Bhi11G000619 (gene) Wax gourd (B227) v1

Overview
NameBhi11G000619
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionGlutamate receptor 3.6
Locationchr11: 19891129 .. 19891512 (+)
RNA-Seq ExpressionBhi11G000619
SyntenyBhi11G000619
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTAGTGGCAATTCCTTAACTCAATCACAAAAAGAAGAAATCCCAACGTACAACAATGATGTCAACACTAATGCCAATACTGTTGGATTGTCCCAACAATTTCAAATTGACAGGATTTTAGCATTTGGAAATCTTCTCAACACCATGCTCACCTTAAAGTTGAATGAGACCAACTTCTTGTTATGGAAGTCGAGGGTACTTGCTGAGGCCAATGCCTATTTTCTTGGCACCAAAGCTCCTCCTCCAGAGTTTGTAGCAGTCACAAAGAATGCCAAGACCACCTATGCAATCAATCCAGCCTTCGAAGAATGGACAACCGCTGACCAAGCTCTCTTAGGATGGTTTTTTTGGATCCATGGAGGCCATTGTGGCTTGTGA

mRNA sequence

ATGGACGGTAGTGGCAATTCCTTAACTCAATCACAAAAAGAAGAAATCCCAACGTACAACAATGATGTCAACACTAATGCCAATACTGTTGGATTGTCCCAACAATTTCAAATTGACAGGATTTTAGCATTTGGAAATCTTCTCAACACCATGCTCACCTTAAAGTTGAATGAGACCAACTTCTTGTTATGGAAGTCGAGGGTACTTGCTGAGGCCAATGCCTATTTTCTTGGCACCAAAGCTCCTCCTCCAGAGTTTGTAGCAGTCACAAAGAATGCCAAGACCACCTATGCAATCAATCCAGCCTTCGAAGAATGGACAACCGCTGACCAAGCTCTCTTAGGATGGTTTTTTTGGATCCATGGAGGCCATTGTGGCTTGTGA

Coding sequence (CDS)

ATGGACGGTAGTGGCAATTCCTTAACTCAATCACAAAAAGAAGAAATCCCAACGTACAACAATGATGTCAACACTAATGCCAATACTGTTGGATTGTCCCAACAATTTCAAATTGACAGGATTTTAGCATTTGGAAATCTTCTCAACACCATGCTCACCTTAAAGTTGAATGAGACCAACTTCTTGTTATGGAAGTCGAGGGTACTTGCTGAGGCCAATGCCTATTTTCTTGGCACCAAAGCTCCTCCTCCAGAGTTTGTAGCAGTCACAAAGAATGCCAAGACCACCTATGCAATCAATCCAGCCTTCGAAGAATGGACAACCGCTGACCAAGCTCTCTTAGGATGGTTTTTTTGGATCCATGGAGGCCATTGTGGCTTGTGA

Protein sequence

MDGSGNSLTQSQKEEIPTYNNDVNTNANTVGLSQQFQIDRILAFGNLLNTMLTLKLNETNFLLWKSRVLAEANAYFLGTKAPPPEFVAVTKNAKTTYAINPAFEEWTTADQALLGWFFWIHGGHCGL
Homology
BLAST of Bhi11G000619 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-08
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 43  AFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVA--VTKNAKT 102
           +FG+ L T+LT+KL++ N+ LW+  VLA     + + Y LGT A PP+F+    T+    
Sbjct: 33  SFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSD 92

Query: 103 TYAINPAFEEWTTADQALLGWFF 119
              +NP + EW   DQALLGW F
Sbjct: 93  HLQVNPEYVEWQAVDQALLGWLF 115

BLAST of Bhi11G000619 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-08
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 43  AFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVA--VTKNAKT 102
           +FG+ L T+LT+KL++ N+ LW+  VLA     + + Y LGT A PP+F+    T+    
Sbjct: 33  SFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSD 92

Query: 103 TYAINPAFEEWTTADQALLGWFF 119
              +NP + EW   DQALLGW F
Sbjct: 93  HLQVNPEYVEWQAVDQALLGWLF 115

BLAST of Bhi11G000619 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 42  LAFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVAVTKN-AKT 101
           ++FG+ L+T LT+KL++ N+ LWK  VLA     + + Y L TK  P ++   T +    
Sbjct: 25  ISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTTTSDTGML 84

Query: 102 TYAINPAFEEWTTADQALLGWFF 119
              +NPA+EEW+  DQA  GW F
Sbjct: 85  EPTLNPAYEEWSAVDQAFCGWLF 107

BLAST of Bhi11G000619 vs. NCBI nr
Match: MCI43696.1 (glutamate receptor 3.6 [Trifolium medium])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 46  NLLNTMLTLKLNETNFLLWKSRVL-----AEANAYFLGTKAPPPEFVAVTKNAKTTYAIN 105
           N L T +++KL+  N+ LWKS VL      + ++Y LGTK  P +FV       TT  IN
Sbjct: 14  NELPTTVSVKLDRDNYPLWKSLVLPLIRGCKLDSYMLGTKECPDQFVTTN---DTTKKIN 73

Query: 106 PAFEEWTTADQALLGW 117
           P +EEW   DQALLGW
Sbjct: 74  PEYEEWIARDQALLGW 86

BLAST of Bhi11G000619 vs. NCBI nr
Match: GAU47324.1 (hypothetical protein TSUD_291460 [Trifolium subterraneum])

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-06
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 46  NLLNTMLTLKLNETNFLLWKSRVL-----AEANAYFLGTKAPPPEFVAVTKNAKTTYAIN 105
           N L T +++KL+  N+ LWKS VL      + ++Y LGTK  P +F  VT N KT   IN
Sbjct: 11  NELPTTVSVKLDRDNYPLWKSLVLPLIRGCKLDSYILGTKECPEQF--VTTNDKTK-KIN 70

Query: 106 PAFEEWTTADQALLGW 117
           P +EEW   DQALLGW
Sbjct: 71  PEYEEWIAHDQALLGW 83

BLAST of Bhi11G000619 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 43  AFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVA--VTKNAKT 102
           +FG+ L T+LT+KL++ N+ LW+  VLA     + + Y LGT A PP+F+    T+    
Sbjct: 33  SFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSD 92

Query: 103 TYAINPAFEEWTTADQALLGWFF 119
              +NP + EW   DQALLGW F
Sbjct: 93  HLQVNPEYVEWQAVDQALLGWLF 115

BLAST of Bhi11G000619 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 43  AFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVA--VTKNAKT 102
           +FG+ L T+LT+KL++ N+ LW+  VLA     + + Y LGT A PP+F+    T+    
Sbjct: 33  SFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSD 92

Query: 103 TYAINPAFEEWTTADQALLGWFF 119
              +NP + EW   DQALLGW F
Sbjct: 93  HLQVNPEYVEWQAVDQALLGWLF 115

BLAST of Bhi11G000619 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 42  LAFGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVAVTKN-AKT 101
           ++FG+ L+T LT+KL++ N+ LWK  VLA     + + Y L TK  P ++   T +    
Sbjct: 25  ISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTTTSDTGML 84

Query: 102 TYAINPAFEEWTTADQALLGWFF 119
              +NPA+EEW+  DQA  GW F
Sbjct: 85  EPTLNPAYEEWSAVDQAFCGWLF 107

BLAST of Bhi11G000619 vs. ExPASy TrEMBL
Match: A0A803Q6A2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.1e-07
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 44  FGNLLNTMLTLKLNETNFLLWKSRVLA-----EANAYFLGTKAPPPEFVAVTKNA----K 103
           FG+ LN   TLKL+  NF LW++ V+A       + Y  GT   P E+ +VT N      
Sbjct: 40  FGSTLNQPFTLKLDINNFTLWRTMVVAIVRGHRLDGYLKGTLPRPQEYNSVTTNVDGSES 99

Query: 104 TTYAINPAFEEWTTADQALLGW 117
            T  INPAFE+W   DQ LLGW
Sbjct: 100 VTDEINPAFEQWIVNDQLLLGW 121

BLAST of Bhi11G000619 vs. ExPASy TrEMBL
Match: A0A392S731 (Glutamate receptor 3.6 (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 46  NLLNTMLTLKLNETNFLLWKSRVL-----AEANAYFLGTKAPPPEFVAVTKNAKTTYAIN 105
           N L T +++KL+  N+ LWKS VL      + ++Y LGTK  P +FV       TT  IN
Sbjct: 14  NELPTTVSVKLDRDNYPLWKSLVLPLIRGCKLDSYMLGTKECPDQFVTTN---DTTKKIN 73

Query: 106 PAFEEWTTADQALLGW 117
           P +EEW   DQALLGW
Sbjct: 74  PEYEEWIARDQALLGW 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022157748.16.0e-0842.17uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.16.0e-0842.17uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.13.9e-0739.76ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
MCI43696.13.3e-0646.05glutamate receptor 3.6 [Trifolium medium][more]
GAU47324.14.3e-0648.68hypothetical protein TSUD_291460 [Trifolium subterraneum][more]
Match NameE-valueIdentityDescription
A0A6J1DU772.9e-0842.17uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTZ72.9e-0842.17uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CPQ71.9e-0739.76ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A803Q6A27.1e-0743.90Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A392S7311.6e-0646.05Glutamate receptor 3.6 (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000619Bhi11M000619mRNA