Bhi11G001080 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001080
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Basic helix-loop-helix protein
Location	chr11: 37522040 .. 37524103 (+)
RNA-Seq Expression	Bhi11G001080
Synteny	Bhi11G001080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTCTCAACCACCTAGCTAGCTAGCTTGAATTCTCATTCCCCAAAAAGTTTTGTAGACATATATATTATACATATATATATACATGATTTCTAAGGGCACACATGTTTGTATGAGCTGGATTGAAGAAAAATGGAACAAAACTCCAAAATTGTCATTAAAAATAATGTTCATTGAATTTGGAATAAGCATGGGGAAGAAGGGAATCATCCAGCTTGCTTTGATGACACATGGTGGCTTTTAAAGGGTTGGAATTGGCTATATATATAAACAATCATGTGGTTGCATGAGCCCTAACATGAAAAAAGCAAATATGGCTGCTTAATTAGTTTACACACTTCAAATTTTTGAACCAACCCTTCAAAACTAAAATACTTCCTTTTTCCCTTTTTTCATGTGTTGACAACATTATATGCTGCATGTTTTGTGGTCCCTTTGCCCTAAATTTTATGCATTATTCTCACAATCTCAAAGCATAAGCTTCTTGAGCTCCATTTTCACCATATAAAATCCCCATATTATGTTGTTTTGAATCATCGTGAAGATCTGAAGAGATCCTAGCTAGTTTAATTTTCTTGAGAGCTAGGCATGGAAGTTTGGGGAAAAGATATGCTCCGAAGTCAAGTTTCCGACAGGCGAATCGTGAAACATGTCAAGAAGAAACTAGAGACGGCGTCAAGGACGTCAAGGTTGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAAGAAGATGATTCCAAGGAGTGAGTCTATGGAGTTGAATGGGCTTTTTCGAGAGACAGCAGATTATATTGTGTGGTTGCAAATGAAGGTGAGAATGATGCAAGCTTTGGTTCATGTATTGAAGGGCTCTGATGAGTGATGAGTGATTGATCAATCCATCCTATATGTGTACATATGTTCATGCATTTTCTTCATTTAATCTCTTCCTAATTATTAAGTTTTTATTCTTTGTGTTATTTCTTGGTTGTGGATTGTAACAGAAAATCCTTTCATTTGAACATGTTGAGATCAAAGGGGAGAATTTGTTCCACATACATGTTTTTGTTTAATAGTAATTAGTTTGATACATCATTTATAGAGCCAAACCATATTTCCCTCTAGCTATTAACTCTCTAATGGTTGTATGGTCTAATAATAAGATAGGGTAAAAAAATTCAATTTATACCTTACTAAAAAAAATAATTTAAGAATCTAAACTAATAGTTATATCAATTGAAACTTCACTATAATAATTTTGACTTTACACTTGAGTCGACGTTTTATAAACGATGATAGATGAATTTTACGATAATGATTTTGAAATAGTGTACATCTTTTCACAGAGATTTTTGTAGTTTTACTTAAATTTCATATATGATGAAGTATGAAATTGTCACAGAAGAGTAAGCTATCATGGCAATTCTAAATTGCCATAAAAAAAATTAAAAAGAAGTGTGCAAAAAAGGAGATTAAAAATATATGCTTTGATGATGACGGTTACAAATTGTCATCAAAAGATAACGCTATTTCTAATCTGGCAGGGGTGGTGTGAATCTAGGTTGGGGGTCAAACAGAGATTGTAGATCTAAACGAGTGGGAGGTCACCGAATTGGTCGCAAATCAGAGCTGAAACTTTCTTTTAACAGAGGAGATGGGTTTTAGGGTTTAGATTGGAGAGACTCAAGGTTTTGTTTTCGTGATATTTCTCAAATTAAAAGCTATCACTGATAGTTGCTAATAGTGATAGTAACTGATAGCACATTTCTCAAATTGAAAGCTATCATTGATAGCAACTTTCAATGATAATAACTGATAGCACATTTCTTAAATTGAAAGTTATCACTGATGGTAGCTATCCGTGATATCCCTTATAGCCACTATCAGTGATATTCATGATAGCAGCATCACTAATAGTAGTGATAACAACTGATATTATATTTCTCAAATTGAAAGTTATTACTGATAGCAGTTATAAGTGATATACACAGATAGCAGCTAACAATGATAGTAACTAATAGCACCTATCAGTGATAGCTTTCAATTTGAGAAAATCGAGAAGAAGAACATGTGGGTTAG

mRNA sequence

CTAATTCTCAACCACCTAGCTAGCTAGCTTGAATTCTCATTCCCCAAAAAGTTTTGTAGACATATATATTATACATATATATATACATGATTTCTAAGGGCACACATGTTTGTATGAGCTGGATTGAAGAAAAATGGAACAAAACTCCAAAATTGTCATTAAAAATAATGTTCATTGAATTTGGAATAAGCATGGGGAAGAAGGGAATCATCCAGCTTGCTTTGATGACACATGGTGGCTTTTAAAGGGTTGGAATTGGCTATATATATAAACAATCATGTGGTTGCATGAGCCCTAACATGAAAAAAGCAAATATGGCTGCTTAATTAGTTTACACACTTCAAATTTTTGAACCAACCCTTCAAAACTAAAATACTTCCTTTTTCCCTTTTTTCATGTGTTGACAACATTATATGCTGCATGTTTTGTGGTCCCTTTGCCCTAAATTTTATGCATTATTCTCACAATCTCAAAGCATAAGCTTCTTGAGCTCCATTTTCACCATATAAAATCCCCATATTATGTTGTTTTGAATCATCGTGAAGATCTGAAGAGATCCTAGCTAGTTTAATTTTCTTGAGAGCTAGGCATGGAAGTTTGGGGAAAAGATATGCTCCGAAGTCAAGTTTCCGACAGGCGAATCGTGAAACATGTCAAGAAGAAACTAGAGACGGCGTCAAGGACGTCAAGGTTGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAAGAAGATGATTCCAAGGAGTGAGTCTATGGAGTTGAATGGGCTTTTTCGAGAGACAGCAGATTATATTGTGTGGTTGCAAATGAAGGGGTGGTGTGAATCTAGGTTGGGGGTCAAACAGAGATTGTAGATCTAAACGAGTGGGAGGTCACCGAATTGGTCGCAAATCAGAGCTGAAACTTTCTTTTAACAGAGGAGATGGGTTTTAGGGTTTAGATTGGAGAGACTCAAGGTTTTGTTTTCGTGATATTTCTCAAATTAAAAGCTATCACTGATAGTTGCTAATAGTGATAGTAACTGATAGCACATTTCTCAAATTGAAAGCTATCATTGATAGCAACTTTCAATGATAATAACTGATAGCACATTTCTTAAATTGAAAGTTATCACTGATGGTAGCTATCCGTGATATCCCTTATAGCCACTATCAGTGATATTCATGATAGCAGCATCACTAATAGTAGTGATAACAACTGATATTATATTTCTCAAATTGAAAGTTATTACTGATAGCAGTTATAAGTGATATACACAGATAGCAGCTAACAATGATAGTAACTAATAGCACCTATCAGTGATAGCTTTCAATTTGAGAAAATCGAGAAGAAGAACATGTGGGTTAG

Coding sequence (CDS)

ATGGAAGTTTGGGGAAAAGATATGCTCCGAAGTCAAGTTTCCGACAGGCGAATCGTGAAACATGTCAAGAAGAAACTAGAGACGGCGTCAAGGACGTCAAGGTTGGAGAAGAGGATTTGCTTGAAGAGGATTAGGAGGCTGAAGAAGATGATTCCAAGGAGTGAGTCTATGGAGTTGAATGGGCTTTTTCGAGAGACAGCAGATTATATTGTGTGGTTGCAAATGAAGGGGTGGTGTGAATCTAGGTTGGGGGTCAAACAGAGATTGTAG

Protein sequence

MEVWGKDMLRSQVSDRRIVKHVKKKLETASRTSRLEKRICLKRIRRLKKMIPRSESMELNGLFRETADYIVWLQMKGWCESRLGVKQRL

Homology

[Close]

BLAST of Bhi11G001080 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 8  MLRSQVSDRRIVKHVKKKLETASRTSRLEKRICLKRIRRLKKMIPRSESME-LNGLFRET 67
          ++R Q + R +VK +  +   +   SR   R   +R++ LK+++P +++ E L+GLFR+T
Sbjct: 16 LMRRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQT 75

Query: 68 ADYIVWLQMK 77
          ADYI+ L+MK
Sbjct: 76 ADYILALEMK 85

[Close]

BLAST of Bhi11G001080 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 8  MLRSQVSDRRIVKHVKKKLETASRTSRLEKRICLKRIRRLKKMIPRSESME-LNGLFRET 67
          ++R Q + R +VK +  +   +   SR   R   +R++ LK+++P +++ E L+GLFR+T
Sbjct: 16 LMRRQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQT 75

Query: 68 ADYIVWLQMK 77
          ADYI+ L+MK
Sbjct: 76 ADYILALEMK 85

[Close]

