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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTATATGTAATATAATAACTTTGTTTCCAAATTTTTTCTTTTCCATCATTATGTAGTATCTTTGTTGTTTCATAGTTTCCTTTCTTTTCGTTGTTGCTTAACTTTTATTTTCATCTTTAAACTAGATTGGTTAATCATTTTGGTTATTAGCTATCGTAATTGTTTTCTTCAATTCCTAAGCTTAAAAATTAAAATAAAAACTTCCTTTACTTAGTATTACTTTTAGCCCCAAAATCGTTTACCTAATACTCGTCTATACTATACATGATTTTTGTACATGCTCATATTAATATACTAGTAAACTCACATATCTTGTAGCATTGTTAAATGTGGAAATGCTTTAAATTTGTTATCTTAGTGCTTCGAACATCCAAGTATGGTATGCCTTGTTAAAATTCGTATTCAACATATTTCATTATTTATGGTTAATTACGATTATGACTTTAGGGTTTAGGGAAATACACTATACAAGTTCTCTAACTTTACTGGCGTTGTTTTGTATTTTGAAAACATTCTTTTTAATAATATTGTTTTCTTTCTGTCTGATGGACGTAGCTTACACACCATTAGTGTATCACGTATATCTGTGTGTCTATCTTTCTTTACATTATTTTTATATTCTTTAATTGTTCATTTCATATCATTAAACATAGGTGGAGATTTCGACGTCTAACTTTTTGCTCAAAAGTGTATATCTTCTAACACCTGGGCTATATTAGGTTGGTTTAAAATTTTAAAAATAAAAAAATAAAAAGAACGAGTTGTATTTAGAGCTAGAGGTTCATAATACTTTTGGATATGAGTATTATTACATAATAGCTATGACATATGTTTTTTTTATGTGGGATACAATATTATGAAAAATTAGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA mRNA sequence ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA Coding sequence (CDS) ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA Protein sequence KMSYEEVVMTDPMAPNNGSFNGGVPRRDANFPPSSWGDYLLSSHCNDNPVEDDKFGNNFKN
Homology
BLAST of Bhi11G000309 vs. NCBI nr
Match: XP_016900585.1 (PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]) HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05 Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0
Query: 2 MSYEEVVMTDPMAPNNGSFNGGV-PRRDANFPPSSWGDYLLSSHCNDNPVEDD 54
MSYE++ A NNGSF+ GV RR A FPPS WGDY LSSH N+ VED+
Sbjct: 1 MSYEKIT-----AANNGSFSDGVLRRRAAEFPPSPWGDYFLSSHFNNQLVEDN 48
BLAST of Bhi11G000309 vs. NCBI nr
Match: XP_038877743.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]) HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
Query: 6 EVVMTDPMAPNNGSFNGGVPRRDANFPPSSWGDYLLSSHCN 47
++V++D M PNN S + GVPRR ANF PS+WGD+ LS N
Sbjct: 4 QIVVSDSMTPNNDSLSHGVPRRSANFQPSAWGDHFLSYRYN 44
BLAST of Bhi11G000309 vs. ExPASy TrEMBL
Match: A0A1S4DXZ8 ((-)-germacrene D synthase-like OS=Cucumis melo OX=3656 GN=LOC103491132 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05 Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0
Query: 2 MSYEEVVMTDPMAPNNGSFNGGV-PRRDANFPPSSWGDYLLSSHCNDNPVEDD 54
MSYE++ A NNGSF+ GV RR A FPPS WGDY LSSH N+ VED+
Sbjct: 1 MSYEKIT-----AANNGSFSDGVLRRRAAEFPPSPWGDYFLSSHFNNQLVEDN 48
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_016900585.1 | 5.1e-05 | 58.49 | PREDICTED: (-)-germacrene D synthase-like [Cucumis melo] | [more] |
| XP_038877743.1 | 2.5e-04 | 56.10 | LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S4DXZ8 | 2.4e-05 | 58.49 | (-)-germacrene D synthase-like OS=Cucumis melo OX=3656 GN=LOC103491132 PE=4 SV=1 | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
Relationships
The following mRNA feature(s) are a part of this gene:
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