Bhi12G000352 (gene) Wax gourd (B227) v1

Overview
NameBhi12G000352
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Description40S ribosomal protein S13
Locationchr12: 12265855 .. 12270150 (+)
RNA-Seq ExpressionBhi12G000352
SyntenyBhi12G000352
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTTAATTTATTTAATATATAAATAAATAATTTGCATTATTATGGAAATTATGGAGTTATGTAAATGTGGAGTTAGTGAAAGAAAAGTGTAAGATCCTTCTCATCTCCTATAAGTAGAGCTCCACATTTTTCTAAGTATGCTTTCAAATCTCTACATTCTCTCAAAACTTTCTAATTCTCTCAATCTCAAGAATAGAAAGAATTCTTCTTCTTCTCATATTCTTTCAAAAGGTGATTCCCACGTATCAAGTCCTTGTCGGAGAATAGCGGAGAAGACAGTGTGATGGTGTTTGACATTCCATTCGCCGGAAAAACTCATTGTTGGAGAAGGAAATTATTGAAGTGTTCTTTGAAGGTAAGTTCCTTTCTTCTTCCCTAAAATCACTTATAAAATGCATGCTTAATTAGATTATATATATGTTTTTCATTCTCTAAATAAAAATATTATTGATACAACATTCATAAGCTTCCGTACAAGATTTGATCCCTTCAGCTACAAGGGTCATACTAAAGCACAAAAGAATCAATGATTTTATCAATTTATTACTTATTACAACTAATTAAGTGCTAACAACTAATGACTGTTTACTAATTGTTGTTAGTTGAACATGAATAAAGCATAATTGATAAAGATGGCCAATGGAAGGGAAGCACGAAGAGCAAGGCCAAAGGAAAAAAGAGTTAAAATGCAAAAACCTACTGATGAAAAGTCGGTAACAATATAGATATGGATAGACACGACAAGAGCAACATTCTAATAGATAGGTTGATTTCCTTAAACTATTAGTGACACAATATCTGATGAACAACTTTTTTCTTTTGTTATGTATGCTTAAGTTCTTATGAAAAATATCTGAGAAAAGGGAACAATCATTAAATGGTTTAATAGATGGGAAGATGATTAAAATATGAGTTATGTTTAAAAGTACACCATTTTTGTACTCTTGGACACCAGAAATAATTGAACGTCAACATACCAATATACATCGTATTTGATTGATTATGGATAAACTGTCAATTTCCCCATTACATATATAAATTAAGGTATACTTACAACAATAATATTTAAATTTTAAAGCATGACAACCGAAGTAAAGAAACCTAACAACCTCGTTACATTAAACTGAGACCATAAGTTAGTATAAAATTATCTTAATATTGCACAAAGAACGTAGTAAAAATTTTAAAAGTTTCAGATATTCCAAAATGAATAATTGTACATATATTCAATATCAACAAATACAATGTAATTCTAGAACGTGACACATACAATCCAACAAGAAAAGCAGTGAAGCTTTTTAGAAATATATACATTGACATAGATGCAAAAAATATTGTGATAGATAACGAAATTAAAATTGAAGAACACTTTCATTAAGAAAAAAACCAAAAACAATTTAAACCAAAAACAAAATTCAACAATATCAGACGACAATAGTATGAACTACTAATGTAGGGATTCAATGTCGTAAAGAAGTACCAGACGATGGTGATTAAGAAATACAGAAAATTATAAAATTCAAATGAAATATATAGTTTGTTAGATGATAATGTCTATAAAATAATAAGTAAAATCTAATGATGATAAAATATTTAATCCGAATTTAAAATAATAAAAAATTAATAAGATAATATAAAATCTAAAAATATATTATCAATAAAAATCAAAATGGTGATAAACAAATTAAAAATGGATTAATCCTGAATATTTTTGAAAAGTGGTTAAATCAAATAAAATATGATATTAATCCATCAGTTTATATTTCAAAATGAGTGAAAAATCTAGCACATTTCTCTCTTGAATCCGTTAGGTCGGAATTTCACAACCGATGTCCCCATTTACAATTGAGACATGGTATAGCAAATACATTGTATCCGAAAAAGTTATTATTCGACCATACTAAGGACAATTTGAAAATTATAAGATTAGATGTGTAGGCATGCTTTTGTGAAAAATCTTATTATTTCTATTTCTTTTTTGACAAAAATCAAAAGATCCCAATTTTGCTATTCCCTCCAATTTCCCAATTAATACTAAATAATGGGCTTAACTAAGTAAATGTGTGCTTAATGATGAAAGCCCAATACTTGGACCAGCAGCAAGATCCAGATTCCGTGTCAGTATAAAACGCTGTGCCAAGCCATGCTAGGGTTTTGGTTATCGGCCGTCGCGGTAGAGCAACCCTTATCGAACTCGAGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGGTTGGTTTCTAATCTCCGATTTTGTTTCTGATTCATTTCGATTTTGTCTGTTGATTTCATTTGTTGAATATGGTTGAAGTTATTCCCAACATTGACTCCATTTTCTCATTTACAGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACAGATGTAAGTACGCGACGACAAGTTCTGAGTTTTGCTATTAACTTCCAGGATTTTGTTATTTCTTCTATAATAGTCATTTCTTTTCCTATTATAATTTGAACGTAGGTTGAAGATAATATCTGTAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAAAAGTGTTACTGGGAGCAAAATCTTGCGTATTCTTAAGGCCCATGGTATTCTTCTTTTGCCTGACGCCAAGCATATCCATTAAATTTGTTTAGGTGCATTTTTTCACTGTAGTTTGGGCTTGTACTATCTAGGACTGGCACCTGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATTCGTAAGCATTTGGAGAGGAACAGGAAGGATAAGGACTCAAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTTCTTCGTGCTCTGATAACTTAAATCATGTGGCATATTTGATATGATGATCTATTCGATCAATGTAGTTCATCGTTATGGTTTGTCTTTGAAGCTATCAAATCATTATTTAGTTTCATATTTCAGTATAGCTACTTTCCTTCTTTTAAAGCTTGTGGTATTGAACATGGTCTATGGTGTGAGTTCTTTCTTACCTTTATCCATATGGATCAAGAATCATGTTGGCCATTTGCCAGATGAAATTTTATGTTAAAACATGCTATGGTGCACATTCCATAATTCAAACCCAATACTAACAAGGGAACATATAAGAGAACCATGGAAGATACATTTTGTTTGTGATCCAATGGCAACTACTGTAGAATGGTTGCATGTTTTTGCTGTTTGATAAAAAAAAAATTGGGGCATGAAAATGTTTTTGACATTTTGTAGTGTGTTATTGAATTTAGTGATGATTTTACATACTGGGTTAGTGAAATATTATTCTCACGGCTGTGTATTATTGGATCGTGATGCTTTCGGCCTAATTCTATTGAGTGCGCGTATCCTCTTGTGCATCCGGATTTAGTGCTTTTAGTCTGTGGTGAATGTTGTAACCTGATTTGTAGGTTTAGAAATCCTTTTTACCTGGATCATTTTGCGTAGTTAGTTCTACTATCATTTTACAATGGCACATTTCAGAATTTGGCTGCTTTTCCATTTTAAATGTTATTATGGCCTGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCTATTTTGGTATCTGAAGTTTACATAGAATTCTGTCCTGTTCGTTGTTTGGCCAAACTTTTGAACGGCATTTCCCATTTTTTTTAGAATCCATAATTGGTGCTTGCTTTCTTCTCTCATGATGCTTATATGTGCGTCCATGATTGATAAGCAGCTGGCCTTATGTTTATTTTTCTCTTGCAGCGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTGAGTTGAGTGATTGGTGGCTATACGAGATCCAATCTGTGATCTGCTTCAGTCATTGTGAGGTCAGGTGGATCAGTGAGAGTTGTGACTTTGTTTTTGTTTATGGTATCAGTTTTGACTTCAGTTTTTATTTAGTATGGAATCTGTAGACTTATTTGGCGAGATTTAAAAGCAAATTAGAAAAGATTGCGTTGCCTTGATGGCACATGTTTCCTTTTAATAGTATTACACTTGAACCAAAAGTAATTTTCGTAAGATATGCCTACTGAGTTATTAGTTCAAAATGTAGAATAGAAGCGAAGCCACCACCTTTAACTCTTAACCATCCTTGCGAAGAAAAAGTTGACTTACCCATATTTTC

mRNA sequence

TGAATTTAATTTATTTAATATATAAATAAATAATTTGCATTATTATGGAAATTATGGAGTTATGTAAATGTGGAGTTAGTGAAAGAAAAGTGTAAGATCCTTCTCATCTCCTATAAGTAGAGCTCCACATTTTTCTAAGTATGCTTTCAAATCTCTACATTCTCTCAAAACTTTCTAATTCTCTCAATCTCAAGAATAGAAAGAATTCTTCTTCTTCTCATATTCTTTCAAAAGGTGATTCCCACGTATCAAGTCCTTGTCGGAGAATAGCGGAGAAGACAGTGTGATGGTGTTTGACATTCCATTCGCCGGAAAAACTCATTGTTGGAGAAGGAAATTATTGAAGTGTTCTTTGAAGCAAGATCCAGATTCCGTGTCAGTATAAAACGCTGTGCCAAGCCATGCTAGGGTTTTGGTTATCGGCCGTCGCGGTAGAGCAACCCTTATCGAACTCGAGAAGCAGGGCAAAGAGAGACAACCATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACAGATGTTGAAGATAATATCTGTAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAAAAGTGTTACTGGGAGCAAAATCTTGCGTATTCTTAAGGCCCATGGACTGGCACCTGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATTCGTAAGCATTTGGAGAGGAACAGGAAGGATAAGGACTCAAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTGAGTTGAGTGATTGGTGGCTATACGAGATCCAATCTGTGATCTGCTTCAGTCATTGTGAGGTCAGGTGGATCAGTGAGAGTTGTGACTTTGTTTTTGTTTATGGTATCAGTTTTGACTTCAGTTTTTATTTAGTATGGAATCTGTAGACTTATTTGGCGAGATTTAAAAGCAAATTAGAAAAGATTGCGTTGCCTTGATGGCACATGTTTCCTTTTAATAGTATTACACTTGAACCAAAAGTAATTTTCGTAAGATATGCCTACTGAGTTATTAGTTCAAAATGTAGAATAGAAGCGAAGCCACCACCTTTAACTCTTAACCATCCTTGCGAAGAAAAAGTTGACTTACCCATATTTTC

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCAGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACAGATGTTGAAGATAATATCTGTAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAAAAGTGTTACTGGGAGCAAAATCTTGCGTATTCTTAAGGCCCATGGACTGGCACCTGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATTCGTAAGCATTTGGAGAGGAACAGGAAGGATAAGGACTCAAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Homology
[Close]
BLAST of Bhi12G000352 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-76
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-76
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-78
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.1e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-75
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-69
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. NCBI nr
Match: XP_038874585.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. NCBI nr
Match: XP_004147576.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_000544 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. NCBI nr
Match: XP_006421743.1 (40S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal protein S13 [Citrus clementina] >XP_006490240.1 40S ribosomal protein S13 [Citrus sinensis] >XP_006490912.1 40S ribosomal protein S13 [Citrus sinensis] >XP_012489762.1 PREDICTED: 40S ribosomal protein S13 isoform X1 [Gossypium raimondii] >XP_017616110.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_021668549.1 40S ribosomal protein S13 [Hevea brasiliensis] >XP_022765760.1 40S ribosomal protein S13-like [Durio zibethinus] >XP_038994387.1 40S ribosomal protein S13-like [Hibiscus syriacus] >XP_039044602.1 40S ribosomal protein S13-like [Hibiscus syriacus] >PIN07142.1 40S ribosomal protein S13 [Handroanthus impetiginosus] >TYI54663.1 hypothetical protein E1A91_D11G091100v1 [Gossypium mustelinum] >GAY41352.1 hypothetical protein CUMW_058810 [Citrus unshiu] >ESR34983.1 hypothetical protein CICLE_v10006145mg [Citrus clementina] >ESR58514.1 hypothetical protein CICLE_v10022677mg [Citrus clementina])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match: A0A6J1E411 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match: A0A6J1DVX9 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match: A0A1S3ATA6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of Bhi12G000352 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00100.11.3e-7693.38ribosomal protein S13A [more]
AT3G60770.15.0e-7692.72Ribosomal protein S13/S15 [more]
BLAST of Bhi12G000352 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623021.0e-7897.3540S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592241.8e-7593.3840S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462983.1e-7593.3840S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592237.0e-7592.7240S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
Q69UI11.2e-6987.4240S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Bhi12G000352 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038874585.16.5e-78100.0040S ribosomal protein S13-like [Benincasa hispida][more]
XP_022922396.11.4e-7799.3440S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma... [more]
XP_004147576.11.4e-7799.3440S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribos... [more]
XP_022157239.11.4e-7799.3440S ribosomal protein S13-like [Momordica charantia][more]
XP_006421743.17.2e-7798.6840S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal prot... [more]
BLAST of Bhi12G000352 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HYG97.0e-7899.3440S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ... [more]
A0A6J1E4117.0e-7899.3440S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=... [more]
A0A0A0KMS87.0e-7899.34Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15... [more]
A0A6J1DVX97.0e-7899.3440S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE... [more]
A0A1S3ATA67.0e-7899.3440S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 9.1E-40
score: 148.1
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 3.2E-31
score: 107.2
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
e-value: 2.9E-15
score: 66.7
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..145
e-value: 4.7E-15
score: 55.5
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..143
e-value: 6.85829E-27
score: 94.107
NoneNo IPR availableGENE3D1.10.287.10coord: 83..151
e-value: 8.8E-41
score: 140.1
NoneNo IPR availableGENE3D4.10.860.130coord: 35..82
e-value: 6.4E-29
score: 101.4
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 1..151
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..151
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 31.952454
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000352Bhi12M000352mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome