Bhi12G000989 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000989
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ubiquitin carboxyl-terminal hydrolase 12-like
Location	chr12: 34024537 .. 34024721 (+)
RNA-Seq Expression	Bhi12G000989
Synteny	Bhi12G000989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAACATTGGTTTGATGGTGAAACAAAGAGCTGGGGTTTTGGAAATTTCATGTCATTGAGTAATGTCAAGGAACCAATGAAGGGATTTCTCTGCGACGATACTTTGATGGTTGAAGTGAAAATTAATGTTATCTCTATCTTGAAAAGTTTTTATAGGAAGGGAAATGGTGGTGGCAGATCATAA

mRNA sequence

TTAAACATTGGTTTGATGGTGAAACAAAGAGCTGGGGTTTTGGAAATTTCATGTCATTGAGTAATGTCAAGGAACCAATGAAGGGATTTCTCTGCGACGATACTTTGATGGTTGAAGTGAAAATTAATGTTATCTCTATCTTGAAAAGTTTTTATAGGAAGGGAAATGGTGGTGGCAGATCATAA

Coding sequence (CDS)

TTAAACATTGGTTTGATGGTGAAACAAAGAGCTGGGGTTTTGGAAATTTCATGTCATTGAGTAATGTCAAGGAACCAATGAAGGGATTTCTCTGCGACGATACTTTGATGGTTGAAGTGAAAATTAATGTTATCTCTATCTTGAAAAGTTTTTATAGGAAGGGAAATGGTGGTGGCAGATCATAA

Protein sequence

KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRKGNGGGRS

Homology

[Close]

BLAST of Bhi12G000989 vs. TAIR 10
Match: AT3G11910.1 (ubiquitin-specific protease 13 )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + EP +G+L +DT+++E ++ V  +L
Sbjct: 138 QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVL 184

[Close]

BLAST of Bhi12G000989 vs. TAIR 10
Match: AT3G11910.2 (ubiquitin-specific protease 13 )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + EP +G+L +DT+++E ++ V  +L
Sbjct: 137 QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVL 183

[Close]

BLAST of Bhi12G000989 vs. TAIR 10
Match: AT5G06600.1 (ubiquitin-specific protease 12 )

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + +P +G+L +DT++VE ++ V  +L
Sbjct: 139 QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVL 185

[Close]

BLAST of Bhi12G000989 vs. TAIR 10
Match: AT5G06600.2 (ubiquitin-specific protease 12 )

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + +P +G+L +DT++VE ++ V  +L
Sbjct: 138 QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVL 184

[Close]

BLAST of Bhi12G000989 vs. TAIR 10
Match: AT5G06600.3 (ubiquitin-specific protease 12 )

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + +P +G+L +DT++VE ++ V  +L
Sbjct: 139 QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVL 185

[Close]

BLAST of Bhi12G000989 vs. ExPASy Swiss-Prot
Match: Q84WU2 (Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-05
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + EP +G+L +DT+++E ++ V  +L
Sbjct: 138 QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKVL 184

[Close]

BLAST of Bhi12G000989 vs. ExPASy Swiss-Prot
Match: Q9FPT1 (Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-05
Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISIL 48
           +H F+     WGF +FM LS + +P +G+L +DT++VE ++ V  +L
Sbjct: 139 QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKVL 185

[Close]

BLAST of Bhi12G000989 vs. ExPASy Swiss-Prot
Match: Q9M2J0 (MATH domain and coiled-coil domain-containing protein At3g58260 OS=Arabidopsis thaliana OX=3702 GN=At3g58260 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-04
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 3   WFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKS 50
           WFD     WGF   ++L +V +   GFL +D +MV V ++VI ++ S
Sbjct: 97  WFDENAPGWGFPPMLNLKDVSDKYGGFLVNDEVMVAVAVDVIEVVGS 143

[Close]

BLAST of Bhi12G000989 vs. NCBI nr
Match: XP_038874970.1 (uncharacterized protein LOC120067490 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRKGNGGGRS 60
           KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRKGNGGGRS
Sbjct: 281 KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRKGNGGGRS 340

[Close]

BLAST of Bhi12G000989 vs. NCBI nr
Match: XP_022146382.1 (uncharacterized protein LOC111015610 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRK 54
           K+WF+      GF +FMSL ++ E  KG++CDDTL+VEVKINV+S LK  ++K
Sbjct: 280 KYWFEFGDLGLGFPDFMSLRDLNEVTKGYICDDTLIVEVKINVVSTLKELFKK 332

[Close]

BLAST of Bhi12G000989 vs. NCBI nr
Match: XP_022146381.1 (ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 5.3e-07
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSF 51
           K+WF+      GF NFMSL ++ E  KG++CDDTL+VEVKINV+S LK F
Sbjct: 232 KYWFEFGDLGLGFRNFMSLRDLNEVTKGYICDDTLIVEVKINVVSTLKLF 281

[Close]

BLAST of Bhi12G000989 vs. NCBI nr
Match: XP_040992262.1 (uncharacterized protein LOC121239172 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSF 51
           +HWFD     WG   F SL ++K+P  G+L DDTL+VE KI+VIS +K F
Sbjct: 284 EHWFDSSRGGWGSQTFSSLRDLKDPSNGYLVDDTLLVECKIDVISEVKDF 333

[Close]

BLAST of Bhi12G000989 vs. NCBI nr
Match: XP_040992261.1 (uncharacterized protein LOC121239172 isoform X1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSF 51
           +HWFD     WG   F SL ++K+P  G+L DDTL+VE KI+VIS +K F
Sbjct: 286 EHWFDSSRGGWGSQTFSSLRDLKDPSNGYLVDDTLLVECKIDVISEVKDF 335

[Close]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL
Match: A0A6J1CZF7 (uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015610 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYRK 54
           K+WF+      GF +FMSL ++ E  KG++CDDTL+VEVKINV+S LK  ++K
Sbjct: 280 KYWFEFGDLGLGFPDFMSLRDLNEVTKGYICDDTLIVEVKINVVSTLKELFKK 332

[Close]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL
Match: A0A6J1CZ69 (ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=LOC111015609 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1   KHWFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSF 51
           K+WF+      GF NFMSL ++ E  KG++CDDTL+VEVKINV+S LK F
Sbjct: 232 KYWFEFGDLGLGFRNFMSLRDLNEVTKGYICDDTLIVEVKINVVSTLKLF 281

[Close]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL
Match: A0A251V6E2 (Putative TRAF-like family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0068831 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 3   WFDGETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSF 51
           WFD  T SWGF +FM LS + +   GFL DDTL+VEV+++V+ +L++F
Sbjct: 280 WFDNATDSWGFSSFMPLSQLMDFENGFLLDDTLIVEVEVSVMGMLRNF 327

[Close]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL
Match: A0A6J1CYF6 (uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015611 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1   KHWFD--GETKSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFY 52
           K WF+  G     GF  FM L ++KE  KG++CDDTL+V+VKINV+SILK  +
Sbjct: 528 KCWFEFGGIETGLGFPEFMPLRDLKEVKKGYICDDTLIVKVKINVVSILKKLF 580

[Close]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL
Match: A0A1S3CQ20 (uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 9   KSWGFGNFMSLSNVKEPMKGFLCDDTLMVEVKINVISILKSFYR 53
           K  G  NFMSLS++KE  KG+L +DTL+VEVKINVIS +K  YR
Sbjct: 300 KGCGASNFMSLSDLKERTKGYLVNDTLVVEVKINVISTIKKLYR 343

The following BLAST results are available for this feature:

BLAST of Bhi12G000989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11910.1	3.7e-06	38.30	ubiquitin-specific protease 13	[more]
AT3G11910.2	3.7e-06	38.30	ubiquitin-specific protease 13	[more]
AT5G06600.1	6.3e-06	38.30	ubiquitin-specific protease 12	[more]
AT5G06600.2	6.3e-06	38.30	ubiquitin-specific protease 12	[more]
AT5G06600.3	6.3e-06	38.30	ubiquitin-specific protease 12	[more]

BLAST of Bhi12G000989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WU2	5.2e-05	38.30	Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 ...	[more]
Q9FPT1	8.8e-05	38.30	Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 ...	[more]
Q9M2J0	7.5e-04	38.30	MATH domain and coiled-coil domain-containing protein At3g58260 OS=Arabidopsis t...	[more]

BLAST of Bhi12G000989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874970.1	3.5e-27	100.00	uncharacterized protein LOC120067490 [Benincasa hispida]	[more]
XP_022146382.1	3.1e-07	52.83	uncharacterized protein LOC111015610 [Momordica charantia]	[more]
XP_022146381.1	5.3e-07	58.00	ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia]	[more]
XP_040992262.1	5.9e-06	52.00	uncharacterized protein LOC121239172 isoform X2 [Juglans microcarpa x Juglans re...	[more]
XP_040992261.1	5.9e-06	52.00	uncharacterized protein LOC121239172 isoform X1 [Juglans microcarpa x Juglans re...	[more]

BLAST of Bhi12G000989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZF7	1.5e-07	52.83	uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1CZ69	2.6e-07	58.00	ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A251V6E2	3.7e-06	52.08	Putative TRAF-like family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g...	[more]
A0A6J1CYF6	1.1e-05	52.83	uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S3CQ20	1.1e-05	63.64	uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002083	MATH/TRAF domain	PFAM	PF00917	MATH	coord: 2..43 e-value: 1.8E-4 score: 21.6
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 1..41 score: 15.302611
IPR008974	TRAF-like	GENE3D	2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	coord: 1..56 e-value: 1.4E-11 score: 46.5
None	No IPR available	SUPERFAMILY	49599	TRAF domain-like	coord: 2..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000989	Bhi12M000989	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding