Bhi11G002151 (gene) Wax gourd (B227) v1

Overview
NameBhi11G002151
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr11: 69721862 .. 69722059 (-)
RNA-Seq ExpressionBhi11G002151
SyntenyBhi11G002151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGGGAAACCACGGTAGATCGAGTCATCTGCAAGTAAGAGCGGAAGGGGATGAGCAACTGCTTGGGAAATTTGCTCGGTATTTGGCAGAAAGTTTAGGAGGAGTGTTAATAGACCCCGAAAAGCGTTTTGGTATTGAACGGTTGAAGGCATTAGGGGCCACAACCTTTGAAGGAACCACGAACCCAGCAGAT

mRNA sequence

ATGATGGAGGGAAACCACGGTAGATCGAGTCATCTGCAACAACTGCTTGGGAAATTTGCTCGGTATTTGGCAGAAAGTTTAGGAGGAGTGTTAATAGACCCCGAAAAGCGTTTTGGTATTGAACGGTTGAAGGCATTAGGGGCCACAACCTTTGAAGGAACCACGAACCCAGCAGAT

Coding sequence (CDS)

ATGATGGAGGGAAACCACGGTAGATCGAGTCATCTGCAACAACTGCTTGGGAAATTTGCTCGGTATTTGGCAGAAAGTTTAGGAGGAGTGTTAATAGACCCCGAAAAGCGTTTTGGTATTGAACGGTTGAAGGCATTAGGGGCCACAACCTTTGAAGGAACCACGAACCCAGCAGAT

Protein sequence

MMEGNHGRSSHLQQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD
Homology
BLAST of Bhi11G002151 vs. NCBI nr
Match: XP_038877272.1 (uncharacterized protein LOC120069556 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 3  EGNHGRSSHLQ-------QLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTT 60
          E + G SSH Q       Q++ +FAR LAE+LG V +DP+K F IERLKALGA+TFEGT 
Sbjct: 22 ERDQGESSHPQSEDGTDEQMMRRFARCLAENLGEVTVDPKKWFSIERLKALGASTFEGTM 81

BLAST of Bhi11G002151 vs. NCBI nr
Match: WP_217833179.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0

Query: 5  NHGRSSHLQ-------QLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNP 60
          + G SSH Q       QL  + A+ LA S+G V  DPEK++ IERLKALGATTFEGT +P
Sbjct: 2  SEGESSHPQAEVNVEEQLFTRIAQRLAASIGSVESDPEKKYSIERLKALGATTFEGTVDP 61

BLAST of Bhi11G002151 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 6   HGRSSHLQQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
           H   +  +QLL + A+ L   +     DPEK++GIERLKALGATTF GTTNPAD
Sbjct: 55  HVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPAD 108

BLAST of Bhi11G002151 vs. NCBI nr
Match: XP_038895929.1 (uncharacterized protein LOC120084100 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 16 LGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
          + KF + L  SLG +  DPEK++GIERLKALGAT FEGT +PAD
Sbjct: 1  MDKFTQILQASLGNIQPDPEKKYGIERLKALGATNFEGTKDPAD 44

BLAST of Bhi11G002151 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 14 QLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
          ++  +  + LA S+G +  DPEK+FGIERLKALGATTF+GTT+P D
Sbjct: 4  RVFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLD 49

BLAST of Bhi11G002151 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 6   HGRSSHLQQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
           H   +  +QLL + A+ L   +     DPEK++GIERLKALGATTF GTTNPAD
Sbjct: 55  HVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPAD 108

BLAST of Bhi11G002151 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 13 QQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
          +QLL + A+ L   +     DPEK++G ERLKALGATTF GTTNP D
Sbjct: 43 EQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTD 89

BLAST of Bhi11G002151 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 13 QQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
          +QLL + A+ L   +     DPEK++G ERLKALGATTF GTTNP D
Sbjct: 43 EQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTD 89

BLAST of Bhi11G002151 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.0e-05
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0

Query: 33 DPEKRFGIERLKALGATTFEGTTNPAD 60
          DPEK++GIERLKALGATTF GTTNPAD
Sbjct: 51 DPEKKYGIERLKALGATTFAGTTNPAD 77

BLAST of Bhi11G002151 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 13 QQLLGKFARYLAESLGGVLIDPEKRFGIERLKALGATTFEGTTNPAD 60
          +QLL + A+ L   +     D EK++GIERLKALGATTF GTTNP D
Sbjct: 43 EQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVD 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038877272.11.5e-0959.38uncharacterized protein LOC120069556 [Benincasa hispida][more]
WP_217833179.11.2e-0653.23hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KAA0035225.11.5e-0655.56DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
XP_038895929.12.6e-0663.64uncharacterized protein LOC120084100 [Benincasa hispida][more]
XP_038896416.14.4e-0658.70uncharacterized protein LOC120084680 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A5D3DES57.4e-0755.56DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BB913.7e-0657.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7T1M03.7e-0657.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5A7UZM69.0e-0588.89Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7SJ991.2e-0457.45DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M002151Bhi11M002151mRNA