDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDP 604

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_038902178.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 533 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 579

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_038902179.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 358 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 404

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_011657017.1 (P-loop NTPase domain-containing protein LPA1 homolog 1 [Cucumis sativus] >KGN46861.1 hypothetical protein Csa_021005 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: KAA0035239.1 (P-loop NTPase domain-containing protein LPA1-like protein 1-like [Cucumis melo var. makuwa] >TYK22394.1 P-loop NTPase domain-containing protein LPA1-like protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_008465362.1 (PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL
Match: A0A5A7T1K7 (P-loop NTPase domain-containing protein LPA1-like protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00180 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL
Match: A0A0A0KGH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147540 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL
Match: A0A1S3CNQ1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103502999 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL
Match: A0A6J1K5Z1 (P-loop NTPase domain-containing protein LPA1 homolog 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491469 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEE DDP
Sbjct: 535 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEADDP 581

[Close]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL
Match: A0A6J1K3X4 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491469 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEE DDP
Sbjct: 419 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEADDP 465

The following BLAST results are available for this feature:

BLAST of Bhi12G001078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60760.1	1.7e-07	63.83	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G45090.2	1.8e-04	55.32	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G45090.1	1.8e-04	55.32	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Bhi12G001078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJH9	2.4e-06	63.83	P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana O...	[more]
B9F4I8	6.6e-04	57.14	P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Bhi12G001078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902178.1	1.3e-12	91.49	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X1 [Benincas...	[more]
XP_038902179.1	1.3e-12	91.49	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Benincas...	[more]
XP_011657017.1	2.8e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 1 [Cucumis sativus] >KGN468...	[more]
KAA0035239.1	2.8e-12	89.36	P-loop NTPase domain-containing protein LPA1-like protein 1-like [Cucumis melo v...	[more]
XP_008465362.1	2.8e-12	89.36	PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1-like [Cucumis ...	[more]

BLAST of Bhi12G001078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1K7	1.4e-12	89.36	P-loop NTPase domain-containing protein LPA1-like protein 1-like OS=Cucumis melo...	[more]
A0A0A0KGH7	1.4e-12	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147540 PE=4 SV=1	[more]
A0A1S3CNQ1	1.4e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Cucumis melo OX=3...	[more]
A0A6J1K5Z1	1.8e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 2-like isoform X1 OS=Cucurb...	[more]
A0A6J1K3X4	1.8e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 OS=Cucurb...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001078	Bhi12M001078	mRNA