Bhi11G001777 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001777
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	chr11: 59376374 .. 59380519 (+)
RNA-Seq Expression	Bhi11G001777
Synteny	Bhi11G001777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAAGATCCTATAAATATCTAGTTTCTCCCCGTCGAGCCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCAGCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTTTCTCTCAATCCTTCTTCCACTCGCCTTCTTTCAAATCCTTCTTCCATTTCTTCTGTTGTTCTTCGTTCTCAAAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTTCGGAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGCAAACGAAGCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGGGTCGAGGTACTTTTCATTTTAGTGTTATATCAATTGTTTCTGTTTTCTTGAGAAACCCATTTGCTTTGCCCTAATTTTCGCGGTGTTTTTTCTTATAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCGAGTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGTTATGTAAGTGACTACACTCCTTTTACGCTTGCTTAATACTATGCATTTTTGCTTTTGGTTATGATTTATTTACTCCTTGCCAAAACAATTGTTGTAACTGTAACTCAAAGAAAAAGTAGGAAGTTATAGAGCTATCATGTTTTGAACATCAAATTACGAACGAGCAGAATTTATATTGTCGTCATAGAGAACCCATCCTAGTGATGTAGAGCTTGTAATTTGCTTCCATGGTGTTTCTTGAGGGGTAATTTTAACGTCAAAAGTTTCTTAGATTCACCTTTGTGACCCAATTACATACTGTTATCTTTCATTTTCAATCAAAGGTTTATATTGGATGTGCTTCTGGTTGATTATTCCTGGTTAACTCCTCACAGGAACTCGATGGCAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAGAAGGGATGATTCCTCTTTCAGAGGCTCCAGAAATGCTTCAAGATTCGATAACCCCAATCGTGTTCATGTGAGCAACCTTGCTTGGGGTGTTGATGATCTTACGCTTGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTACGACCGTGAGAGCGGAAAATCGAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGTAAGTTCACATTGACCCTTAATTTTTATGCATTTTTGGGGTCTGTTCTGCATTTGTATATGATGAATCTTGATATGCTCCCTCATGTTCAATTCAACCTTGCTTACTGAACTCAGGAGATAGATACCATCAAGGACCAATTGTTATGGAGATGAAATCCCGTTGTTCATATTAATCATGATTTTATTATAGCATCTTCACCCTCTAATTTCCCCGCGTAATTTTCAGTCCGTTCCTATGCATTAACAACTCTATATGAAATTCACTTCACTTGTTTCCTTCGTCGACATTCTTTTGTTGTTCCCATCCATCATGCCTGAAGAGGAGTTTTTTTATGGAAAGTTTAAGAAGAGTTTTTTTATGGAAAGTTTATCTCAGTTTATCATATTTTCCCTATAAAACTCATATCATGAATTGAATTCCCTTCAGGGATATAGATCCCTTGCTTAATGATCAAGAAGTGAATGATTTGGAATCGAGCATCTTTCATATATCTAAGTAAAAATGTGTGCATTGCAGGAGTTGAGTGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGTAGCTTTTATTTATAAAGAATTAACGTGGTTTTTTGGGCTCTTACAGTAACCTTATTTTTCTAAGGTATGTTCTCCGATAGTAAATGGTGCCAAATGATTTAGTGTACTTTCTCTATGATCAATGGTATTTGATTCTTTTTCCCTTCTGAATTTGCATTCAACTAAGATTAAAAACTTCATATGTTTTAAAAGGCGTTTAAGGTGTAAGTATTAGGCTCCGATATTGTGCTTAAGGCTCTGTGCCTTCAACATATAAAATTGAGGCAGGTGCCTACGCCTCTATATTGTCTTGATTCAAGATGGCATATTAGGGACTAGGGGTGAAATTGATTTGTCTCTGCTTGGTTTGAGTGCCAAGTCGAAATCGAACAGATGAGAATATTGAAGAAATATGAAAAACCAACCTCTAACTGCTCACATAAAGCTTACAAACTGCAACAAACCAATTACCCGACCGGGTTACTGACTGAGAAGCATGAGTGTTAGGCTGCTACGATAGGTCACATGAATGCAAATTGGAAGGAAAAAATGTTGAATATTTTACCTTCTGATGTGGTCAAACGAAGGCCTTGCATATTACAAGGAGACTTCATAGCCAACTGCGTCACTGATCCGTTACTTTTACGAGTTTCAAAATGTAATATAAATGCAATCGGTTAGTTCGGGTGTATCCTGTTTAGTTCACTAGAACCCGAAATTTATCCCAAACCGACCTGGTTCCAACTCGAACCGAATGGTGGGCTTCAGTTGATTAGAGCAATATTTTTTTGGTTTTTTCCTTGCAGGCGGACTCCACTGTTTGTCCAGCGTTACTACTAAAAAAACCCGGTATTTCATACAGCCCATGAGTTATTTTTTGTTACCTACTTTAAAACAAAATTTCAAAAAAAAGCTACATTTTGAAAGTTATAAAATAAAAAGTTATACTAATGAAACTTAGTTTGTTTCTAAGATTTTAAGGTGTAGATGACAAAACAAGCTTATAGGTAAAAATAGTGTTTATAAATTTACCTTGCGAAACCGACAACAAATAACTATAAGCTTCATTAGAACAACTTTTTTATTTTCTAAAATTTGGTCTCGGTTGTATATCATTAGAAATTTGAGCAACGGCTTCAAATACACTTTCAAGAAGGATCTTTGGTCTTTTTGGATGCTCTACTTGATCAAGCCAATGGTGTTTAGCTGAGTCACGATTCAGACTCCCACAGTGGACAGTAGTGGGAAATCTTGCACAATGATTCAACAATATCTTGTAATTATAAGCTTAACTTTCATAAATAAAAAATTAGAAAAACAAAAATAAAACAAAAAATAAAATTCGTTATCAAACGAGATTAAGGTAAAAAATAAATAAAATTAAGAGAAGTTGTTATGTATAGCAAGAAATCGACACCCAACAAAAAAAATTTAGTCTAGATCAACTGACATGAAGCTTGACATAGAAACTGAAAAATAGTCGATAATAAAACCTATTGATATTTGATAACTTGTAGAGATATAAATTATGGTTCTCTCAAAATTGGAATAATTAGGATTAAAGTGATGTAAACGCATTCATAATAAAGGAAAATGCATGGAATTATATATGTGTGTGTGTGATAGGCCCATGCAAAAATATCCTTTAAGTAAAAAACTGCATCACTAATGCAAGTGTCGCAGACAAAGCCAATGCAAGGAGCATGCATCCAGTTGATCTGACGTATGATAAGATACATTTGGCTTGTGCAATCAACGTCAAATCATAACTTGCAAGCATGAACATCTGACTAGCGGCGTTTGATCAAGGTAGAATGACAGGCGACTGTTTCAGGGTATGGAATTCATCACCAAGTAGCTGTTCTGATTGCTTATATAAAGAGATGTTGTCTACAGTTGAAAAAAATAGCGAGATTAGTTATAGAGGTAAACCATTTTGATCCTTCATCTTCGCTGGCTGCAAGAAAGAAATAGGAAAGATGATTGCCATTTTCCACCATTGGTAATGAGGTGATGTCGGAGAAAAGCTCGAGAGAGGCATCTCCTTCACCCCTTCTACCTAGTTGTCAACAACAAGTACAAAAACAAGCCAAAGGGGGCAAGAGATTAAACCTGGTGATTTGACTTCTTTCTTTTACTTAGCATCCCAGCTGCTTGACTTCTTTCTTTTACTTAGCATTTTC

mRNA sequence

GAAAAAAAGATCCTATAAATATCTAGTTTCTCCCCGTCGAGCCTTCTCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCAGCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTTTCTCTCAATCCTTCTTCCACTCGCCTTCTTTCAAATCCTTCTTCCATTTCTTCTGTTGTTCTTCGTTCTCAAAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTTCGGAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGCAAACGAAGCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGGGTCGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCGAGTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGTTATGAACTCGATGGCAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAGAAGGGATGATTCCTCTTTCAGAGGCTCCAGAAATGCTTCAAGATTCGATAACCCCAATCGTGTTCATGTGAGCAACCTTGCTTGGGGTGTTGATGATCTTACGCTTGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTACGACCGTGAGAGCGGAAAATCGAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGAGTTGAGTGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGAGTATCAGTAGCTTTTATTTATAAAGAATTAACGTGGTTTTTTGGGCTCTTACAGTAACCTTATTTTTCTAAGACAAAGCCAATGCAAGGAGCATGCATCCAGTTGATCTGACGTATGATAAGATACATTTGGCTTGTGCAATCAACGTCAAATCATAACTTGCAAGCATGAACATCTGACTAGCGGCGTTTGATCAAGGTAGAATGACAGGCGACTGTTTCAGGGTATGGAATTCATCACCAAGTAGCTGTTCTGATTGCTTATATAAAGAGATGTTGTCTACAGTTGAAAAAAATAGCGAGATTAGTTATAGAGGTAAACCATTTTGATCCTTCATCTTCGCTGGCTGCAAGAAAGAAATAGGAAAGATGATTGCCATTTTCCACCATTGGTAATGAGGTGATGTCGGAGAAAAGCTCGAGAGAGGCATCTCCTTCACCCCTTCTACCTAGTTGTCAACAACAAGTACAAAAACAAGCCAAAGGGGGCAAGAGATTAAACCTGGTGATTTGACTTCTTTCTTTTACTTAGCATCCCAGCTGCTTGACTTCTTTCTTTTACTTAGCATTTTC

Coding sequence (CDS)

ATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCAGCCCTAACCCTCAAAACCCTATCTCTTTCTAACCCTAAAATCAAACTCTTTTCTCTCAATCCTTCTTCCACTCGCCTTCTTTCAAATCCTTCTTCCATTTCTTCTGTTGTTCTTCGTTCTCAAAGGGTTTCTCCTCCCTTCTCCTCTCGCTTTGTTCGGAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGCAAACGAAGCTAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCTCAACTCGCCGGCTTGTTCGAAAGCGCCGGACAAGTTGAAAGGGTCGAGGTAATTTATGACAAGACGACGGGACGAAGCAGGGGATTTGGTTTTGTCACAATGTCGAGTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGTTATGAACTCGATGGCAGATCACTGAGGGTAAATTATGGACCCCCTCCACCGAGAAGGGATGATTCCTCTTTCAGAGGCTCCAGAAATGCTTCAAGATTCGATAACCCCAATCGTGTTCATGTGAGCAACCTTGCTTGGGGTGTTGATGATCTTACGCTTGAGAACTTGTTTAGGGAACATGGAAATGTTGTGGAGGCAAAAGTAGTTTACGACCGTGAGAGCGGAAAATCGAGGGGCTTTGGTTTCGTAACATTTAATTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGCTGAGTTGAGTGGAAGACCCATCCGAGTAACACAAGCCGAAGCAAGGCCGCCAAGGCGCCAGTTTTGA

Protein sequence

MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSSRFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFRGSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF

Homology

[Close]

BLAST of Bhi11G001777 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 300.1 bits (767), Expect = 1.9e-81
Identity = 172/292 (58.90%), Postives = 211/292 (72.26%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           M+ASA+SL LS+   K+L     +    SL   S     N  S+S  +      SP  +S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-SP--AS 60

Query: 61  RFVRNVAVSSDYDQEEDTLE--ADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQV 120
           RF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSS 180
           E VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPP+R+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FRGSRNA-------------SRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVY 240
            RG R++             S   + NRV+V NL+WGVDD+ LE+LF E G VVEA+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRESGKSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           DR+SG+S+GFGFVT++S++EV NAI+SLDGA+L GR IRV++AEARPPRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Bhi11G001777 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 274.6 bits (701), Expect = 8.5e-74
Identity = 171/344 (49.71%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQ-RVSPP-- 60
           MSASA+S  LSA   K+L L   +    S+ P S     +   + S+   S  + S P  
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLEADANEA------SYAPDLKLFVGNLPFSVDSAQLAGL 120
           + SRFVRNVAVSSD++ EED + AD +++      S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PRRDDSSFRGSR------------------------------------------------ 240
           P+R++S  RG R                                                
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ----------NASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSR 278
                     + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of Bhi11G001777 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 274.6 bits (701), Expect = 8.5e-74
Identity = 171/344 (49.71%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQ-RVSPP-- 60
           MSASA+S  LSA   K+L L   +    S+ P S     +   + S+   S  + S P  
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLEADANEA------SYAPDLKLFVGNLPFSVDSAQLAGL 120
           + SRFVRNVAVSSD++ EED + AD +++      S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PRRDDSSFRGSR------------------------------------------------ 240
           P+R++S  RG R                                                
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ----------NASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSR 278
                     + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of Bhi11G001777 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 274.6 bits (701), Expect = 8.5e-74
Identity = 171/344 (49.71%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQ-RVSPP-- 60
           MSASA+S  LSA   K+L L   +    S+ P S     +   + S+   S  + S P  
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLEADANEA------SYAPDLKLFVGNLPFSVDSAQLAGL 120
           + SRFVRNVAVSSD++ EED + AD +++      S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PRRDDSSFRGSR------------------------------------------------ 240
           P+R++S  RG R                                                
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ----------NASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSR 278
                     + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of Bhi11G001777 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 262.3 bits (669), Expect = 4.4e-70
Identity = 171/365 (46.85%), Postives = 212/365 (58.08%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQ-RVSPP-- 60
           MSASA+S  LSA   K+L L   +    S+ P S     +   + S+   S  + S P  
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLEADANEA------SYAPDLKLFVGNLPFSVDSAQLAGL 120
           + SRFVRNVAVSSD++ EED + AD +++      S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGY--------------- 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGY               
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180

Query: 181 ------ELDGRSLRVNYGPPPPRRDDSSFRGSR--------------------------- 240
                 E +GR LRVN GPPPP+R++S  RG R                           
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240

Query: 241 -------------------------------NASRFDNPNRVHVSNLAWGVDDLTLENLF 278
                                          + S   + NR++V NL+WGVDD+ LENLF
Sbjct: 241 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 300

[Close]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.3e-84
Identity = 182/287 (63.41%), Postives = 212/287 (73.87%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNP-----KIKLFSLNPSSTRL-LSNPSSISSVVLRSQRV 60
           M++SA+SL   +LT +TL L  P      +  FSL PSS  L LS+ SS           
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSC---------- 60

Query: 61  SPPFSSRFVRNVAVSSDYDQEEDTLEAD---ANEASYAPDLKLFVGNLPFSVDSAQLAGL 120
              FSSRFVR V + SD+DQ ED  + D     E +++PDLK+FVGNLPFS DSA LA L
Sbjct: 61  ---FSSRFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAEL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FE AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PRRDDSSFR-GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESG 240
            +R++SSFR GSR    FD+ NRV+V NLAWGVD   LE LF E G VV+AKVVYDR+SG
Sbjct: 181 EKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 240

Query: 241 KSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           +SRGFGFVT++SAEEVNNAI+SLDG +L+GR IRV+ AEARPPRRQF
Sbjct: 241 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 9.8e-83
Identity = 181/293 (61.77%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNP-----KIKLFSLNPSSTRL-LSNPSSISSVVLRSQRV 60
           M++SA+SL   +LT +TL L  P      +  FSL PSS  L LS+PSS           
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSC---------- 60

Query: 61  SPPFSSRFVRNVAVSSDYDQEEDTLEAD---ANEASYAPDLKLFVGNLPFSVDSAQLAGL 120
              FSSRFVR V +  D+DQ ED  + D     E +++PDLK+FVGNL FS DSA LA L
Sbjct: 61  ---FSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAEL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FE AG VE VEVIYDK TGRSRGFGFVTMSS +EVEAA QQFNGYELDGR+LRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PRRDDSSFR-------GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVV 240
            +R++SSFR       GSR    FD+ NRV+V NLAWGVD   LE LF E G VV+AKVV
Sbjct: 181 EKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVV 240

Query: 241 YDRESGKSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           YDR+SG+SRGFGFVT++SAEEVNNAI+SLDG +L+GR IRV+ AEARPPRRQF
Sbjct: 241 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

[Close]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.7e-80
Identity = 172/292 (58.90%), Postives = 211/292 (72.26%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           M+ASA+SL LS+   K+L     +    SL   S     N  S+S  +      SP  +S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-SP--AS 60

Query: 61  RFVRNVAVSSDYDQEEDTLE--ADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQV 120
           RF RNVA++S+++ EED     A   E S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSS 180
           E VEVIYDK TGRSRGFGFVTMSSV EVEAAAQQFNGYELDGR LRVN GPPPP+R+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FRGSRNA-------------SRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVY 240
            RG R++             S   + NRV+V NL+WGVDD+ LE+LF E G VVEA+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRESGKSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           DR+SG+S+GFGFVT++S++EV NAI+SLDGA+L GR IRV++AEARPPRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

[Close]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-72
Identity = 171/344 (49.71%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQ-RVSPP-- 60
           MSASA+S  LSA   K+L L   +    S+ P S     +   + S+   S  + S P  
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  FSSRFVRNVAVSSDYDQEEDTLEADANEA------SYAPDLKLFVGNLPFSVDSAQLAGL 120
           + SRFVRNVAVSSD++ EED + AD +++      S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS+  EVEAAAQQFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PRRDDSSFRGSR------------------------------------------------ 240
           P+R++S  RG R                                                
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 ----------NASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSR 278
                     + S   + NR++V NL+WGVDD+ LENLF E G VVEA+V+YDR+SG+S+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.5e-72
Identity = 165/298 (55.37%), Postives = 202/298 (67.79%), Query Frame = 0


Query: 2   SASAASLTLSALTLKTLSLSNPK--IKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFS 61
           S+S +SL    +T +T S   P   +  FSL  SS  L     S+SS  +       PF 
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLNL-----SLSSSSIGHSASIKPFE 62

Query: 62  SRFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 121
           S F   VA+ SD+DQ ED +E  A +  ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSF 181
            VEVIYDK +GRSRGFGFVTMS+ +EVEAA QQFNGYE+DGR++RVN GP P +R++SSF
Sbjct: 123 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 RGSRNAS--------------------RFDNPNRVHVSNLAWGVDDLTLENLFREHGNVV 241
            G R  +                      D+ NRV+V NL+WGVDDL L+ LF E GNVV
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVYDRESGKSRGFGFVTFNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           +AKVVYDR+SG+SRGFGFVT++SA+EVN+AI SL+G +L GR IRV+ AE R PRRQF
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

[Close]

BLAST of Bhi11G001777 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 527.3 bits (1357), Expect = 7.8e-146
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 277

[Close]

BLAST of Bhi11G001777 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 466.1 bits (1198), Expect = 2.1e-127
Identity = 246/278 (88.49%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSST-RLLSNPSSISSVVLRSQRVSPPFS 60
           MSASAASLTL +LTLKTLS SNPK KLFSLNPSS+ RLLSNP SISS +L S RVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE D +++SYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPP+RDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVT 240
           RGSRNASRFDN NRVHVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SGKSRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 FNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           +NSAEEVN AIQSLDG +L GRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of Bhi11G001777 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 464.2 bits (1193), Expect = 8.1e-127
Identity = 245/277 (88.45%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASAASLTLS+LTLKTLSLSNPK KLFSLNPSS+  L NP SISS VL S RVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +++ YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPP+RDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRNASRFDN NRVHVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G +L GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Bhi11G001777 vs. NCBI nr
Match: XP_023528633.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.1 bits (1128), Expect = 2.8e-119
Identity = 228/277 (82.31%), Postives = 247/277 (89.17%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSS RLLSNP S+SS+VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+D +E+SYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPP+RDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRN+S FD PNRVHVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESG+SRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGA+L+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Bhi11G001777 vs. NCBI nr
Match: XP_022935473.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 436.4 bits (1121), Expect = 1.8e-118
Identity = 227/277 (81.95%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSS RL SNP S+SS+VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+D +E+SYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPP+RDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRN+S FD PNRVHVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESG+SRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGA+L+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 1.0e-127
Identity = 246/278 (88.49%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSST-RLLSNPSSISSVVLRSQRVSPPFS 60
           MSASAASLTL +LTLKTLS SNPK KLFSLNPSS+ RLLSNP SISS +L S RVSPPFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE D +++SYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSF 180
           RVEVIYDKTTGRSRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVNYGPPPP+RDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVT 240
           RGSRNASRFDN NRVHVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SGKSRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 FNSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           +NSAEEVN AIQSLDG +L GRPIRVTQAEARPPRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

[Close]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.9e-127
Identity = 245/277 (88.45%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASAASLTLS+LTLKTLSLSNPK KLFSLNPSS+  L NP SISS VL S RVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +++ YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPP+RDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRNASRFDN NRVHVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G +L GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.9e-127
Identity = 245/277 (88.45%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASAASLTLS+LTLKTLSLSNPK KLFSLNPSS+  L NP SISS VL S RVS PFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +++ YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPP+RDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRNASRFDN NRVHVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAEEVNNAIQSL+G +L GR IRVTQAEA+PPRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

[Close]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL
Match: A0A6J1FAM3 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442336 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 8.8e-119
Identity = 227/277 (81.95%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSS RL SNP S+SS+VLRS RVSPP SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLPSNPISVSSLVLRSSRVSPPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+D +E+SYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEV+YDK TGRSRGF FVTMSS DE EAAAQQFNGYEL+GRSLRVN GPPPP+RDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSSADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRN+S FD PNRVHVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESG+SRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGA+L+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

[Close]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL
Match: A0A6J1J9K2 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482509 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.6e-118
Identity = 226/277 (81.59%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60
           MSASA S TLS  TLKTLSLSNPKIKLF LNPSS RLLSNP S+SS+VLRS RVS P SS
Sbjct: 1   MSASATSFTLSPSTLKTLSLSNPKIKLFPLNPSSIRLLSNPISVSSLVLRSSRVSTPLSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD++QEE   E+D +E+SYAPD KLFVGNLPFSVDSAQLAGLFESAGQVE 
Sbjct: 61  RFVRNVAVSSDFEQEESIFESDGDESSYAPDPKLFVGNLPFSVDSAQLAGLFESAGQVEM 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180
           VEV+YDK TGRSRGF FVTMS+ DE EAAAQQFNGYEL+GRSLRVN GPPPP+RDD SFR
Sbjct: 121 VEVVYDKMTGRSRGFAFVTMSNADEAEAAAQQFNGYELEGRSLRVNNGPPPPKRDDFSFR 180

Query: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240
           GSRN+S FD PNRVHVSNLAWGVDD  LEN FR+ G+VVEAKVVYDRESG+SRGFGFVTF
Sbjct: 181 GSRNSSNFDKPNRVHVSNLAWGVDDHALENFFRQQGDVVEAKVVYDRESGRSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLDGAELSGRPIRVTQAEARPPRRQF 278
           NSAE+V NAIQSLDGA+L+GR +RV+ AEARPPRRQF
Sbjct: 241 NSAEDVTNAIQSLDGADLNGRSVRVSPAEARPPRRQF 277

The following BLAST results are available for this feature:

BLAST of Bhi11G001777 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	1.9e-81	58.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	8.5e-74	49.71	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	8.5e-74	49.71	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	8.5e-74	49.71	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	4.4e-70	46.85	chloroplast RNA-binding protein 29	[more]

BLAST of Bhi11G001777 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	2.3e-84	63.41	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	9.8e-83	61.77	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	2.7e-80	58.90	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	1.2e-72	49.71	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	3.5e-72	55.37	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Bhi11G001777 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905951.1	7.8e-146	100.00	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_004137828.1	2.1e-127	88.49	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_008442686.1	8.1e-127	88.45	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_023528633.1	2.8e-119	82.31	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935473.1	1.8e-118	81.95	29 kDa ribonucleoprotein A, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Bhi11G001777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAY6	1.0e-127	88.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A5A7TQA3	3.9e-127	88.45	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	3.9e-127	88.45	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A6J1FAM3	8.8e-119	81.95	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J9K2	2.6e-118	81.59	29 kDa ribonucleoprotein A, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 193..266 e-value: 2.2E-26 score: 103.7 coord: 93..166 e-value: 5.9E-28 score: 108.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..264 e-value: 1.6E-18 score: 66.3 coord: 94..164 e-value: 7.4E-20 score: 70.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..270 score: 19.860046
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.58716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 63..187 e-value: 1.2E-30 score: 108.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 188..277 e-value: 5.9E-26 score: 93.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..187
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..274
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..274
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 1.28061E-33 score: 115.403
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 188..276
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 86..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001777	Bhi11M001777	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding