Bhi11G001284 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001284
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	zinc finger protein CONSTANS-LIKE 4
Location	chr11: 43402049 .. 43402714 (-)
RNA-Seq Expression	Bhi11G001284
Synteny	Bhi11G001284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCGAGGGACAGAAACAACAACAACCAGTTAATTGCACTGAAGAAGGTAAGATCCACAACCCAGTGCAATCACAATCAATTTAATACACACACCAAAAAAAAATTTTCAATCACAAGATGAAGAATAAACAACAATTAATGACTGTAACAACAAGAAACCCGACCATTAATGAGATAACAACAAGGAACTCAGTTTAAAGCCAGACAACAATTCCCATCACAAGAACAGGAAATTCATTATTGGGTCAATAGAATTAATAAGTTCAAATACCCTAGTAAGTGAGATTACCTGAAATATCAGAAATATCAGCGAACAAAACCACAATGGGGACAGAAGGTTGAATCACGTTTCGACCAAAACCAGAATTCCCCGAGGATCGTTACTTCTACAATGACCGTGATAGAGAGAAAGAGATAGGAGAGGAAGGCGCCTGCATAAATGTAATAATCCATAAGAGGCTACAAAACAGAGCTATAAGTAAAGAAAACAGAGGAAAGACCGCCCCGAAGCACAGCATCACCCACCTTAAAGTCTGGCATGCAATCAACTTCCTCGATGACCGTCACTTCTCCGATGTCGACGCGGATACTGCCGATGTTAGCAGAGAAGAGGGCGAGCCTAATTCCTGGCTTATCCCACGTCGACTTCACGGTGATTGA

mRNA sequence

ATGGCACTCGAGGGACAGAAACAACAACAACCAGTTAATTGCACTGAAGAAGAATTCCCCGAGGATCGTTACTTCTACAATGACCGTGATAGAGAGAAAGAGATAGGAGAGGAAGGCGCCTGCATAAATGTAATAATCCATAAGAGGCTACAAAACAGAGCTATAAGTAAAGAAAACAGAGGAAAGACCGCCCCGAAGCACAGCATCACCCACCTTAAAGTCTGGCATGCAATCAACTTCCTCGATGACCGTCACTTCTCCGATGTCGACGCGGATACTGCCGATGTTAGCAGAGAAGAGGGCGAGCCTAATTCCTGGCTTATCCCACGTCGACTTCACGGTGATTGA

Coding sequence (CDS)

ATGGCACTCGAGGGACAGAAACAACAACAACCAGTTAATTGCACTGAAGAAGAATTCCCCGAGGATCGTTACTTCTACAATGACCGTGATAGAGAGAAAGAGATAGGAGAGGAAGGCGCCTGCATAAATGTAATAATCCATAAGAGGCTACAAAACAGAGCTATAAGTAAAGAAAACAGAGGAAAGACCGCCCCGAAGCACAGCATCACCCACCTTAAAGTCTGGCATGCAATCAACTTCCTCGATGACCGTCACTTCTCCGATGTCGACGCGGATACTGCCGATGTTAGCAGAGAAGAGGGCGAGCCTAATTCCTGGCTTATCCCACGTCGACTTCACGGTGATTGA

Protein sequence

MALEGQKQQQPVNCTEEEFPEDRYFYNDRDREKEIGEEGACINVIIHKRLQNRAISKENRGKTAPKHSITHLKVWHAINFLDDRHFSDVDADTADVSREEGEPNSWLIPRRLHGD

Homology

[Close]

BLAST of Bhi11G001284 vs. NCBI nr
Match: XP_023547181.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. NCBI nr
Match: XP_022962363.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. NCBI nr
Match: XP_008445288.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. NCBI nr
Match: XP_038884657.1 (zinc finger protein CONSTANS-LIKE 4 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. NCBI nr
Match: KAA0064869.1 (zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL
Match: A0A6J1K9B3 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492279 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL
Match: A0A5A7VHC1 (Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001820 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL
Match: A0A0A0LSP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383330 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL
Match: A0A6J1HEL1 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111462832 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

[Close]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL
Match: A0A1S3BBV1 (zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103488365 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 77  AINFLDDRHFSDVDADTADVSREEGEPNSWLIP 110
           AINFLDDR+FSDVDAD ADVSREE E  SWL+P
Sbjct: 111 AINFLDDRYFSDVDADAADVSREEAEAASWLLP 143

The following BLAST results are available for this feature:

BLAST of Bhi11G001284 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001284 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001284 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547181.1	1.9e-05	81.82	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962363.1	1.9e-05	81.82	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]	[more]
XP_008445288.1	1.9e-05	81.82	PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo]	[more]
XP_038884657.1	1.9e-05	81.82	zinc finger protein CONSTANS-LIKE 4 [Benincasa hispida]	[more]
KAA0064869.1	1.9e-05	81.82	zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa]	[more]

BLAST of Bhi11G001284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9B3	9.3e-06	81.82	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7VHC1	9.3e-06	81.82	Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0A0LSP8	9.3e-06	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G383330 PE=3 SV=1	[more]
A0A6J1HEL1	9.3e-06	81.82	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BBV1	9.3e-06	81.82	zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103488365 PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001284	Bhi11M001284	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding