Bhi11G000379 (gene) Wax gourd (B227) v1

Overview
NameBhi11G000379
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionGag protease polyprotein
Locationchr11: 11525992 .. 11526179 (+)
RNA-Seq ExpressionBhi11G000379
SyntenyBhi11G000379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCAGGAAGTTCAACCCTTCAACATTTGATGGATCATCTGTGGATCCAATTATAGCAGAGAATTGGATAACAGAAATAGAAACTATTTTCCGCCATATGAACATCCCAGAAGAACAGAAAGTAAATTATGCCACCTTCATGTTAAGAGGCGATGCAAAGTTCTGGTGGGACTCCACACAAAGAACA

mRNA sequence

AATTCAGGAAGTTCAACCCTTCAACATTTGATGGATCATCTGTGGATCCAATTATAGCAGAGAATTGGATAACAGAAATAGAAACTATTTTCCGCCATATGAACATCCCAGAAGAACAGAAAGTAAATTATGCCACCTTCATGTTAAGAGGCGATGCAAAGTTCTGGTGGGACTCCACACAAAGAACA

Coding sequence (CDS)

AATTCAGGAAGTTCAACCCTTCAACATTTGATGGATCATCTGTGGATCCAATTATAGCAGAGAATTGGATAACAGAAATAGAAACTATTTTCCGCCATATGAACATCCCAGAAGAACAGAAAGTAAATTATGCCACCTTCATGTTAAGAGGCGATGCAAAGTTCTGGTGGGACTCCACACAAAGAACA

Protein sequence

FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQRT
Homology
BLAST of Bhi11G000379 vs. NCBI nr
Match: XP_038902446.1 (uncharacterized protein LOC120089092 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVN ATFMLR DAKFWWDSTQ
Sbjct: 70  FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNCATFMLRADAKFWWDSTQ 129

Query: 61  RT 63
           RT
Sbjct: 130 RT 131

BLAST of Bhi11G000379 vs. NCBI nr
Match: XP_038896490.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120084738 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRKFNPSTFDGSSVDPIIAENWITEI+TIFRHMNIP+EQKVN ATFMLRGDAKFWW+STQ
Sbjct: 70  FRKFNPSTFDGSSVDPIIAENWITEIKTIFRHMNIPKEQKVNCATFMLRGDAKFWWESTQ 129

Query: 61  RT 63
           RT
Sbjct: 130 RT 131

BLAST of Bhi11G000379 vs. NCBI nr
Match: XP_038902429.1 (uncharacterized protein LOC120089074 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FR FNPSTFDGSSVDPII +NW TEIETIFRHMNIPEEQKVNYATFMLRGDAKFWW+STQ
Sbjct: 70  FRMFNPSTFDGSSVDPIILKNWRTEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWESTQ 129

Query: 61  RT 63
           RT
Sbjct: 130 RT 131

BLAST of Bhi11G000379 vs. NCBI nr
Match: XP_038888017.1 (uncharacterized protein LOC120077950 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRKFNPSTFDGSSVDPIIAENWI EIET+FRHMNIPEEQKVN ATF+LRGD KFWW+ST+
Sbjct: 70  FRKFNPSTFDGSSVDPIIAENWIIEIETVFRHMNIPEEQKVNCATFILRGDTKFWWESTK 129

Query: 61  RT 63
           RT
Sbjct: 130 RT 131

BLAST of Bhi11G000379 vs. NCBI nr
Match: XP_038880430.1 (uncharacterized protein LOC120072084 [Benincasa hispida] >XP_038880431.1 uncharacterized protein LOC120072086 [Benincasa hispida])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRKFNPS FDGS VDPI AENWITEIETIFRHMNI EEQKVN ATFMLRGDAKFWW+STQ
Sbjct: 70  FRKFNPSIFDGSFVDPITAENWITEIETIFRHMNISEEQKVNCATFMLRGDAKFWWESTQ 129

Query: 61  RT 63
           RT
Sbjct: 130 RT 131

BLAST of Bhi11G000379 vs. ExPASy TrEMBL
Match: A0A6J1EKD9 (uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC111435460 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRK++P  F+G ++DP++ E+W+  IETIF HMN PE+QKV  A+FML+G+A FWW + Q
Sbjct: 90  FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMNCPEDQKVKCASFMLKGEAHFWWKTAQ 149

Query: 61  RT 63
           +T
Sbjct: 150 QT 151

BLAST of Bhi11G000379 vs. ExPASy TrEMBL
Match: A0A6J1HWE2 (uncharacterized protein LOC111467258 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467258 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRK++P  F+G ++DP++ E+W+  IETIF HM  PE+QKV  A+FML+G+A FWW + Q
Sbjct: 90  FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFWWKTAQ 149

Query: 61  RT 63
           +T
Sbjct: 150 QT 151

BLAST of Bhi11G000379 vs. ExPASy TrEMBL
Match: A0A6J1HS13 (uncharacterized protein LOC111467258 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467258 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRK++P  F+G ++DP++ E+W+  IETIF HM  PE+QKV  A+FML+G+A FWW + Q
Sbjct: 113 FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFWWKTAQ 172

Query: 61  RT 63
           +T
Sbjct: 173 QT 174

BLAST of Bhi11G000379 vs. ExPASy TrEMBL
Match: A0A6J1EUD2 (uncharacterized protein LOC111437854 OS=Cucurbita moschata OX=3662 GN=LOC111437854 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1   FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
           FRK +P TF+G  +DP+ AE W+  IET F HMN PE+ KVN  ++ML+G+  FWW + Q
Sbjct: 69  FRKHDPLTFEGKKIDPMAAEAWVEVIETTFGHMNCPEDTKVNCTSYMLKGEVHFWWKTAQ 128

Query: 61  RT 63
           RT
Sbjct: 129 RT 130

BLAST of Bhi11G000379 vs. ExPASy TrEMBL
Match: A0A6J1EYQ2 (uncharacterized protein LOC111440531 OS=Cucurbita moschata OX=3662 GN=LOC111440531 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1  FRKFNPSTFDGSSVDPIIAENWITEIETIFRHMNIPEEQKVNYATFMLRGDAKFWWDSTQ 60
          FRK +P TF+G  +DP+ AE W+  IET F HMN PE+ KVN  ++ML+G+  FWW + Q
Sbjct: 11 FRKHDPLTFEGKKIDPMAAEAWVEVIETTFGHMNCPEDTKVNCTSYMLKGEVHFWWKTAQ 70

Query: 61 RT 63
          RT
Sbjct: 71 RT 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038902446.12.8e-2796.77uncharacterized protein LOC120089092 [Benincasa hispida][more]
XP_038896490.11.4e-2693.55LOW QUALITY PROTEIN: uncharacterized protein LOC120084738 [Benincasa hispida][more]
XP_038902429.15.3e-2691.94uncharacterized protein LOC120089074 [Benincasa hispida][more]
XP_038888017.12.6e-2588.71uncharacterized protein LOC120077950 [Benincasa hispida][more]
XP_038880430.11.3e-2490.32uncharacterized protein LOC120072084 [Benincasa hispida] >XP_038880431.1 unchara... [more]
Match NameE-valueIdentityDescription
A0A6J1EKD91.2e-1554.84uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC1114354... [more]
A0A6J1HWE25.9e-1553.23uncharacterized protein LOC111467258 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS135.9e-1553.23uncharacterized protein LOC111467258 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EUD23.2e-1353.23uncharacterized protein LOC111437854 OS=Cucurbita moschata OX=3662 GN=LOC1114378... [more]
A0A6J1EYQ23.2e-1353.23uncharacterized protein LOC111440531 OS=Cucurbita moschata OX=3662 GN=LOC1114405... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000379Bhi11M000379mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding