Bhi11G001986 (gene) Wax gourd (B227) v1

Overview
NameBhi11G001986
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr11: 64824945 .. 64825145 (-)
RNA-Seq ExpressionBhi11G001986
SyntenyBhi11G001986
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTAGAAGGGATAGAGATAGGGAAATTGAGAGGAAACGAGATTTTTCAACTAAGTGGCAAGATATAGCAAACATGGGAAATCGACTTGATGAACAATTAGAGCGATTTAATCGAGATATCCAAGATATCCAGTGGAGCATATCTCAACTGAACACCAATTTTCGAGGTGCACACCCACATAATCGACTTGAATAG

mRNA sequence

ATGACAACTAGAAGGGATAGAGATAGGGAAATTGAGAGGAAACGAGATTTTTCAACTAAGTGGCAAGATATAGCAAACATGGGAAATCGACTTGATGAACAATTAGAGCGATTTAATCGAGATATCCAAGATATCCAGTGGAGCATATCTCAACTGAACACCAATTTTCGAGGTGCACACCCACATAATCGACTTGAATAG

Coding sequence (CDS)

ATGACAACTAGAAGGGATAGAGATAGGGAAATTGAGAGGAAACGAGATTTTTCAACTAAGTGGCAAGATATAGCAAACATGGGAAATCGACTTGATGAACAATTAGAGCGATTTAATCGAGATATCCAAGATATCCAGTGGAGCATATCTCAACTGAACACCAATTTTCGAGGTGCACACCCACATAATCGACTTGAATAG

Protein sequence

MTTRRDRDREIERKRDFSTKWQDIANMGNRLDEQLERFNRDIQDIQWSISQLNTNFRGAHPHNRLE
Homology
[Close]
BLAST of Bhi11G001986 vs. NCBI nr
Match: KAA0039086.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK14875.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-07
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 1  MTTRRDRDREIERKRDFSTKWQDIANMGNRLDEQLERFNRDIQDIQWSISQLNTNFRGAH 60
          M  R DR++E E +      WQ IA +GNRLDE  ER NRDIQ+IQ S++Q+N N RGA 
Sbjct: 1  MENRGDREKENEAE-TLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQ 60

Query: 61 PHNR 65
          P NR
Sbjct: 61 PQNR 63

[Close]
BLAST of Bhi11G001986 vs. NCBI nr
Match: KAA0056127.1 (uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 1  MTTRRDRDREIERKRDFSTKWQDIANMGNRLDEQLERFNRDIQDIQWSISQLNTNFRGAH 60
          M  R  R++E E   D    WQ  A +GNRLDE  ++ NRDIQ+IQ SI+Q+N N RG  
Sbjct: 1  MANRGHREKENE-VGDLPALWQATAEIGNRLDEHFKQTNRDIQEIQRSITQMNVNLRGVR 60

Query: 61 PHN 64
          P N
Sbjct: 61 PQN 62

[Close]
BLAST of Bhi11G001986 vs. ExPASy TrEMBL
Match: A0A5A7TAL8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00050 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 1  MTTRRDRDREIERKRDFSTKWQDIANMGNRLDEQLERFNRDIQDIQWSISQLNTNFRGAH 60
          M  R DR++E E +      WQ IA +GNRLDE  ER NRDIQ+IQ S++Q+N N RGA 
Sbjct: 1  MENRGDREKENEAE-TLPALWQAIAKIGNRLDEHFERTNRDIQEIQRSMAQMNANPRGAQ 60

Query: 61 PHNR 65
          P NR
Sbjct: 61 PQNR 63

[Close]
BLAST of Bhi11G001986 vs. ExPASy TrEMBL
Match: A0A5A7UNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00040 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 1  MTTRRDRDREIERKRDFSTKWQDIANMGNRLDEQLERFNRDIQDIQWSISQLNTNFRGAH 60
          M  R  R++E E   D    WQ  A +GNRLDE  ++ NRDIQ+IQ SI+Q+N N RG  
Sbjct: 1  MANRGHREKENE-VGDLPALWQATAEIGNRLDEHFKQTNRDIQEIQRSITQMNVNLRGVR 60

Query: 61 PHN 64
          P N
Sbjct: 61 PQN 62

The following BLAST results are available for this feature:
BLAST of Bhi11G001986 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi11G001986 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi11G001986 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039086.13.4e-0754.69Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK14875.1 Tran... [more]
KAA0056127.13.2e-0549.21uncharacterized protein E6C27_scaffold697G00040 [Cucumis melo var. makuwa][more]
BLAST of Bhi11G001986 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TAL81.7e-0754.69Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UNE41.6e-0549.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M001986Bhi11M001986mRNA