Bhi11G002008 (gene) Wax gourd (B227) v1

Overview
NameBhi11G002008
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr11: 65300573 .. 65301577 (+)
RNA-Seq ExpressionBhi11G002008
SyntenyBhi11G002008
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAAGACTGGCCTACGACCCTTCACAGAAAAAGGGTCTCTACTTCAAGGAATTTCAGATAAGTCTTTGGTTTGACGAGGGAATGGCAGTTGTTAAAGCATGGGATAGGAATGGAGGCATTCCAGCCCAACATACTCCGATGAATGGGTCGAGAGAGATAGGGATGGGAGGCTGCAAGCACTACGGGCGGAGCAGCATAGTATGAATAAGAAGCAAAGTCAATATTACGGAAATCGACATTAAAAAAAATAGGCATATTGGGAAGGAATAGGAGAGGGCTAGAAGCGACTCGTTCGTGTCAGCCATTCTTTTCTCCGAAATCCTTTCTTCGAAATCCTTCTTTCCCCTCGTATTTCTCAAGGGCGAGGAAGACAACTCTATCAATAACAAGAAAAAAGTAGCAATTCCGTTTAAAATGGTAAACGACTGATTCCTCTCTCGTTGTCTTAGAGGAGGTTCCTCTCTTGTTTCAGTGCCAGGGCTATGATTTTCTCGCTATTGAGACACTTACTTAATTTTAGGCGGAGAAGGGGAGGTAAGAAGGAATCAACGTTATCCACAATATTAAGGAAAGGTTTTGACTAAGGTCTTGTAAACAAATTATTCGATCTGGAGATCCCAACAAGGCTGCCGGAGACATCACTAGACCACCCAGGGATGTCTCTTGCAAAGAAGAATTCGTAGAGATTTTTCCAGAACCCTAGTCCAGCCTACCCGACTGATATAATCTAGAATCCACTATTCGCCTACTAATGGCTTAATCCGCTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCGAGTTCATCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTGGAGGACCAAGACATACGGAAGAACTTCATATAAAAGGAGTTCTTGCATTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAGGTTTCATCGAAACTAG

mRNA sequence

ATGACTGAAAGACTGGCCTACGACCCTTCACAGAAAAAGGGTCTCTACTTCAAGGAATTTCAGATAAGTCTTTGGTTTGACGAGGGAATGGCAGTTGTTAAAGCATGGGATAGGAATGGAGGCATTCCAGCCCAACATACTCCGATGAATGGGTCGAGAGAGATAGGGATGGGAGGCTGCAAGCACTACGGGCGGAGCAGCATAGCGCTTTCCAGAGGTGGAATCTTCGAGTTCATCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTGGAGGACCAAGACATACGGAAGAACTTCATATAAAAGGAGTTCTTGCATTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAGGTTTCATCGAAACTAG

Coding sequence (CDS)

ATGACTGAAAGACTGGCCTACGACCCTTCACAGAAAAAGGGTCTCTACTTCAAGGAATTTCAGATAAGTCTTTGGTTTGACGAGGGAATGGCAGTTGTTAAAGCATGGGATAGGAATGGAGGCATTCCAGCCCAACATACTCCGATGAATGGGTCGAGAGAGATAGGGATGGGAGGCTGCAAGCACTACGGGCGGAGCAGCATAGCGCTTTCCAGAGGTGGAATCTTCGAGTTCATCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTGGAGGACCAAGACATACGGAAGAACTTCATATAAAAGGAGTTCTTGCATTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAGGTTTCATCGAAACTAG

Protein sequence

MTERLAYDPSQKKGLYFKEFQISLWFDEGMAVVKAWDRNGGIPAQHTPMNGSREIGMGGCKHYGRSSIALSRGGIFEFILFDPKPIDLAMSRLKRALTSLGGPRHTEELHIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN
Homology
[Close]
BLAST of Bhi11G002008 vs. NCBI nr
Match: GEU33961.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 64  GRSSIALSRGGIFEFILFDPKPIDLAMSRLK-RALTSL-------------GGPRHTEEL 123
           G+   +  RGG+F+      +   L    LK RAL S+             G PR T+EL
Sbjct: 763 GQLIASRERGGLFD------RTRSLERKNLKVRALLSIERDRVDTLRRHHQGHPRRTKEL 822

Query: 124 HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN 143
           HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN
Sbjct: 823 HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN 849

[Close]
BLAST of Bhi11G002008 vs. NCBI nr
Match: GFB09406.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 101 GGPRHTEELHIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN 143
           G PR  EELHIK VLALGLALMMGRLVVLWPFCG+SSRFHRN
Sbjct: 5   GHPRCMEELHIKRVLALGLALMMGRLVVLWPFCGISSRFHRN 46

[Close]
BLAST of Bhi11G002008 vs. NCBI nr
Match: GEU76896.1 (DNA polymerase-like [Tanacetum cinerariifolium])

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 107 EELHIKGVLALGLALMMGRLVVLWPFCGLSSR 139
           E+L+  GVLALG+ALMMGRLVVLWPFCGLSSR
Sbjct: 405 EKLNTDGVLALGVALMMGRLVVLWPFCGLSSR 436

[Close]
BLAST of Bhi11G002008 vs. ExPASy TrEMBL
Match: A0A6L2JAR3 (CCHC-type domain-containing protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_005939 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 64  GRSSIALSRGGIFEFILFDPKPIDLAMSRLK-RALTSL-------------GGPRHTEEL 123
           G+   +  RGG+F+      +   L    LK RAL S+             G PR T+EL
Sbjct: 763 GQLIASRERGGLFD------RTRSLERKNLKVRALLSIERDRVDTLRRHHQGHPRRTKEL 822

Query: 124 HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN 143
           HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN
Sbjct: 823 HIKGVLALGLALMMGRLVVLWPFCGLSSRFHRN 849

[Close]
BLAST of Bhi11G002008 vs. ExPASy TrEMBL
Match: A0A6L2MSD7 (DNA-directed DNA polymerase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_048874 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 107 EELHIKGVLALGLALMMGRLVVLWPFCGLSSR 139
           E+L+  GVLALG+ALMMGRLVVLWPFCGLSSR
Sbjct: 405 EKLNTDGVLALGVALMMGRLVVLWPFCGLSSR 436

The following BLAST results are available for this feature:
BLAST of Bhi11G002008 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi11G002008 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi11G002008 vs. NCBI nr
Match NameE-valueIdentityDescription
GEU33961.12.4e-1354.84hypothetical protein [Tanacetum cinerariifolium][more]
GFB09406.14.9e-1188.10hypothetical protein [Tanacetum cinerariifolium][more]
GEU76896.16.9e-0584.38DNA polymerase-like [Tanacetum cinerariifolium][more]
BLAST of Bhi11G002008 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6L2JAR31.1e-1354.84CCHC-type domain-containing protein OS=Tanacetum cinerariifolium OX=118510 GN=Tc... [more]
A0A6L2MSD73.3e-0584.38DNA-directed DNA polymerase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_048874... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M002008Bhi11M002008mRNA