Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA mRNA sequence
ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA Coding sequence (CDS)
ATGAAATCATTATCCAAGGCAGTTACCTTGGCTCAAAAAGCAGAAGCACACAATGAAAAGCACCCGATCTTTATTATCAGTATAAGAAAGGATTTGGCGAAAGCAGTGGTGACAAAGGGAAACAAGTCAGCATCTCAAATCAACCCACAGGTGAACAATATGAGTGAATTTTCTAAACAACAAGGAAAAGTGGATAAAATAGTAACTAAAAGTAATATTGCTAATGGTAAAGCAAACACAATTCATTGTTATAAGTGCAACCAACAAGGTCATTGTTCAAGCGAATGTCCTTTGCGAAAATAA Protein sequence
MKSLSKAVTLAQKAEAHNEKHPIFIISIRKDLAKAVVTKGNKSASQINPQVNNMSEFSKQQGKVDKIVTKSNIANGKANTIHCYKCNQQGHCSSECPLRK
Homology
BLAST of Bhi11G001985 vs. NCBI nr
Match:
KAA0039086.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK14875.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 1 MKSLSKAVTLAQKAEAHNEKHPIFIISIRKDLAKAVVT-KGNKSASQINPQV-NNMSEFS 60 MK+LSKA+TLAQKAEAHN K + RK + + + KG + ++Q P V NM S Sbjct: 199 MKTLSKAITLAQKAEAHNTKANMRYSQYRKGVGENNSSDKGKQISTQNQPTVMKNMGGSS 258 Query: 61 KQQGKVDKIVTKSNIANGKANTIHCYKCNQQGHCSSECPLRK 101 KQQ +++ K+N +AN I CYKCNQ+GH SSECPLRK Sbjct: 259 KQQERIETTANKNNNNYARANQIVCYKCNQKGHRSSECPLRK 300
BLAST of Bhi11G001985 vs. ExPASy TrEMBL
Match:
A0A5A7TAL8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00050 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 0
Query: 1 MKSLSKAVTLAQKAEAHNEKHPIFIISIRKDLAKAVVT-KGNKSASQINPQV-NNMSEFS 60 MK+LSKA+TLAQKAEAHN K + RK + + + KG + ++Q P V NM S Sbjct: 199 MKTLSKAITLAQKAEAHNTKANMRYSQYRKGVGENNSSDKGKQISTQNQPTVMKNMGGSS 258 Query: 61 KQQGKVDKIVTKSNIANGKANTIHCYKCNQQGHCSSECPLRK 101 KQQ +++ K+N +AN I CYKCNQ+GH SSECPLRK Sbjct: 259 KQQERIETTANKNNNNYARANQIVCYKCNQKGHRSSECPLRK 300
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
KAA0039086.1 2.2e-13 50.00 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK14875.1 Tran... [more]
Match Name E-value Identity Description
A0A5A7TAL8 1.1e-13 50.00 Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
A T G A A A T C A T T A T C C A A G G C A G T T A C C T T G G C T C A A A A A G C A G A A G C A C A C A A T G A A A A G C A C C C G A T C T T T A T T A T C A G T A T A A G A A A G G A T T T G G C G A A A G C A G T G G T G A C A A A G G G A A A C A A G T C A G C A T C T C A A A T C A A C C C A C A G G T G A A C A A T A T G A G T G A A T T T T C T A A A C A A C A A G G A A A A G T G G A T A A A A T A G T A A C T A A A A G T A A T A T T G C T A A T G G T A A A G C A A A C A C A A T T C A T T G T T A T A A G T G C A A C C A A C A A G G T C A T T G T T C A A G C G A A T G T C C T T T G C G A A A A T A A 50 100 150 200 250 300 Expect = 1.6E-5 / Score = 26.8 Score = 9.834029 Score = Sequence G3DSA:4.10.60.10 PS50158 SSF57756
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 4.10.60.10 coord: 48..100 e-value: 1.6E-5 score: 26.8
IPR001878 Zinc finger, CCHC-type PROSITE PS50158 ZF_CCHC coord: 83..97 score: 9.834029
IPR036875 Zinc finger, CCHC-type superfamily SUPERFAMILY 57756 Retrovirus zinc finger-like domains coord: 76..99
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0008270
zinc ion binding