Bhi11G000544 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000544
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Atp synthase subunit beta
Location	chr11: 16648710 .. 16648889 (-)
RNA-Seq Expression	Bhi11G000544
Synteny	Bhi11G000544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTGAAGCGCACGACCTATACCCGGCCTTCGGGGCAAGGTCGCTGCAAAACCTTGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCAAAGAGGGGAAAAGTTCCATGTGAACGACACTTGCACATGG

mRNA sequence

ATGGCGCTGAAGCGCACGACCTATACCCGGCCTTCGGGGCAAGGTCGCTGCAAAACCTTGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCAAAGAGGGGAAAAGTTCCATGTGAACGACACTTGCACATGG

Coding sequence (CDS)

ATGGCGCTGAAGCGCACGACCTATACCCGGCCTTCGGGGCAAGGTCGCTGCAAAACCTTGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCAAAGAGGGGAAAAGTTCCATGTGAACGACACTTGCACATGG

Protein sequence

MALKRTTYTRPSGQGRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW

Homology

[Close]

BLAST of Bhi11G000544 vs. NCBI nr
Match: KAG0488266.1 (hypothetical protein HPP92_007077 [Vanilla planifolia])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 49/70 (70.00%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1  MALKRTTYTRPSGQ----------GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGE 60
          M LKR T+T PS Q          GRCKT GVSP GA+VGADLGGSSKYSNENFEG+RGE
Sbjct: 1  MTLKRVTHTWPSVQCKAPTSRRCNGRCKTWGVSPRGASVGADLGGSSKYSNENFEGRRGE 60

[Close]

BLAST of Bhi11G000544 vs. NCBI nr
Match: XP_024571437.1 (atp synthase subunit beta [Plasmopara halstedii] >CEG35068.1 atp synthase subunit beta [Plasmopara halstedii])

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKTLGVSPGGAAVGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 138 GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 183

[Close]

BLAST of Bhi11G000544 vs. NCBI nr
Match: KAF7143390.1 (hypothetical protein RHSIM_Rhsim05G0123800 [Rhododendron simsii])

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 10 RPSGQGRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
          R    GRCKTLGVS GGAAVGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 38 RRGRSGRCKTLGVSLGGAAVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 88

[Close]

BLAST of Bhi11G000544 vs. NCBI nr
Match: OIW03238.1 (hypothetical protein TanjilG_29986 [Lupinus angustifolius])

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15 GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
          GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 43 GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 88

[Close]

BLAST of Bhi11G000544 vs. NCBI nr
Match: KAF1856505.1 (hypothetical protein Lal_00046801 [Lupinus albus])

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 174 GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 219

[Close]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL
Match: A0A0P1A454 (Atp synthase subunit beta OS=Plasmopara halstedii OX=4781 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKTLGVSPGGAAVGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 138 GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 183

[Close]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL
Match: A0A6A5LAN3 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046801 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 174 GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 219

[Close]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL
Match: A0A6A5L9C6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043479 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 95  GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 140

[Close]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL
Match: A0A6A5L1J3 (Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00046767 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15  GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
           GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 73  GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 118

[Close]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL
Match: A0A6A5L6U1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046784 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 15 GRCKTLGVSPGGAAVGADLGGSSKYSNENFEGQRGEKFHVNDTCTW 61
          GRCKT GVSPGGA VGADLGGSSKYSNENFEG+RGE+FHVN TCTW
Sbjct: 43 GRCKTWGVSPGGAVVGADLGGSSKYSNENFEGRRGERFHVNGTCTW 88

The following BLAST results are available for this feature:

BLAST of Bhi11G000544 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000544 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000544 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG0488266.1	1.3e-16	70.00	hypothetical protein HPP92_007077 [Vanilla planifolia]	[more]
XP_024571437.1	2.8e-16	93.48	atp synthase subunit beta [Plasmopara halstedii] >CEG35068.1 atp synthase subuni...	[more]
KAF7143390.1	3.1e-15	84.31	hypothetical protein RHSIM_Rhsim05G0123800 [Rhododendron simsii]	[more]
OIW03238.1	4.1e-15	89.13	hypothetical protein TanjilG_29986 [Lupinus angustifolius]	[more]
KAF1856505.1	4.1e-15	89.13	hypothetical protein Lal_00046801 [Lupinus albus]	[more]

BLAST of Bhi11G000544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0P1A454	1.4e-16	93.48	Atp synthase subunit beta OS=Plasmopara halstedii OX=4781 PE=4 SV=1	[more]
A0A6A5LAN3	2.0e-15	89.13	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046801 PE=4 SV=1	[more]
A0A6A5L9C6	2.0e-15	89.13	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043479 PE=4 SV=1	[more]
A0A6A5L1J3	2.0e-15	89.13	Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00046767 PE=4...	[more]
A0A6A5L6U1	2.0e-15	89.13	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046784 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000544	Bhi11M000544	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane