Bhi11G001145 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001145
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA polymerase
Location	chr11: 39433073 .. 39433597 (-)
RNA-Seq Expression	Bhi11G001145
Synteny	Bhi11G001145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATGATGAATCACGAACATAATAATTTCTGGTATCACACCCTTCTCAAAGGAACCATACGTGACACTCTCGCCTCATACGGCTCCGTCCCGGCATCAGGACCTCCCCTTTCCTTTGACCAACGAGTCCTCAAACCAACTTGTCCTTCCTGCCTGAAAGGTTCAATCCCTTATGAGATTATTAATTTGGATTATCTGACTACTGATAAGGATTATCTTTTAAATGAGAAAAAAGAGAAAATATATATAAATTGTAAGGAGAAGAGACATAGGGAATTGTGTGAGTATATGAAGCAGGACATCCTTCTGCTTGGTGGTGTAATGCAAAAAGCTCAAGAGATCTATTGGAATCTCTATAACGTGGACATAGAAAGTAAAATAGGCTTAGTAAAGCAATATGAGACTCTTCCTGATCAAATCTTTGAATCGAGATCCCCCTTGGTCCTCAATAAGGGAAGTAGCACTAAGAACAGCGGAGGAACGCGATACAATACAAAACACCCATGTTACTTACCACACACCTGA

mRNA sequence

TGGATGATGAATCACGAACATAATAATTTCTGGTATCACACCCTTCTCAAAGGAACCATACGTGACACTCTCGCCTCATACGGCTCCGTCCCGGCATCAGGACCTCCCCTTTCCTTTGACCAACGAGTCCTCAAACCAACTTGTCCTTCCTGCCTGAAAGGTTCAATCCCTTATGAGATTATTAATTTGGATTATCTGACTACTGATAAGGATTATCTTTTAAATGAGAAAAAAGAGAAAATATATATAAATTGTAAGGAGAAGAGACATAGGGAATTGTGTGAGTATATGAAGCAGGACATCCTTCTGCTTGGTGGTGTAATGCAAAAAGCTCAAGAGATCTATTGGAATCTCTATAACGTGGACATAGAAAGTAAAATAGGCTTAGTAAAGCAATATGAGACTCTTCCTGATCAAATCTTTGAATCGAGATCCCCCTTGGTCCTCAATAAGGGAAGTAGCACTAAGAACAGCGGAGGAACGCGATACAATACAAAACACCCATGTTACTTACCACACACCTGA

Coding sequence (CDS)

TGGATGATGAATCACGAACATAATAATTTCTGGTATCACACCCTTCTCAAAGGAACCATACGTGACACTCTCGCCTCATACGGCTCCGTCCCGGCATCAGGACCTCCCCTTTCCTTTGACCAACGAGTCCTCAAACCAACTTGTCCTTCCTGCCTGAAAGGTTCAATCCCTTATGAGATTATTAATTTGGATTATCTGACTACTGATAAGGATTATCTTTTAAATGAGAAAAAAGAGAAAATATATATAAATTGTAAGGAGAAGAGACATAGGGAATTGTGTGAGTATATGAAGCAGGACATCCTTCTGCTTGGTGGTGTAATGCAAAAAGCTCAAGAGATCTATTGGAATCTCTATAACGTGGACATAGAAAGTAAAATAGGCTTAGTAAAGCAATATGAGACTCTTCCTGATCAAATCTTTGAATCGAGATCCCCCTTGGTCCTCAATAAGGGAAGTAGCACTAAGAACAGCGGAGGAACGCGATACAATACAAAACACCCATGTTACTTACCACACACCTGA

Protein sequence

WMMNHEHNNFWYHTLLKGTIRDTLASYGSVPASGPPLSFDQRVLKPTCPSCLKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILLLGGVMQKAQEIYWNLYNVDIESKIGLVKQYETLPDQIFESRSPLVLNKGSSTKNSGGTRYNTKHPCYLPHT

Homology

[Close]

BLAST of Bhi11G001145 vs. NCBI nr
Match: KAB1227947.1 (hypothetical protein CJ030_MR1G013827 [Morella rubra])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 8  NNFWYHTLLKGTIRDTLASYGSVPASGPPLSFDQRVLKPTCPSCL 53
          + +WYHTLLKGT+RDTLASYGSVP SGPPLSFDQRVL+PTCP  L
Sbjct: 11 DRWWYHTLLKGTVRDTLASYGSVPESGPPLSFDQRVLEPTCPPFL 55

[Close]

BLAST of Bhi11G001145 vs. NCBI nr
Match: CAD1821792.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-10
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 45  KPTCPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILL 104
           K  CP    KGSIPY+ + L  LT++         +K+Y+           +YMKQDILL
Sbjct: 212 KNLCPGLGEKGSIPYDEVRLSNLTSN---------QKVYL-----------DYMKQDILL 271

Query: 105 LGGVMQKAQEIYWNLYNVDIESKIGL 130
           LGGVMQKAQEIYW LY VDIESKI L
Sbjct: 272 LGGVMQKAQEIYWKLYKVDIESKITL 277

[Close]

BLAST of Bhi11G001145 vs. NCBI nr
Match: EEF27662.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 8  NNFWYHTLLKGTIRDTLASYGSVPASG-PPLSFDQRVLKPT-----CPSCLKGS 56
          + +WYHTLLKGT+RDTLASYGS P SG PP SFDQRVL+PT      P  LKGS
Sbjct: 11 DRWWYHTLLKGTVRDTLASYGSAPESGPPPFSFDQRVLEPTFPALDAPPTLKGS 64

[Close]

BLAST of Bhi11G001145 vs. NCBI nr
Match: KAG0450457.1 (hypothetical protein HPP92_026900 [Vanilla planifolia])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 48  CPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILLLGG 107
           CP    KGSIPYE + L  L + K+ LL                    +YMKQDILLLGG
Sbjct: 142 CPDLGQKGSIPYEKVELSNLASMKNGLL--------------------DYMKQDILLLGG 201

Query: 108 VMQKAQEIYWNLYNVDIESKIGL 130
           VM+ AQEIYW LYNVDIESKI L
Sbjct: 202 VMKNAQEIYWKLYNVDIESKITL 204

[Close]

BLAST of Bhi11G001145 vs. NCBI nr
Match: KAG0450557.1 (hypothetical protein HPP92_026679 [Vanilla planifolia])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 44/83 (53.01%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 48  CPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILLLGG 107
           CP    KGSIPYE + L  L + K+ LL                    +YMKQDILLLGG
Sbjct: 193 CPDLGQKGSIPYEKVELSNLASMKNGLL--------------------DYMKQDILLLGG 252

Query: 108 VMQKAQEIYWNLYNVDIESKIGL 130
           VM+ AQEIYW LYNVDIESKI L
Sbjct: 253 VMKNAQEIYWKLYNVDIESKITL 255

[Close]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL
Match: A0A6A1WW76 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G013827 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 8  NNFWYHTLLKGTIRDTLASYGSVPASGPPLSFDQRVLKPTCPSCL 53
          + +WYHTLLKGT+RDTLASYGSVP SGPPLSFDQRVL+PTCP  L
Sbjct: 11 DRWWYHTLLKGTVRDTLASYGSVPESGPPLSFDQRVLEPTCPPFL 55

[Close]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL
Match: A0A6V7NT87 (DNA polymerase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS5003 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 45  KPTCPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILL 104
           K  CP    KGSIPY+ + L  LT++         +K+Y+           +YMKQDILL
Sbjct: 212 KNLCPGLGEKGSIPYDEVRLSNLTSN---------QKVYL-----------DYMKQDILL 271

Query: 105 LGGVMQKAQEIYWNLYNVDIESKIGL 130
           LGGVMQKAQEIYW LY VDIESKI L
Sbjct: 272 LGGVMQKAQEIYWKLYKVDIESKITL 277

[Close]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL
Match: B9T901 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2104750 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.5e-10
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 8  NNFWYHTLLKGTIRDTLASYGSVPASG-PPLSFDQRVLKPT-----CPSCLKGS 56
          + +WYHTLLKGT+RDTLASYGS P SG PP SFDQRVL+PT      P  LKGS
Sbjct: 11 DRWWYHTLLKGTVRDTLASYGSAPESGPPPFSFDQRVLEPTFPALDAPPTLKGS 64

[Close]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL
Match: A0A2Z2CAN2 (DNA polymerase OS=Cocos nucifera OX=13894 GN=rpo PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 45  KPTCPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILL 104
           K  CP    KGSIPYE + L  L + K  LL                    +YMKQDILL
Sbjct: 190 KNLCPELGSKGSIPYEDVKLSNLVSMKTRLL--------------------DYMKQDILL 249

Query: 105 LGGVMQKAQEIYWNLYNVDIESKIGL 130
           LGGVM+KAQ++YWN Y VDIESKI L
Sbjct: 250 LGGVMRKAQDLYWNAYKVDIESKITL 255

[Close]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL
Match: A0A2I0VCD2 (DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028098 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 45  KPTCPSC-LKGSIPYEIINLDYLTTDKDYLLNEKKEKIYINCKEKRHRELCEYMKQDILL 104
           K  CP    KGSIPY+ + L  L + K                    + L +YMKQDILL
Sbjct: 301 KNLCPDLGQKGSIPYDEVKLSNLVSMK--------------------KSLLDYMKQDILL 360

Query: 105 LGGVMQKAQEIYWNLYNVDIESKIGL 130
           LGG+MQKAQEI W LYNVDIESKI L
Sbjct: 361 LGGIMQKAQEISWKLYNVDIESKITL 366

The following BLAST results are available for this feature:

BLAST of Bhi11G001145 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001145 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001145 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1227947.1	6.5e-13	82.22	hypothetical protein CJ030_MR1G013827 [Morella rubra]	[more]
CAD1821792.1	3.0e-10	52.33	unnamed protein product [Ananas comosus var. bracteatus]	[more]
EEF27662.1	1.1e-09	68.52	conserved hypothetical protein [Ricinus communis]	[more]
KAG0450457.1	1.9e-09	53.01	hypothetical protein HPP92_026900 [Vanilla planifolia]	[more]
KAG0450557.1	1.9e-09	53.01	hypothetical protein HPP92_026679 [Vanilla planifolia]	[more]

BLAST of Bhi11G001145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WW76	3.1e-13	82.22	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR1G013827 PE=4 SV=1	[more]
A0A6V7NT87	1.5e-10	52.33	DNA polymerase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS5003 PE=3...	[more]
B9T901	5.5e-10	68.52	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2104750 PE=4 SV=1	[more]
A0A2Z2CAN2	2.1e-09	50.00	DNA polymerase OS=Cocos nucifera OX=13894 GN=rpo PE=3 SV=1	[more]
A0A2I0VCD2	2.1e-09	50.00	DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028098 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 48..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001145	Bhi11M001145	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity