Bhi11G001951 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001951
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 63717854 .. 63718303 (+)
RNA-Seq Expression	Bhi11G001951
Synteny	Bhi11G001951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATGGAGAATTTCTTACGGTCCAAAGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCTGCTGTTGGAGTTATCTTGTCAGAAGCTGACCAAAAGAAGCTAGAGGAACGAAAATTGAATGATTTCAAGGCAAAGAATTATTTATTCCAAGCCATTGATCGTGTCATCTTGGAGATCATTTTGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGGCACAACGAGGGTGAAAAGACAACAGCTCCAAGCTCTTCACAAAGAGTTCGAGATTCTTAAAATGAAGCAAGGTGAGTCCATGGATGGGCATTTCTCATGGACCTTGGCTATAGAAAACAAGATGCGTATCCATGGAGAGAAGATTGAAGATGTAGCTGTAGTTGAGAAGATTCTTCGGTCGATGGCTTCTAAATTTGCATATGTG

mRNA sequence

ATGTTGATGGAGAATTTCTTACGGTCCAAAGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCTGCTGTTGGAGTTATCTTGTCAGAAGCTGACCAAAAGAAGCTAGAGGAACGAAAATTGAATGATTTCAAGGCAAAGAATTATTTATTCCAAGCCATTGATCGTGTCATCTTGGAGATCATTTTGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGGCACAACGAGGGTGAAAAGACAACAGCTCCAAGCTCTTCACAAAGAGTTCGAGATTCTTAAAATGAAGCAAGGTGAGTCCATGGATGGGCATTTCTCATGGACCTTGGCTATAGAAAACAAGATGCGTATCCATGGAGAGAAGATTGAAGATGTAGCTGTAGTTGAGAAGATTCTTCGGTCGATGGCTTCTAAATTTGCATATGTG

Coding sequence (CDS)

ATGTTGATGGAGAATTTCTTACGGTCCAAAGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCTGCTGTTGGAGTTATCTTGTCAGAAGCTGACCAAAAGAAGCTAGAGGAACGAAAATTGAATGATTTCAAGGCAAAGAATTATTTATTCCAAGCCATTGATCGTGTCATCTTGGAGATCATTTTGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGGCACAACGAGGGTGAAAAGACAACAGCTCCAAGCTCTTCACAAAGAGTTCGAGATTCTTAAAATGAAGCAAGGTGAGTCCATGGATGGGCATTTCTCATGGACCTTGGCTATAGAAAACAAGATGCGTATCCATGGAGAGAAGATTGAAGATGTAGCTGTAGTTGAGAAGATTCTTCGGTCGATGGCTTCTAAATTTGCATATGTG

Protein sequence

MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVILEIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIENKMRIHGEKIEDVAVVEKILRSMASKFAYV

Homology

[Close]

BLAST of Bhi11G001951 vs. NCBI nr
Match: DAD38608.1 (TPA_asm: hypothetical protein HUJ06_012930 [Nelumbo nucifera])

HSP 1 Score: 231.1 bits (588), Expect = 6.3e-57
Identity = 122/148 (82.43%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 3   MENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVILEI 62
           MENFLRSKEYWTIVE GV EPA  V+LSEA+QKKLEE KL D KAK+ LFQAID  ILE 
Sbjct: 1   MENFLRSKEYWTIVEIGVAEPAPRVVLSEAEQKKLEEWKLKDLKAKSCLFQAIDHSILET 60

Query: 63  ILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIENK 122
           ILQKDT KQIWDSMKKKYQGTTRVKRQQLQAL KEFEIL MKQGES+D +FS TLAI NK
Sbjct: 61  ILQKDTYKQIWDSMKKKYQGTTRVKRQQLQALRKEFEILHMKQGESIDKYFSRTLAIVNK 120

Query: 123 MRIHGEKIEDVAVVEKILRSMASKFAYV 151
           MRIHGEK EDVAVVEKI+RSMA KF+YV
Sbjct: 121 MRIHGEKSEDVAVVEKIIRSMAPKFSYV 148

[Close]

BLAST of Bhi11G001951 vs. NCBI nr
Match: TXG72705.1 (hypothetical protein EZV62_001284 [Acer yangbiense])

HSP 1 Score: 224.2 bits (570), Expect = 7.7e-55
Identity = 113/150 (75.33%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYW IVE G+ EPA   +L+EA QKKL+E KL D KAKNYLFQAIDR IL
Sbjct: 23  MLMENFLRSKEYWIIVETGIKEPAQDEVLTEAQQKKLDELKLKDLKAKNYLFQAIDRAIL 82

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E ILQKDT KQIWDSMK+KY G+TRVKRQQLQAL K+FEIL MK+GES+D +FS TL I 
Sbjct: 83  ETILQKDTSKQIWDSMKRKYAGSTRVKRQQLQALRKDFEILHMKEGESVDEYFSRTLTIV 142

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRIHG +++DVAV+EKILRSM+ KFAYV
Sbjct: 143 NKMRIHGGQMDDVAVIEKILRSMSPKFAYV 172

[Close]

BLAST of Bhi11G001951 vs. NCBI nr
Match: KYP57183.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-53
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYW++VE G+ +PA G I++EA +K LE++KL D K KNYLFQAIDR IL
Sbjct: 1   MLMENFLRSKEYWSLVEIGITKPADGTIMTEAQRKTLEDQKLKDLKTKNYLFQAIDRTIL 60

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E IL+KDT K IWDSMK KYQGT RVKR QLQAL KEFEIL MK+GES++ +F+ TL++ 
Sbjct: 61  ETILKKDTAKDIWDSMKTKYQGTARVKRAQLQALRKEFEILHMKEGESVNDYFARTLSVA 120

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRIHGEK+EDVAVVEKILRSM  KF YV
Sbjct: 121 NKMRIHGEKLEDVAVVEKILRSMTRKFDYV 150

[Close]

BLAST of Bhi11G001951 vs. NCBI nr
Match: XP_016649728.1 (PREDICTED: uncharacterized protein LOC107881140 [Prunus mume])

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-53
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYW+++E G+ EP  GV+L+E  QKKL+E KL D KAKNYLFQAIDR IL
Sbjct: 27  MLMENFLRSKEYWSLLETGIVEPESGVVLTELQQKKLDESKLKDLKAKNYLFQAIDRSIL 86

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E ILQKDT KQIWDSMKKKYQG+T+VKR  LQAL K+FE L+MKQGES++ +FS  +AI 
Sbjct: 87  ETILQKDTSKQIWDSMKKKYQGSTKVKRSMLQALRKDFETLQMKQGESVNDYFSKAMAIA 146

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKM IHGEK+EDV +VEKILRSM +KF YV
Sbjct: 147 NKMSIHGEKMEDVTIVEKILRSMTTKFDYV 176

[Close]

BLAST of Bhi11G001951 vs. NCBI nr
Match: XP_008245036.1 (PREDICTED: uncharacterized protein LOC103343139 [Prunus mume])

HSP 1 Score: 218.0 bits (554), Expect = 5.5e-53
Identity = 109/150 (72.67%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYWT+VE G+ EP  GV+L+E  QKKL+E KL D KAKNYLFQAID  IL
Sbjct: 27  MLMENFLRSKEYWTLVETGIVEPESGVVLTELQQKKLDESKLKDLKAKNYLFQAIDCSIL 86

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E ILQKDT KQIWDSMKKKYQG+T+VKR  LQAL K+FE L+MKQGES++ +FS  +AI 
Sbjct: 87  ETILQKDTSKQIWDSMKKKYQGSTKVKRSMLQALRKDFETLQMKQGESVNDYFSKAMAIA 146

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKM IHGEK+EDV +VEKILRSM +KF YV
Sbjct: 147 NKMSIHGEKMEDVTIVEKILRSMTTKFDYV 176

[Close]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL
Match: A0A5C7IU47 (Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001284 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.7e-55
Identity = 113/150 (75.33%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYW IVE G+ EPA   +L+EA QKKL+E KL D KAKNYLFQAIDR IL
Sbjct: 23  MLMENFLRSKEYWIIVETGIKEPAQDEVLTEAQQKKLDELKLKDLKAKNYLFQAIDRAIL 82

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E ILQKDT KQIWDSMK+KY G+TRVKRQQLQAL K+FEIL MK+GES+D +FS TL I 
Sbjct: 83  ETILQKDTSKQIWDSMKRKYAGSTRVKRQQLQALRKDFEILHMKEGESVDEYFSRTLTIV 142

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRIHG +++DVAV+EKILRSM+ KFAYV
Sbjct: 143 NKMRIHGGQMDDVAVIEKILRSMSPKFAYV 172

[Close]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL
Match: A0A151SQX0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_003441 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFLRSKEYW++VE G+ +PA G I++EA +K LE++KL D K KNYLFQAIDR IL
Sbjct: 1   MLMENFLRSKEYWSLVEIGITKPADGTIMTEAQRKTLEDQKLKDLKTKNYLFQAIDRTIL 60

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E IL+KDT K IWDSMK KYQGT RVKR QLQAL KEFEIL MK+GES++ +F+ TL++ 
Sbjct: 61  ETILKKDTAKDIWDSMKTKYQGTARVKRAQLQALRKEFEILHMKEGESVNDYFARTLSVA 120

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRIHGEK+EDVAVVEKILRSM  KF YV
Sbjct: 121 NKMRIHGEKLEDVAVVEKILRSMTRKFDYV 150

[Close]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL
Match: A0A2P6PHB2 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0237911 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.0e-52
Identity = 109/150 (72.67%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENF+RSKEYW +VE  V EPA GV  +E  QKKLEE KL D KAKNYLFQAIDR +L
Sbjct: 24  MLMENFMRSKEYWCVVENEVREPAAGVAQTEVQQKKLEELKLKDLKAKNYLFQAIDRDLL 83

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E ILQKDT KQIWD+MK+KYQ +TRVKRQQLQAL KEFE+L MK+GES+D +FS TL+I 
Sbjct: 84  ETILQKDTSKQIWDAMKQKYQRSTRVKRQQLQALRKEFEVLHMKEGESVDEYFSRTLSIA 143

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKM +HG K+E+VAVVEK+LRSM SKF YV
Sbjct: 144 NKMSVHGGKLENVAVVEKVLRSMTSKFDYV 173

[Close]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL
Match: A0A392PQB8 (Resistance-like protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.6e-52
Identity = 105/150 (70.00%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFL+SKEYWT+VE G+ EPA    L+EA +K L++++L D KAKNYLFQA DR +L
Sbjct: 18  MLMENFLKSKEYWTLVETGITEPASETALTEAQKKTLDDQRLKDLKAKNYLFQAXDRAVL 77

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E IL+KDT K IWDSMKKKYQGT RVKR QLQAL KEFEIL MK+GES++ +FS TL+I 
Sbjct: 78  ETILKKDTAKDIWDSMKKKYQGTARVKRAQLQALRKEFEILHMKEGESVNDYFSRTLSIA 137

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRI+G+K+EDVAV+EKILRSM  KF YV
Sbjct: 138 NKMRINGDKLEDVAVIEKILRSMTRKFDYV 167

[Close]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL
Match: A0A2K3K2F4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g060200 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 105/150 (70.00%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MLMENFLRSKEYWTIVEAGVNEPAVGVILSEADQKKLEERKLNDFKAKNYLFQAIDRVIL 60
           MLMENFL+SKEYWT+VE G+ E A    L+EA +K L++++L D KAKNYLFQAIDR +L
Sbjct: 1   MLMENFLKSKEYWTLVETGITEHASETALTEAQKKTLDDQRLKDLKAKNYLFQAIDRAVL 60

Query: 61  EIILQKDTCKQIWDSMKKKYQGTTRVKRQQLQALHKEFEILKMKQGESMDGHFSWTLAIE 120
           E IL+KDT K IWDSMKKKYQGT RVKR QLQAL KEFEIL MK+GES++ +FS TL+I 
Sbjct: 61  ETILKKDTAKDIWDSMKKKYQGTARVKRAQLQALRKEFEILHMKEGESVNDYFSRTLSIA 120

Query: 121 NKMRIHGEKIEDVAVVEKILRSMASKFAYV 151
           NKMRI+G+K+EDVAV+EKILRSM  KF YV
Sbjct: 121 NKMRINGDKLEDVAVIEKILRSMTHKFDYV 150

The following BLAST results are available for this feature:

BLAST of Bhi11G001951 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001951 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001951 vs. NCBI nr


Match Name	E-value	Identity	Description
DAD38608.1	6.3e-57	82.43	TPA_asm: hypothetical protein HUJ06_012930 [Nelumbo nucifera]	[more]
TXG72705.1	7.7e-55	75.33	hypothetical protein EZV62_001284 [Acer yangbiense]	[more]
KYP57183.1	4.2e-53	72.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
XP_016649728.1	4.2e-53	72.00	PREDICTED: uncharacterized protein LOC107881140 [Prunus mume]	[more]
XP_008245036.1	5.5e-53	72.67	PREDICTED: uncharacterized protein LOC103343139 [Prunus mume]	[more]

BLAST of Bhi11G001951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IU47	3.7e-55	75.33	Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=E...	[more]
A0A151SQX0	2.0e-53	72.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A2P6PHB2	1.0e-52	72.67	Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7...	[more]
A0A392PQB8	6.6e-52	70.00	Resistance-like protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A2K3K2F4	1.9e-51	70.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 43..148 e-value: 8.2E-18 score: 64.5
None	No IPR available	PANTHER	PTHR34222:SF47	SUBFAMILY NOT NAMED	coord: 1..150
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001951	Bhi11M001951	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding