Bhi11G000616 (gene) Wax gourd (B227) v1

Overview
NameBhi11G000616
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionsyntaxin-32
Locationchr11: 19675817 .. 19676030 (+)
RNA-Seq ExpressionBhi11G000616
SyntenyBhi11G000616
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGAAATGAAAATTATGTTGCTTGTAAATTTACAGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTTGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

mRNA sequence

ATGTGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

Coding sequence (CDS)

ATGTGGAAGCAAGTGGATGGGGATGGTCAACCGTTGTTGCAGCAGCAACAACAACAGAAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGA

Protein sequence

MWKQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQNQYLQPAGNSGF
Homology
BLAST of Bhi11G000616 vs. TAIR 10
Match: AT3G24350.1 (syntaxin of plants 32 )

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2   WKQVDGDGQPLL-----QQQQQQKQMVPLQDTYMQSRAEAL 38
           WK  +G+  PLL     QQQQQQ+QMVPLQDTYMQ RAEAL
Sbjct: 225 WKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEAL 265

BLAST of Bhi11G000616 vs. TAIR 10
Match: AT3G24350.2 (syntaxin of plants 32 )

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2   WKQVDGDGQPLL-----QQQQQQKQMVPLQDTYMQSRAEAL 38
           WK  +G+  PLL     QQQQQQ+QMVPLQDTYMQ RAEAL
Sbjct: 239 WKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEAL 279

BLAST of Bhi11G000616 vs. ExPASy Swiss-Prot
Match: Q9LK09 (Syntaxin-32 OS=Arabidopsis thaliana OX=3702 GN=SYP32 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-05
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2   WKQVDGDGQPLL-----QQQQQQKQMVPLQDTYMQSRAEAL 38
           WK  +G+  PLL     QQQQQQ+QMVPLQDTYMQ RAEAL
Sbjct: 225 WKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEAL 265

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_038896268.1 (LOW QUALITY PROTEIN: peroxidase 11-like [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-08
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDGDGQPLLQQ+QQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 176 KQVDGDGQPLLQQRQQQQQMVPLQDTYMQSRAEALQN 212

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_008445123.1 (PREDICTED: syntaxin-32 [Cucumis melo] >XP_011649786.1 syntaxin-32 [Cucumis sativus] >XP_031736375.1 syntaxin-32 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-08
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 258

BLAST of Bhi11G000616 vs. NCBI nr
Match: KAE8652185.1 (hypothetical protein Csa_021978 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-08
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 693 KQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 729

BLAST of Bhi11G000616 vs. NCBI nr
Match: XP_038885581.1 (syntaxin-32 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 6.8e-08
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDGD QPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGDAQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 258

BLAST of Bhi11G000616 vs. NCBI nr
Match: KAG6585430.1 (Molybdate transporter 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 679 KQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 715

BLAST of Bhi11G000616 vs. ExPASy TrEMBL
Match: A0A0A0LQ08 (t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379220 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 258

BLAST of Bhi11G000616 vs. ExPASy TrEMBL
Match: A0A1S3BCP1 (syntaxin-32 OS=Cucumis melo OX=3656 GN=LOC103488253 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 258

BLAST of Bhi11G000616 vs. ExPASy TrEMBL
Match: A0A6J1KQD6 (syntaxin-32-like OS=Cucurbita maxima OX=3661 GN=LOC111496263 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.6e-08
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQQQQQ+QMVPLQDTYMQSRAEALQN
Sbjct: 222 KQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQN 258

BLAST of Bhi11G000616 vs. ExPASy TrEMBL
Match: A0A2Z6NZ89 (t-SNARE coiled-coil homology domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_306640 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+ QPLLQQQQQQ+QMVPLQD+YMQSRAEALQN
Sbjct: 229 KQVDGESQPLLQQQQQQQQMVPLQDSYMQSRAEALQN 265

BLAST of Bhi11G000616 vs. ExPASy TrEMBL
Match: A0A5A7VD63 (Syntaxin-32-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002980 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 3   KQVDGDGQPLLQQQQQQKQMVPLQDTYMQSRAEALQN 40
           KQVDG+GQPLLQQQQQQ QMVPLQDTYMQSRAEALQN
Sbjct: 237 KQVDGEGQPLLQQQQQQ-QMVPLQDTYMQSRAEALQN 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G24350.11.1e-0668.29syntaxin of plants 32 [more]
AT3G24350.21.1e-0668.29syntaxin of plants 32 [more]
Match NameE-valueIdentityDescription
Q9LK091.5e-0568.29Syntaxin-32 OS=Arabidopsis thaliana OX=3702 GN=SYP32 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_038896268.14.0e-0894.59LOW QUALITY PROTEIN: peroxidase 11-like [Benincasa hispida][more]
XP_008445123.14.0e-0894.59PREDICTED: syntaxin-32 [Cucumis melo] >XP_011649786.1 syntaxin-32 [Cucumis sativ... [more]
KAE8652185.14.0e-0894.59hypothetical protein Csa_021978 [Cucumis sativus][more]
XP_038885581.16.8e-0894.59syntaxin-32 [Benincasa hispida][more]
KAG6585430.12.0e-0791.89Molybdate transporter 1, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
A0A0A0LQ081.9e-0894.59t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=365... [more]
A0A1S3BCP11.9e-0894.59syntaxin-32 OS=Cucumis melo OX=3656 GN=LOC103488253 PE=3 SV=1[more]
A0A6J1KQD69.6e-0891.89syntaxin-32-like OS=Cucurbita maxima OX=3661 GN=LOC111496263 PE=3 SV=1[more]
A0A2Z6NZ892.8e-0789.19t-SNARE coiled-coil homology domain-containing protein (Fragment) OS=Trifolium s... [more]
A0A5A7VD634.8e-0794.59Syntaxin-32-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G0029... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000616Bhi11M000616mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0048278 vesicle docking
biological_process GO:0006906 vesicle fusion
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031201 SNARE complex
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0000149 SNARE binding