Bhi11G000309 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000309
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	(-)-germacrene D synthase-like
Location	chr11: 9285829 .. 9286884 (+)
RNA-Seq Expression	Bhi11G000309
Synteny	Bhi11G000309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTATATGTAATATAATAACTTTGTTTCCAAATTTTTTCTTTTCCATCATTATGTAGTATCTTTGTTGTTTCATAGTTTCCTTTCTTTTCGTTGTTGCTTAACTTTTATTTTCATCTTTAAACTAGATTGGTTAATCATTTTGGTTATTAGCTATCGTAATTGTTTTCTTCAATTCCTAAGCTTAAAAATTAAAATAAAAACTTCCTTTACTTAGTATTACTTTTAGCCCCAAAATCGTTTACCTAATACTCGTCTATACTATACATGATTTTTGTACATGCTCATATTAATATACTAGTAAACTCACATATCTTGTAGCATTGTTAAATGTGGAAATGCTTTAAATTTGTTATCTTAGTGCTTCGAACATCCAAGTATGGTATGCCTTGTTAAAATTCGTATTCAACATATTTCATTATTTATGGTTAATTACGATTATGACTTTAGGGTTTAGGGAAATACACTATACAAGTTCTCTAACTTTACTGGCGTTGTTTTGTATTTTGAAAACATTCTTTTTAATAATATTGTTTTCTTTCTGTCTGATGGACGTAGCTTACACACCATTAGTGTATCACGTATATCTGTGTGTCTATCTTTCTTTACATTATTTTTATATTCTTTAATTGTTCATTTCATATCATTAAACATAGGTGGAGATTTCGACGTCTAACTTTTTGCTCAAAAGTGTATATCTTCTAACACCTGGGCTATATTAGGTTGGTTTAAAATTTTAAAAATAAAAAAATAAAAAGAACGAGTTGTATTTAGAGCTAGAGGTTCATAATACTTTTGGATATGAGTATTATTACATAATAGCTATGACATATGTTTTTTTTATGTGGGATACAATATTATGAAAAATTAGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA

mRNA sequence

ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA

Coding sequence (CDS)

ACAAAATGTCATATGAAGAAGTTGTAATGACAGATCCAATGGCACCAAATAATGGCTCTTTCAATGGTGGTGTTCCTCGTCGAGATGCAAACTTTCCCCCAAGTTCTTGGGGAGACTATCTTCTTTCCTCTCATTGCAACGATAATCCGGTGGAAGACGACAAGTTCGGAAACAACTTCAAGAACTAA

Protein sequence

KMSYEEVVMTDPMAPNNGSFNGGVPRRDANFPPSSWGDYLLSSHCNDNPVEDDKFGNNFKN

Homology

[Close]

BLAST of Bhi11G000309 vs. NCBI nr
Match: XP_016900585.1 (PREDICTED: (-)-germacrene D synthase-like [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 2  MSYEEVVMTDPMAPNNGSFNGGV-PRRDANFPPSSWGDYLLSSHCNDNPVEDD 54
          MSYE++      A NNGSF+ GV  RR A FPPS WGDY LSSH N+  VED+
Sbjct: 1  MSYEKIT-----AANNGSFSDGVLRRRAAEFPPSPWGDYFLSSHFNNQLVEDN 48

[Close]

BLAST of Bhi11G000309 vs. NCBI nr
Match: XP_038877743.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 6  EVVMTDPMAPNNGSFNGGVPRRDANFPPSSWGDYLLSSHCN 47
          ++V++D M PNN S + GVPRR ANF PS+WGD+ LS   N
Sbjct: 4  QIVVSDSMTPNNDSLSHGVPRRSANFQPSAWGDHFLSYRYN 44

[Close]

BLAST of Bhi11G000309 vs. ExPASy TrEMBL
Match: A0A1S4DXZ8 ((-)-germacrene D synthase-like OS=Cucumis melo OX=3656 GN=LOC103491132 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 2  MSYEEVVMTDPMAPNNGSFNGGV-PRRDANFPPSSWGDYLLSSHCNDNPVEDD 54
          MSYE++      A NNGSF+ GV  RR A FPPS WGDY LSSH N+  VED+
Sbjct: 1  MSYEKIT-----AANNGSFSDGVLRRRAAEFPPSPWGDYFLSSHFNNQLVEDN 48

The following BLAST results are available for this feature:

BLAST of Bhi11G000309 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000309 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900585.1	5.1e-05	58.49	PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]	[more]
XP_038877743.1	2.5e-04	56.10	LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]	[more]

BLAST of Bhi11G000309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXZ8	2.4e-05	58.49	(-)-germacrene D synthase-like OS=Cucumis melo OX=3656 GN=LOC103491132 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000309	Bhi11M000309	mRNA