BLAST of Bhi11G001080 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-18
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MEVWGKDMLRSQVSDRRIVKHV-KKKLETASRTSR-LEKRICLKRIRRLKKMIPRSESME 60
          ME+  KD     VSDRRI K V KKK+E  SR+SR  EKRICLKRIRRLKKM+P+SESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFRETADYIVWLQMK 77
          LNGLFRETADYIVWLQMK
Sbjct: 61 LNGLFRETADYIVWLQMK 74

[Close]

BLAST of Bhi11G001080 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MEVWGKDMLRSQVSDRRIVKHV-KKKLETASRTSR-LEKRICLKRIRRLKKMIPRSESME 60
          ME+  KD     VSDRRI K V KKK+E  SR SR  EKRICLKRIR+L+KMIP+SESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFRETADYIVWLQMK 77
          LNGLFRETADYIVWLQMK
Sbjct: 61 LNGLFRETADYIVWLQMK 74

[Close]

BLAST of Bhi11G001080 vs. NCBI nr
Match: KDP28282.1 (hypothetical protein JCGZ_14053 [Jatropha curcas])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 10  RSQVSDRRIVKHVKKKLETASRTSRLEKRICLKRIRRLKKMIPRSESMELNGLFRETADY 69
           R++   R ++K+   +LE+  RT+    +   +R+R LKK++PRSESM L GLFRETADY
Sbjct: 44  RNKRCRRALMKYRGSRLESCRRTTAFGIQ---RRVRTLKKLVPRSESMGLEGLFRETADY 103

Query: 70  IVWLQMK 77
           I+ LQM+
Sbjct: 104 ILTLQMR 107

[Close]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MEVWGKDMLRSQVSDRRIVKHV-KKKLETASRTSR-LEKRICLKRIRRLKKMIPRSESME 60
          ME+  KD     VSDRRI K V KKK+E  SR+SR  EKRICLKRIRRLKKM+P+SESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESME 60

Query: 61 LNGLFRETADYIVWLQMK 77
          LNGLFRETADYIVWLQMK
Sbjct: 61 LNGLFRETADYIVWLQMK 74

[Close]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MEVWGKDMLRSQVSDRRIVKHV-KKKLETASRTSR-LEKRICLKRIRRLKKMIPRSESME 60
          ME+  KD     VSDRRI K V KKK+E  SR SR  EKRICLKRIR+L+KMIP+SESME
Sbjct: 1  MEILAKD----TVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESME 60

Query: 61 LNGLFRETADYIVWLQMK 77
          LNGLFRETADYIVWLQMK
Sbjct: 61 LNGLFRETADYIVWLQMK 74

[Close]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL
Match: A0A067JWP1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14053 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 10  RSQVSDRRIVKHVKKKLETASRTSRLEKRICLKRIRRLKKMIPRSESMELNGLFRETADY 69
           R++   R ++K+   +LE+  RT+    +   +R+R LKK++PRSESM L GLFRETADY
Sbjct: 44  RNKRCRRALMKYRGSRLESCRRTTAFGIQ---RRVRTLKKLVPRSESMGLEGLFRETADY 103

Query: 70  IVWLQMK 77
           I+ LQM+
Sbjct: 104 ILTLQMR 107

[Close]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL
Match: B9GSV5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 42  KRIRRLKKMIPRSESMELNGLFRETADYIVWLQMK 77
           +R+R LKK+IP SESM L+GLFRETADYI+ LQM+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMR 120

[Close]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL
Match: A0A3G0Z5L8 (Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=bHLH02 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 42  KRIRRLKKMIPRSESMELNGLFRETADYIVWLQMK 77
           +R+R LKK+IP SESM L+GLFRETADYI+ LQM+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMR 120

The following BLAST results are available for this feature:

BLAST of Bhi11G001080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	2.1e-05	37.14	sequence-specific DNA binding transcription factors;transcription regulators	[more]

BLAST of Bhi11G001080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	2.9e-04	37.14	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of Bhi11G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	3.4e-18	75.64	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	2.2e-17	74.36	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KDP28282.1	1.6e-04	47.76	hypothetical protein JCGZ_14053 [Jatropha curcas]	[more]

BLAST of Bhi11G001080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	1.7e-18	75.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	1.1e-17	74.36	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A067JWP1	8.0e-05	47.76	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14053 PE=4 SV=1	[more]
B9GSV5	6.7e-04	71.43	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 ...	[more]
A0A3G0Z5L8	6.7e-04	71.43	Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=b...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..89
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 13..76
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 13..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001080	Bhi11M001080	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated