Bhi12G000884 (gene) Wax gourd (B227) v1

Overview
NameBhi12G000884
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Locationchr12: 30734783 .. 30735388 (+)
RNA-Seq ExpressionBhi12G000884
SyntenyBhi12G000884
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTCCGATTAGAGATCAAGTTTCTTCTGAAATAATCTCGTCTTCCCTGCCCCTCAAAGTAATCAACCCTGGCAGCAAAATTACTATCCTGAAATTGGACGAAAGTAATTTTCTACCATGGAAGCTTCATATTAAAATGACGCTAAGAGGGTATGGGCTTGAACGATTTATTGATCCACGATCTCTTACTCCACCAAGATTTCTATCGACTGATTCCCCATCTTCTTCTTCAAGGATTCTTAATCTAGAATATGATTACTGGGTACGACAAGACAATCTCATCGTTTCTGACTTCTTGGCGCCATGTCAAAAGAAATTGTGTCTGAAATGCTTGATTGCTCTACATCTCAAGAGGTATAGAGTGTTCTTCTTGCACGTTTTGCTTCACATAATATGGCTTGAGTACTTGATTTAAAAGGCAAATTGGAGACAATGAAGAAAGGCAATCTGAAGTTGGAGGAGTATTTTCAGAAGATTAAAAACTTGGTTGATTCATTAAAGGTCGTCGGTCGATCTACCTCTTAAAGATCATGTTATGCATATTCTAGCCGGTTTAGGACCTGAGTATGACTACTGTTTCTGTCATCACAGACAAGGATGA

mRNA sequence

ATGGATACTCCGATTAGAGATCAAGTTTCTTCTGAAATAATCTCGTCTTCCCTGCCCCTCAAAGTAATCAACCCTGGCAGCAAAATTACTATCCTGAAATTGGACGAAAGTAATTTTCTACCATGGAAGCTTCATATTAAAATGACGCTAAGAGGGTATGGGCTTGAACGATTTATTGATCCACGATCTCTTACTCCACCAAGATTTCTATCGACTGATTCCCCATCTTCTTCTTCAAGGATTCTTAATCTAGAATATGATTACTGGGTACGACAAGACAATCTCATCGTTTCTGACTTCTTGGCGCCATGTCAAAAGAAATTGTGTCTGAAATGCTTGATTGCTCTACATCTCAAGAGGTCGTCGGTCGATCTACCTCTTAAAGATCATGTTATGCATATTCTAGCCGGTTTAGGACCTGAGTATGACTACTGTTTCTGTCATCACAGACAAGGATGA

Coding sequence (CDS)

ATGGATACTCCGATTAGAGATCAAGTTTCTTCTGAAATAATCTCGTCTTCCCTGCCCCTCAAAGTAATCAACCCTGGCAGCAAAATTACTATCCTGAAATTGGACGAAAGTAATTTTCTACCATGGAAGCTTCATATTAAAATGACGCTAAGAGGGTATGGGCTTGAACGATTTATTGATCCACGATCTCTTACTCCACCAAGATTTCTATCGACTGATTCCCCATCTTCTTCTTCAAGGATTCTTAATCTAGAATATGATTACTGGGTACGACAAGACAATCTCATCGTTTCTGACTTCTTGGCGCCATGTCAAAAGAAATTGTGTCTGAAATGCTTGATTGCTCTACATCTCAAGAGGTCGTCGGTCGATCTACCTCTTAAAGATCATGTTATGCATATTCTAGCCGGTTTAGGACCTGAGTATGACTACTGTTTCTGTCATCACAGACAAGGATGA

Protein sequence

MDTPIRDQVSSEIISSSLPLKVINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWVRQDNLIVSDFLAPCQKKLCLKCLIALHLKRSSVDLPLKDHVMHILAGLGPEYDYCFCHHRQG
Homology
BLAST of Bhi12G000884 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.8e-04
Identity = 24/71 (33.80%), Postives = 34/71 (47.89%), Query Frame = 0

Query: 31  ILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWV 90
           + KL  +N+L W   +     GY L  F+D  +  PP  + TD+       +N +Y  W 
Sbjct: 23  VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPR----VNPDYTRWK 82

Query: 91  RQDNLIVSDFL 102
           RQD LI S  L
Sbjct: 83  RQDKLIYSAVL 89

BLAST of Bhi12G000884 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 24/71 (33.80%), Postives = 34/71 (47.89%), Query Frame = 0

Query: 31  ILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWV 90
           + KL  +N+L W   +     GY L  F+D  +  PP  + TD+       +N +Y  W 
Sbjct: 23  VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPR----VNPDYTRWR 82

Query: 91  RQDNLIVSDFL 102
           RQD LI S  L
Sbjct: 83  RQDKLIYSAIL 89

BLAST of Bhi12G000884 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-14
Identity = 65/191 (34.03%), Postives = 92/191 (48.17%), Query Frame = 0

Query: 5   IRDQVSSEIISSSLPLKVINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSL 64
           IR+  ++ II +S   K INPGSK++I++L++ N L WK  I+  L+G GLE +ID    
Sbjct: 7   IRNSDAARIIQAS---KTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNED 66

Query: 65  TPPRFLST--DSPSSSSRILNLEYDYWVRQDNLIVSDFLAPCQKKL-------------- 124
           TP +F+ T  D  SSSS   N  Y  W++QD LI +  L    + +              
Sbjct: 67  TPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIW 126

Query: 125 -CLKCLIA---------------------LHLK------RSSVD--------LPLKDHVM 144
             L+C+ A                     L LK      ++ VD        L  +DH+M
Sbjct: 127 TVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIM 186

BLAST of Bhi12G000884 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-10
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 22  VINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRI 81
           ++NPG+KI+ +KL++ NFL W+L I   L+G+GL +FIDP +  P  F+ +   SSS   
Sbjct: 19  IVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADESSSVPS 78

Query: 82  LNLEYDYWVRQDNLIVSDFLAPCQKKLCLKCL 114
            N E+  W RQD LI S  L    +++  + L
Sbjct: 79  PNPEFINWKRQDKLITSWLLGSMSEEILSQML 110

BLAST of Bhi12G000884 vs. NCBI nr
Match: RVW39690.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-09
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 0

Query: 32  LKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWVR 91
           +KLD +NFL WK  +   ++GYGL+RF+   S  PP FL  +   + +  +N  +  W +
Sbjct: 36  VKLDNNNFLIWKQQVVFAIKGYGLQRFVFFESAIPPWFLLKEDAQAGN--VNKAFVEWEQ 95

Query: 92  QDNLIVSDFLAPCQKKLCLKCLIALHLKRSSVDLPLKDHVMHILAGLGPEYD 144
           QD L++S  L+   +K+ L C+  L L      L  KDH+  IL GL  EYD
Sbjct: 96  QDQLLLSWLLSSISEKVLLSCVDFLALVGHI--LTDKDHIDAILDGLTDEYD 143

BLAST of Bhi12G000884 vs. NCBI nr
Match: RVX08165.1 (hypothetical protein CK203_017703 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-09
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0

Query: 13  IISSSLPLK-VINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLS 72
           I   S PL  VI   S++ ++KL + NFL WK      ++G+ LE FI   S+ P     
Sbjct: 19  IFDFSFPLNPVIRLSSQLVMVKLIDENFLIWKQQALAMIQGFSLESFIYGTSICPSEM-- 78

Query: 73  TDSPSSSSRILNLEYDYWVRQDNLIVSDFLAPCQKKLCLKCLIALHLKRSSV-------- 132
           T S + S + +NLEY  W RQD L+VS  L+   K +  + + +  LK+S +        
Sbjct: 79  TSSVNGSLQSMNLEYVTWQRQDQLLVSWILSSMSKSILPQMIQS--LKKSGLPMREYLLK 138

Query: 133 -------------DLPLKDHVMHILAGLGPEYDY 145
                         +  +D +++I+AGLG EYDY
Sbjct: 139 MKTYSNTFASIGHQISKEDQILYIVAGLGIEYDY 168

BLAST of Bhi12G000884 vs. NCBI nr
Match: XP_042066400.1 (uncharacterized protein LOC121809677 [Salvia splendens])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 0

Query: 14  ISSSLPLKVINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTD 73
           IS++ P   I   +     KL +  +L WK  I  T+RGYGLE F+   S+ PP+ +  +
Sbjct: 7   ISNTTPTSPIFLHNHSVPSKLSDVYYLSWKQQILATVRGYGLEGFLKGESVVPPKMIQVE 66

Query: 74  SPSSSSRILNLEYDYWVRQDNLIVSDFLAPCQKKLCLKCLIALH---------------- 133
             S S+  LNL++  W RQD L+ S ++     +  +  ++ L+                
Sbjct: 67  GSSQST--LNLKFVTWHRQDQLL-SAWIKSSLSESTMVLVVGLNSSQETMKKDVLPMSVN 126

Query: 134 ----------LKRSSVDLPLKDHVMHILAGLGPEYD 144
                     L  +   +P +DH++HIL GLG EYD
Sbjct: 127 LSKVKICCDLLGSAGCKIPEEDHILHILGGLGSEYD 159

BLAST of Bhi12G000884 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 65/191 (34.03%), Postives = 92/191 (48.17%), Query Frame = 0

Query: 5   IRDQVSSEIISSSLPLKVINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSL 64
           IR+  ++ II +S   K INPGSK++I++L++ N L WK  I+  L+G GLE +ID    
Sbjct: 7   IRNSDAARIIQAS---KTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNED 66

Query: 65  TPPRFLST--DSPSSSSRILNLEYDYWVRQDNLIVSDFLAPCQKKL-------------- 124
           TP +F+ T  D  SSSS   N  Y  W++QD LI +  L    + +              
Sbjct: 67  TPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIW 126

Query: 125 -CLKCLIA---------------------LHLK------RSSVD--------LPLKDHVM 144
             L+C+ A                     L LK      ++ VD        L  +DH+M
Sbjct: 127 TVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIM 186

BLAST of Bhi12G000884 vs. ExPASy TrEMBL
Match: A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 22  VINPGSKITILKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRI 81
           ++NPG+KI+ +KL++ NFL W+L I   L+G+GL +FIDP +  P  F+ +   SSS   
Sbjct: 19  IVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADESSSVPS 78

Query: 82  LNLEYDYWVRQDNLIVSDFLAPCQKKLCLKCL 114
            N E+  W RQD LI S  L    +++  + L
Sbjct: 79  PNPEFINWKRQDKLITSWLLGSMSEEILSQML 110

BLAST of Bhi12G000884 vs. ExPASy TrEMBL
Match: A0A438DWB5 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_591 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 0

Query: 32  LKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWVR 91
           +KLD +NFL WK  +   ++GYGL+RF+   S  PP FL  +   + +  +N  +  W +
Sbjct: 36  VKLDNNNFLIWKQQVVFAIKGYGLQRFVFFESAIPPWFLLKEDAQAGN--VNKAFVEWEQ 95

Query: 92  QDNLIVSDFLAPCQKKLCLKCLIALHLKRSSVDLPLKDHVMHILAGLGPEYD 144
           QD L++S  L+   +K+ L C+  L L      L  KDH+  IL GL  EYD
Sbjct: 96  QDQLLLSWLLSSISEKVLLSCVDFLALVGHI--LTDKDHIDAILDGLTDEYD 143

BLAST of Bhi12G000884 vs. ExPASy TrEMBL
Match: A0A803PAL4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 32  LKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWVR 91
           +KLDE N+LPW+  +  +++G  L  ++DP    PP+FLST      S  +N E++ W +
Sbjct: 40  IKLDEHNYLPWRHQVLASIKGSRLLNYLDP-DRAPPKFLST--TDERSHTVNPEFEDWEQ 99

Query: 92  QDNLIVSDFLAPCQKKL---CLKCLIALHLKRSSVDLPLKDHVMHILAGLGPEYD 144
           QDNL+VS  L+   +K     +  L  +  K++      +DH+  I  GL  EYD
Sbjct: 100 QDNLLVSWLLSSMSEKTTHWIVDLLTTIGHKKTP-----QDHIESIFNGLLIEYD 146

BLAST of Bhi12G000884 vs. ExPASy TrEMBL
Match: A0A438DS65 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3288 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0

Query: 32  LKLDESNFLPWKLHIKMTLRGYGLERFIDPRSLTPPRFLSTDSPSSSSRILNLEYDYWVR 91
           +KLD +NFL WK  +   ++GYGL+RF+      PPRFL  +   + +  +N  +  W +
Sbjct: 36  VKLDNNNFLIWKQQVVSAIKGYGLQRFVFFEFAIPPRFLLKEDAQAEN--VNKAFVEWEQ 95

Query: 92  QDNLIVSDFLAPCQKKLCLKCLIALHLKRSSVD--LPLKDHVMHILAGLGPEYD 144
           QD L++S  L+   +K+   C+ +     +SV   L  KDH+  IL  L  EYD
Sbjct: 96  QDQLLLSWMLSSIFEKVLPSCVDSF----ASVGHILTNKDHIDAILVSLIHEYD 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q94HW23.8e-0433.80Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT948.5e-0433.80Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
XP_022154487.16.7e-1434.03uncharacterized protein LOC111021757 [Momordica charantia][more]
XP_022159146.12.6e-1040.22uncharacterized protein LOC111025572 [Momordica charantia][more]
RVW39690.13.8e-0937.50Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera][more]
RVX08165.18.4e-0932.47hypothetical protein CK203_017703 [Vitis vinifera][more]
XP_042066400.11.9e-0829.49uncharacterized protein LOC121809677 [Salvia splendens][more]
Match NameE-valueIdentityDescription
A0A6J1DLT93.2e-1434.03uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1E3141.3e-1040.22uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A438DWB51.8e-0937.50Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976... [more]
A0A803PAL41.3e-0734.78Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A438DS652.2e-0735.09Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000884Bhi12M000884mRNA