Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGTCATACTGATGAAGAGGCAATACTGGAGTTCTTACAGTCCGAGCCCATTGGCACATCATCCTCTGTGGGAGATAATACAG GTTATTTTATAGTCACATGTTTATATAAACTAATGTTTCATTAAACTAACGGTGAATAATTTTTGCAGATTCTGGTAATACGACTACTAGGGCTGGACGTGGATACTCTCGAAATGTTGATATGGATAAATATGTTCAACAATTCGGGAAAATTCCTATCGAGATTGACCCTGAATGGTAG mRNA sequence
ATGGTAGGTCATACTGATGAAGAGGCAATACTGGAGTTCTTACAGTCCGAGCCCATTGGCACATCATCCTCTGTGGGAGATAATACAGATTCTGGTAATACGACTACTAGGGCTGGACGTGGATACTCTCGAAATGTTGATATGGATAAATATGTTCAACAATTCGGGAAAATTCCTATCGAGATTGACCCTGAATGGTAG Coding sequence (CDS)
ATGGTAGGTCATACTGATGAAGAGGCAATACTGGAGTTCTTACAGTCCGAGCCCATTGGCACATCATCCTCTGTGGGAGATAATACAGATTCTGGTAATACGACTACTAGGGCTGGACGTGGATACTCTCGAAATGTTGATATGGATAAATATGTTCAACAATTCGGGAAAATTCCTATCGAGATTGACCCTGAATGGTAG Protein sequence
MVGHTDEEAILEFLQSEPIGTSSSVGDNTDSGNTTTRAGRGYSRNVDMDKYVQQFGKIPIEIDPEW
Homology
BLAST of Bhi11G001256 vs. ExPASy TrEMBL
Match:
A0A5A7TMA0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00530 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 5.0e-04
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 1 MVGHTDE--EAILEFLQSEPIGTSSSVGDNTDSGNTTTRAGRGYSRNVDMDKYVQQFGKI 60 M G D+ EA EF +P+ SS D +D + +R RGYSRN+++DK+V++FG+I Sbjct: 1 MAGLLDDNHEAKDEFGNFDPLSMGSSTRDTSDGSSMVSRI-RGYSRNIELDKHVERFGRI 60 Query: 61 PIEIDPEW 67 PIE+ E+ Sbjct: 61 PIEMSIEF 67
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7TMA0 5.0e-04 42.65 CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
A T G G T A G G T C A T A C T G A T G A A G A G G C A A T A C T G G A G T T C T T A C A G T C C G A G C C C A T T G G C A C A T C A T C C T C T G T G G G A G A T A A T A C A G A T T C T G G T A A T A C G A C T A C T A G G G C T G G A C G T G G A T A C T C T C G A A A T G T T G A T A T G G A T A A A T A T G T T C A A C A A T T C G G G A A A A T T C C T A T C G A G A T T G A C C C T G A A T G G T A G 20 40 60 80 100 120 140 160 180 200 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 16..41
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 14..43
Relationships
The following mRNA feature(s) are a part of this gene: