Bhi11G002396 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002396
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	tRNA_int_end_N2 domain-containing protein
Location	chr11: 78071386 .. 78072713 (-)
RNA-Seq Expression	Bhi11G002396
Synteny	Bhi11G002396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATGTTCCAACCGCAACTGCAACCCTCTCTGCCGGCACACCGCCGGTGACGCAATCGCACGCCGCACACGCCTATAACCTTTTTCTTTCTTCTCTCACACTCTAATGCGCTGACCTCCACCCGTTGCTTCCGTATTTGTTACCGTCGGTGACTCCGCACTCGATTCTTCTTAACTCTCCATTTGCTCGTATGTGAGTTTCTCTTAGATTTTTCTCCTTGCAGTTCAATCAATTCCAGCACAGGGTAAATTTGGAATGCAGTCAAGTTTGATCTAAAATCTTGCCAAATCGGAAATGTTTTTGTAATCCAGAACTCTCTCGTTTCATTTGTAATTTCTTTTTCATTTCATTGTTTGTGGTAGAAAGTTTTCATGACTCAAGTCTCTGAAAACCTTCCCCCTTCCTTATTCCAGTTTTTTGTGTTGTTCAATAAACTGTTATCAAATGAAATTTCAGAATTAGGAATCACGTCACATTAATATCTAGCAATCTTCTGAGTTGTGGATCGTTATTTCTCCATGTTTTTTTACATAGTTCAGTGGCATGTCCGTTCCCTGAACGAGGAGTGTCGATAATTGATTCGGAGGTTTCTGATGGAGGCTACGGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACAATTATGAGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCCGGGTACTTGCGCAAGTTGCAACTCAGGTTGAGAATTTCAAGAATTTAAACTTCTCCAAATCCTTCAATAGGATGATTCTATTTGCTTATTATTAAGTGTTTGTTTCTATATTTTATCTGTCTCTCTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAGATGGGAATGGCAGAAGTTTTAGAGATCAAGGGCAGTCTTTGGACGATAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGATTTTGTTACGGTTTTGTTATCCCTATTGTTTTTGATATTGACCACAACATTTTTTAGGGAGTTCTTCTCTTTAACATCGTGTTAACTTAATTTGAGTACTTTGAAATAGTCGGGTAATATCATGAAAAAAAGAAAAATGGAAGTGTTCCAAGCCAAGGCGAGGAAATAGCCCATGAGGTGAGGAGAGCTGCATTAGGTGCATCTTGGCAATTACCTTGGTCACCCCTTGGTCAGTTTTTATTGCTTTTTGGTTGTCTTTGGTTCTGTATTTAGAACATTACATTATAAATAAAGGGAAGG

mRNA sequence

CTTATGTTCCAACCGCAACTGCAACCCTCTCTGCCGGCACACCGCCGGTGACGCAATCGCACGCCGCACACGCCTATAACCTTTTTCTTTCTTCTCTCACACTCTAATGCGCTGACCTCCACCCGTTGCTTCCGTATTTGTTACCGTCGGTGACTCCGCACTCGATTCTTCTTAACTCTCCATTTGCTCGTATTGGCATGTCCGTTCCCTGAACGAGGAGTGTCGATAATTGATTCGGAGGTTTCTGATGGAGGCTACGGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACAATTATGAGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCCGGGTACTTGCGCAAGTTGCAACTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAGATGGGAATGGCAGAAGTTTTAGAGATCAAGGGCAGTCTTTGGACGATAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGATTTTGTTACGGTTTTGTTATCCCTATTGTTTTTGATATTGACCACAACATTTTTTAGGGAGTTCTTCTCTTTAACATCGTGTTAACTTAATTTGAGTACTTTGAAATAGTCGGGTAATATCATGAAAAAAAGAAAAATGGAAGTGTTCCAAGCCAAGGCGAGGAAATAGCCCATGAGGTGAGGAGAGCTGCATTAGGTGCATCTTGGCAATTACCTTGGTCACCCCTTGGTCAGTTTTTATTGCTTTTTGGTTGTCTTTGGTTCTGTATTTAGAACATTACATTATAAATAAAGGGAAGG

Coding sequence (CDS)

ATGGAGGCTACGGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACAATTATGAGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCCGGGTACTTGCGCAAGTTGCAACTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAGATGGGAATGGCAGAAGTTTTAGAGATCAAGGGCAGTCTTTGGACGATAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAG

Protein sequence

MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEVLEIKGSLWTITGIVRCGKIYCSIEETL

Homology

[Close]

BLAST of Bhi11G002396 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-13
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          ME  DWE+SS  +S ++  +  D  D+EE   + G + KLQ R  +S ARW  ++GMAEV
Sbjct: 1  MEEKDWEASS--SSENEGGFPND--DDEE-FHSGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
             +G LWT TGI+R GK YC IEE L
Sbjct: 61 EVKRGKLWTTTGIIRSGKTYCFIEEAL 82

[Close]

BLAST of Bhi11G002396 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.9e-05
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 0


Query: 57 MAEVLEIKGSLWTITGIVRCGKIYCSIEETL 88
          MAEV   +G LWT TGI+R GK YC IEE L
Sbjct: 1  MAEVEVKRGKLWTTTGIIRTGKTYCFIEEAL 31

[Close]

BLAST of Bhi11G002396 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 44.3 bits (103), Expect = 5.9e-05
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 0


Query: 57 MAEVLEIKGSLWTITGIVRCGKIYCSIEETL 88
          MAEV   +G LWT TGI+R GK YC IEE L
Sbjct: 1  MAEVEVKRGKLWTTTGIIRTGKTYCFIEEAL 31

[Close]

BLAST of Bhi11G002396 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEA DWESSSGGASGD+DNYE+DI +EEECLCASGYLRKLQ RKHASTARWND+MGMAEV
Sbjct: 1  MEAVDWESSSGGASGDEDNYEEDINNEEECLCASGYLRKLQFRKHASTARWNDRMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT TGIVRCGKIYCSIEETL
Sbjct: 61 LENKGSLWTTTGIVRCGKIYCSIEETL 87

[Close]

BLAST of Bhi11G002396 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWESSSGGASGDD+ YEQD++DEEECLCASG +RKLQ RKHASTARWNDQMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE +GSLWT TGIVRCGKIYCS EETL
Sbjct: 61 LENRGSLWTTTGIVRCGKIYCSFEETL 87

[Close]

BLAST of Bhi11G002396 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWE SSGGAS DDDN+EQDIK+EEECLC+SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 1  MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 61 LENKGSLWTTSGIVRCGKIYCSIEETL 87

[Close]

BLAST of Bhi11G002396 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1   MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
           MEATDWE SSGGAS DDDN+EQDIK+EEECLC+SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 272 MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 331

Query: 61  LEIKGSLWTITGIVRCGKIYCSIEETL 88
           LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 332 LENKGSLWTTSGIVRCGKIYCSIEETL 358

[Close]

BLAST of Bhi11G002396 vs. NCBI nr
Match: XP_023538818.1 (tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWE SSGGAS DDDN+EQDIK+EEECLC+SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 1  MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 61 LENKGSLWTTSGIVRCGKIYCSIEETL 87

[Close]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWESSSGGASGDD+ YEQD++DEEECLCASG +RKLQ RKHASTARWNDQMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE +GSLWT TGIVRCGKIYCS EETL
Sbjct: 61 LENRGSLWTTTGIVRCGKIYCSFEETL 87

[Close]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.5e-36
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWE SSGGAS DDDN+EQDIK+EEECLC+SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 1  MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 61 LENKGSLWTTSGIVRCGKIYCSIEETL 87

[Close]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL
Match: A0A0A0KXV5 (tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 79/89 (88.76%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEECL ASG LRKLQ RKHASTARWNDQMGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVLEIKGSLWTITGIVRCGKIYCSIEETL 88
          EVLE KGSLWT TGIVRCGKIYCSIEETL
Sbjct: 61 EVLENKGSLWTTTGIVRCGKIYCSIEETL 89

[Close]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWE SSGGAS DDDN+EQDIK+EEECL +SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 1  MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 61 LENKGSLWTTSGIVRCGKIYCSIEETL 87

[Close]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEECLCASGYLRKLQLRKHASTARWNDQMGMAEV 60
          MEATDWE SSGGAS DDDN+EQDIK+EEECL +SG +RKLQ RKHASTARWND+MGMAEV
Sbjct: 5  MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 64

Query: 61 LEIKGSLWTITGIVRCGKIYCSIEETL 88
          LE KGSLWT +GIVRCGKIYCSIEETL
Sbjct: 65 LENKGSLWTTSGIVRCGKIYCSIEETL 91

The following BLAST results are available for this feature:

BLAST of Bhi11G002396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57360.1	4.5e-13	48.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.1	5.9e-05	64.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.2	5.9e-05	64.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

BLAST of Bhi11G002396 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi11G002396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883355.1	1.9e-37	89.66	uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 unchara...	[more]
XP_022156818.1	2.7e-36	87.36	uncharacterized protein LOC111023660 [Momordica charantia]	[more]
KAG7028441.1	1.3e-35	86.21	tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6596967.1	1.3e-35	86.21	Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp....	[more]
XP_023538818.1	1.3e-35	86.21	tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Bhi11G002396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRN3	1.3e-36	87.36	uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1FKK4	6.5e-36	86.21	tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0KXV5	1.9e-35	88.76	tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G33...	[more]
A0A6J1I8D9	1.6e-34	85.06	tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ICR8	1.6e-34	85.06	tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002396	Bhi11M002396	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0000379	tRNA-type intron splice site recognition and cleavage
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0000214	tRNA-intron endonuclease complex
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0017056	structural constituent of nuclear pore