Bhi11G000979 (gene) Wax gourd (B227) v1

Overview
NameBhi11G000979
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionHistidine--tRNA ligase
Locationchr11: 34174521 .. 34175147 (+)
RNA-Seq ExpressionBhi11G000979
SyntenyBhi11G000979
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCTCCCTCTTCTTTTGCATACATAGAGAATATGAAAGGTCAAAATGTTTGTAGTGATGAAAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGCTCAAGCTTATCAGGATGCAAAGGTTGCCCTGGCGAAAAATCGAGGCGTTGGAACGAGACGAACCCAAAAGGAAGATCCTATTAGAACCATAATGTTCTTGGGATCGTGGAGTCACACTTGAACTAATTACAGTTTGTTTAACAAACTATTTCTTAAAATTGTTCTTAAGAACTGTGATTAAATGGGTTTGTGAAAGGTTAGTTTATTATTTTGTATATTGAAGTTACTAATCACAAACTGTGATTTTGAAAGGTTCTCGTAAGACTCTCAACAAACAAGAAAGAAAGTTATCAAAATATGTTTTCTTTAATTCTTGTTGTAAAAAGTTGTTATAAAAGTAATTTTTAAATGTCTTTAATAAACGAGAAATAAAATATTAAGAATATATGTATTTTCAATCCAACTTATAGGTTGTATCCTTGTATCAAAATCAATGTATTATATCTCTCTCACTCCCACTCTCACCTTTTATTGCTATTTAGTTTAATCTACCTCATACCAATAATATAATTCTTTGAACTTCAAA

mRNA sequence

ATCTCTCCCTCTTCTTTTGCATACATAGAGAATATGAAAGGTCAAAATGTTTGTAGTGATGAAAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGCTCAAGCTTATCAGGATGCAAAGGTTGCCCTGGCGAAAAATCGAGGCGTTGGAACGAGACGAACCCAAAAGGAAGATCCTATTAGAACCATAATGTTCTTGGGATCGTGGAGTCACACTTGAACTAATTACAGTTTGTTTAACAAACTATTTCTTAAAATTGTTCTTAAGAACTGTGATTAAATGGGTTTGTGAAAGGTTAGTTTATTATTTTGTATATTGAAGTTACTAATCACAAACTGTGATTTTGAAAGGTTCTCGTAAGACTCTCAACAAACAAGAAAGAAAGTTATCAAAATATGTTTTCTTTAATTCTTGTTGTAAAAAGTTGTTATAAAAGTAATTTTTAAATGTCTTTAATAAACGAGAAATAAAATATTAAGAATATATGTATTTTCAATCCAACTTATAGGTTGTATCCTTGTATCAAAATCAATGTATTATATCTCTCTCACTCCCACTCTCACCTTTTATTGCTATTTAGTTTAATCTACCTCATACCAATAATATAATTCTTTGAACTTCAAA

Coding sequence (CDS)

ATGAAAGGTCAAAATGTTTGTAGTGATGAAAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGCTCAAGCTTATCAGGATGCAAAGGTTGCCCTGGCGAAAAATCGAGGCGTTGGAACGAGACGAACCCAAAAGGAAGATCCTATTAGAACCATAATGTTCTTGGGATCGTGGAGTCACACTTGA

Protein sequence

MKGQNVCSDESSESSRTIGEKLAQAYQDAKVALAKNRGVGTRRTQKEDPIRTIMFLGSWSHT
Homology
BLAST of Bhi11G000979 vs. NCBI nr
Match: KGN52786.1 (hypothetical protein Csa_015138 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MKGQNVCSDESSESSRTIGEKLAQAYQDAKVALAKNRGVGTRRTQKEDPIRTIMFLGSWS 60
          MK Q+  S +S  SSRT+GEKLAQAY+D KVAL KN+GVGTRR Q+EDPIRTIMFLGSWS
Sbjct: 1  MKVQHEKSSDS--SSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 61 HT 63
          HT
Sbjct: 61 HT 60

BLAST of Bhi11G000979 vs. NCBI nr
Match: KAA0044357.1 (hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486.1 hypothetical protein E5676_scaffold655G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MKGQNVCSDESSESSRTIGEKLAQAYQDAKVALA--KNRGVGTRRTQKEDPIRTIMFLGS 60
          MK Q+  S +S  SSRTIGEKLAQAY+D KVALA  KNRGVG RR QKEDPIRTIMFLG 
Sbjct: 1  MKVQHEKSSDS--SSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG- 60

Query: 61 WSHT 63
          WS T
Sbjct: 61 WSAT 61

BLAST of Bhi11G000979 vs. NCBI nr
Match: ESR57518.1 (hypothetical protein CICLE_v10023157mg [Citrus clementina] >KDO87308.1 hypothetical protein CISIN_1g034981mg [Citrus sinensis] >GAY40908.1 hypothetical protein CUMW_055410 [Citrus unshiu])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MKGQNVCSDES--SESSRTIGEKLAQAYQDAKVALAK-----------NRGVGTRRT--Q 60
          MK   V  + S   +S RTIGEK  QAY+ A VA A            NRG+  R+   +
Sbjct: 1  MKHHQVAGESSLTHDSKRTIGEKFRQAYEAAMVAAAGDGVQRGCNVPINRGIERRKPSYR 60

Query: 61 KEDPIRTIMFLGSWSHT 63
           EDPIRTIMFLGSWSHT
Sbjct: 61 AEDPIRTIMFLGSWSHT 77

BLAST of Bhi11G000979 vs. NCBI nr
Match: KAE8009525.1 (hypothetical protein FH972_005957 [Carpinus fangiana])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1  MKGQNVCSDES--SESSRTIGEKLAQAYQDAKVALAKNR-----------GVGTRR--TQ 60
          MK Q+   D S   +S RT+GEKL +AY+ A++A+A NR            +  RR    
Sbjct: 1  MKPQHTSGDGSLTQDSKRTVGEKLRRAYEVARIAVAGNRVWEGCSLPISKEIERRRWSYH 60

Query: 61 KEDPIRTIMFLGSWSHT 63
           EDPIRT+MFLGSWSHT
Sbjct: 61 AEDPIRTMMFLGSWSHT 77

BLAST of Bhi11G000979 vs. NCBI nr
Match: TXG68591.1 (hypothetical protein EZV62_003526 [Acer yangbiense])

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 1   MKGQNVCSDESS---ESSRTIGEKLAQAYQDAKVALAKNRGVGTRRTQ------------ 60
           MK QNV + + S   +S RTIGEKL QAY  A VA+A +R   + R++            
Sbjct: 26  MKHQNVSASDGSLAHDSKRTIGEKLRQAYDAAVVAVAGDRVQQSGRSRLAPRGIERQKSG 85

Query: 61  --KEDPIRTIMFLGSWSHT 63
              +DPIRT+MFLGSW+HT
Sbjct: 86  YCAKDPIRTMMFLGSWNHT 104

BLAST of Bhi11G000979 vs. ExPASy TrEMBL
Match: A0A0A0KY58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MKGQNVCSDESSESSRTIGEKLAQAYQDAKVALAKNRGVGTRRTQKEDPIRTIMFLGSWS 60
          MK Q+  S +S  SSRT+GEKLAQAY+D KVAL KN+GVGTRR Q+EDPIRTIMFLGSWS
Sbjct: 1  MKVQHEKSSDS--SSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 61 HT 63
          HT
Sbjct: 61 HT 60

BLAST of Bhi11G000979 vs. ExPASy TrEMBL
Match: A0A5A7TR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00850 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-12
Identity = 48/64 (75.00%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MKGQNVCSDESSESSRTIGEKLAQAYQDAKVALA--KNRGVGTRRTQKEDPIRTIMFLGS 60
          MK Q+  S +S  SSRTIGEKLAQAY+D KVALA  KNRGVG RR QKEDPIRTIMFLG 
Sbjct: 1  MKVQHEKSSDS--SSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG- 60

Query: 61 WSHT 63
          WS T
Sbjct: 61 WSAT 61

BLAST of Bhi11G000979 vs. ExPASy TrEMBL
Match: A0A2N9EC73 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS205 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 0

Query: 1  MKGQNVCSDES--SESSRTIGEKLAQAYQDAKVALAKNR------------GVGTRR--T 60
          MK Q +  D S   ES RT+GEK  QAY+ A +A+AKNR             +  R+   
Sbjct: 1  MKPQQLSGDSSLTQESKRTVGEKFRQAYEVAIIAIAKNRVWEACTNLPISKEIERRKWSH 60

Query: 61 QKEDPIRTIMFLGSWSHT 63
            EDPIRT+MFLGSWSHT
Sbjct: 61 HAEDPIRTLMFLGSWSHT 78

BLAST of Bhi11G000979 vs. ExPASy TrEMBL
Match: A0A067H5M1 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034981mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MKGQNVCSDES--SESSRTIGEKLAQAYQDAKVALAK-----------NRGVGTRRT--Q 60
          MK   V  + S   +S RTIGEK  QAY+ A VA A            NRG+  R+   +
Sbjct: 1  MKHHQVAGESSLTHDSKRTIGEKFRQAYEAAMVAAAGDGVQRGCNVPINRGIERRKPSYR 60

Query: 61 KEDPIRTIMFLGSWSHT 63
           EDPIRTIMFLGSWSHT
Sbjct: 61 AEDPIRTIMFLGSWSHT 77

BLAST of Bhi11G000979 vs. ExPASy TrEMBL
Match: V4TB14 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023157mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 38/77 (49.35%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MKGQNVCSDES--SESSRTIGEKLAQAYQDAKVALAK-----------NRGVGTRRT--Q 60
          MK   V  + S   +S RTIGEK  QAY+ A VA A            NRG+  R+   +
Sbjct: 1  MKHHQVAGESSLTHDSKRTIGEKFRQAYEAAMVAAAGDGVQRGCNVPINRGIERRKPSYR 60

Query: 61 KEDPIRTIMFLGSWSHT 63
           EDPIRTIMFLGSWSHT
Sbjct: 61 AEDPIRTIMFLGSWSHT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52786.11.9e-1575.81hypothetical protein Csa_015138 [Cucumis sativus][more]
KAA0044357.11.6e-1175.00hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486... [more]
ESR57518.11.8e-0549.35hypothetical protein CICLE_v10023157mg [Citrus clementina] >KDO87308.1 hypotheti... [more]
KAE8009525.15.1e-0546.75hypothetical protein FH972_005957 [Carpinus fangiana][more]
TXG68591.16.7e-0545.57hypothetical protein EZV62_003526 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
A0A0A0KY589.1e-1675.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1[more]
A0A5A7TR668.0e-1275.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9EC736.5e-0647.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS205 PE=4 SV=1[more]
A0A067H5M18.5e-0649.35Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034981mg PE=4 SV=1[more]
V4TB148.5e-0649.35Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023157mg PE=4 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000979Bhi11M000979mRNA