Bhi12G000332 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000332
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr12: 11316395 .. 11316811 (+)
RNA-Seq Expression	Bhi12G000332
Synteny	Bhi12G000332

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCCGCCGCCCTACCCACTGCCGGTTGTCTCCTTCGCAGACCCAACAACCAGCCGCCAGACCCAAATCGAAACTTGTCCGGCCGCTACCCATCTGATCCAGCTGCGTGCAGATGAAGATGGCCATCCGGTTCGGACGCGCGCAAACGAAGGCGACCAGCGACCGGCCACTCGAAACTTGTCCGGCCGATCTCAGACATTGCCGATCGATGCTGTGGAGCCCCGATCTGCTATACCCAGCGCCGATTGGTCCAGATTCGTGATGCCCAACGCCGATCAGTCCCGTTCCCATCCATTGGGGTTGCCGCCGACCTTCTCCTCTCAGATCGGTGCCTTATCTCAATCTTTACCGCACCAAAGGACAGATGGAAGAAGTATAGGTATTTTCCAGTCGAGTATGAGCAATCGAATGAGGTAG

mRNA sequence

TCGCCGCCGCCCTACCCACTGCCGGTTGTCTCCTTCGCAGACCCAACAACCAGCCGCCAGACCCAAATCGAAACTTGTCCGGCCGCTACCCATCTGATCCAGCTGCGTGCAGATGAAGATGGCCATCCGGTTCGGACGCGCGCAAACGAAGGCGACCAGCGACCGGCCACTCGAAACTTGTCCGGCCGATCTCAGACATTGCCGATCGATGCTGTGGAGCCCCGATCTGCTATACCCAGCGCCGATTGGTCCAGATTCGTGATGCCCAACGCCGATCAGTCCCGTTCCCATCCATTGGGGTTGCCGCCGACCTTCTCCTCTCAGATCGGTGCCTTATCTCAATCTTTACCGCACCAAAGGACAGATGGAAGAAGTATAGGTATTTTCCAGTCGAGTATGAGCAATCGAATGAGGTAG

Coding sequence (CDS)

TCGCCGCCGCCCTACCCACTGCCGGTTGTCTCCTTCGCAGACCCAACAACCAGCCGCCAGACCCAAATCGAAACTTGTCCGGCCGCTACCCATCTGATCCAGCTGCGTGCAGATGAAGATGGCCATCCGGTTCGGACGCGCGCAAACGAAGGCGACCAGCGACCGGCCACTCGAAACTTGTCCGGCCGATCTCAGACATTGCCGATCGATGCTGTGGAGCCCCGATCTGCTATACCCAGCGCCGATTGGTCCAGATTCGTGATGCCCAACGCCGATCAGTCCCGTTCCCATCCATTGGGGTTGCCGCCGACCTTCTCCTCTCAGATCGGTGCCTTATCTCAATCTTTACCGCACCAAAGGACAGATGGAAGAAGTATAGGTATTTTCCAGTCGAGTATGAGCAATCGAATGAGGTAG

Protein sequence

SPPPYPLPVVSFADPTTSRQTQIETCPAATHLIQLRADEDGHPVRTRANEGDQRPATRNLSGRSQTLPIDAVEPRSAIPSADWSRFVMPNADQSRSHPLGLPPTFSSQIGALSQSLPHQRTDGRSIGIFQSSMSNRMR

Homology

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BLAST of Bhi12G000332 vs. NCBI nr
Match: XP_038881446.1 (uncharacterized protein LOC120072971 [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-28
Identity = 85/153 (55.56%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 2   PPPYPLPVVSFADPTTSRQTQIETCPAATHLIQLRADEDGHPVRTRANEGDQRPATRNLS 61
           PPPYP P VS  +P  S +     C    H  Q RADE   PV+T A E DQRPA RN S
Sbjct: 53  PPPYPPPAVS-VEPAASFEDPTTRC---NH--QSRADEGILPVQTHAEEVDQRPAVRNQS 112

Query: 62  GRSQTLPIDAVEPR-----------------SAIPSADWSRFVMPNADQSRSHPLGLPPT 121
            RSQTLP +AVE R                 SAIP  DWSR VM +ADQS   P G+PP 
Sbjct: 113 DRSQTLPTEAVEHRSVTPRADWTRSAMPELQSAIPDTDWSRSVMSDADQSSFRPSGVPPA 172

Query: 122 FSSQIGALSQSLPHQRTDGRSIGIFQSSMSNRM 138
           FSSQIGA SQSLPHQRTDGR +GIFQ  MSN+M
Sbjct: 173 FSSQIGASSQSLPHQRTDGRGMGIFQPGMSNQM 199

The following BLAST results are available for this feature:

BLAST of Bhi12G000332 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000332 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000332 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881446.1	1.9e-28	55.56	uncharacterized protein LOC120072971 [Benincasa hispida]	[more]

BLAST of Bhi12G000332 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000332	Bhi12M000332	mRNA