Bhi11G000124 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000124
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Late embryogenesis abundant protein 6
Location	chr11: 3281462 .. 3281749 (+)
RNA-Seq Expression	Bhi11G000124
Synteny	Bhi11G000124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

mRNA sequence

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

Coding sequence (CDS)

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

Protein sequence

MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHHHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI

Homology

[Close]

BLAST of Bhi11G000124 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 2  DAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHHH 61
          D + E+A  +T+EE++IA +RRKA  AEA  ++H AKA HA  KL +K+SH    H+  H
Sbjct: 27 DEKAERAMARTKEEKEIAHQRRKAKEAEANMDMHMAKAAHAEDKLMAKQSHY---HVTDH 86

Query: 62 PPMEGAAATNLGAANVPAAYPIP 85
           P            +VP   P+P
Sbjct: 87 GP------------HVPQQAPVP 94

[Close]

BLAST of Bhi11G000124 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-04
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 2  DAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHHH 61
          D + E+A  +T+EE++IA +RRKA  AEA  ++H AKA HA  KL +K+SH    H+  H
Sbjct: 27 DEKAERAMARTKEEKEIAHQRRKAKEAEANMDMHMAKAAHAEDKLMAKQSHY---HVTDH 86

Query: 62 PPMEGAAATNLGAANVPAAYPIP 85
           P            +VP   P+P
Sbjct: 87 GP------------HVPQQAPVP 94

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_038906206.1 (late embryogenesis abundant protein 6-like [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 2.6e-40
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D +VEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH
Sbjct: 26  LDEKVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI
Sbjct: 86  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 120

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_004148757.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KAE8650031.1 hypothetical protein Csa_009894 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D +VEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVLGGH HH
Sbjct: 26  LDEKVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
             PMEG AAT+LG A    AYPI + EGY+PGHKI
Sbjct: 86  QSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI 120

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_008448704.1 (PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo] >KAA0053052.1 seed maturation protein [Cucumis melo var. makuwa] >TYK11507.1 seed maturation protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVL-GGHLH 60
           +D +VEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVL GGHLH
Sbjct: 26  LDEKVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGGHLH 85

Query: 61  HHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HH P+EG AAT+LG      AYPI + EGYYPGHKI
Sbjct: 86  HHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_023553167.1 (late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D  V+KASVKT EERKIAEERRKAA AEAKRELHEAKARHAAQKLR+++SHVLG  LHH
Sbjct: 26  LDETVQKASVKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVLGHRLHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+EG +     AANVP AYPI + EGYYPGH+I
Sbjct: 86  QPPVEGGS-----AANVP-AYPIASPEGYYPGHRI 114

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: KAG6577696.1 (Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015739.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D +V+KAS KT EERKIAEERRKAA AEAKRELHEAKARHAAQKLR+++SHVLG  LHH
Sbjct: 26  LDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVLGHRLHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+EG +     AANVP AYPI + EGYYPGH+I
Sbjct: 86  QPPVEGGS-----AANVP-AYPIASPEGYYPGHRI 114

[Close]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL
Match: A0A5D3CHS9 (Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001710 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVL-GGHLH 60
           +D +VEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVL GGHLH
Sbjct: 26  LDEKVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGGHLH 85

Query: 61  HHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HH P+EG AAT+LG      AYPI + EGYYPGHKI
Sbjct: 86  HHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL
Match: A0A1S3BKB4 (uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVL-GGHLH 60
           +D +VEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVL GGHLH
Sbjct: 26  LDEKVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGGHLH 85

Query: 61  HHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HH P+EG AAT+LG      AYPI + EGYYPGHKI
Sbjct: 86  HHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL
Match: A0A0A0L1A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 4  QVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHHHPP 63
          QVEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVLGGH HH  P
Sbjct: 5  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSP 64

Query: 64 MEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
          MEG AAT+LG A    AYPI + EGY+PGHKI
Sbjct: 65 MEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

[Close]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL
Match: A0A6J1E5Y8 (late embryogenesis abundant protein 6-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431099 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D +V+KAS KT EERKIAEERRKAA AEAKRELHEAKARHAAQKLR+++SHV+G  LHH
Sbjct: 22  LDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHH 81

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+EG +     AANVP AYPI + EGYYPGH+I
Sbjct: 82  QPPVEGGS-----AANVP-AYPIASPEGYYPGHRI 110

[Close]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL
Match: A0A6J1E6N7 (late embryogenesis abundant protein 6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431099 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHH 60
           +D +V+KAS KT EERKIAEERRKAA AEAKRELHEAKARHAAQKLR+++SHV+G  LHH
Sbjct: 26  LDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+EG +     AANVP AYPI + EGYYPGH+I
Sbjct: 86  QPPVEGGS-----AANVP-AYPIASPEGYYPGHRI 114

The following BLAST results are available for this feature:

BLAST of Bhi11G000124 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	3.8e-05	39.76	Late embryogenesis abundant protein, group 1 protein	[more]

BLAST of Bhi11G000124 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	5.3e-04	39.76	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of Bhi11G000124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906206.1	2.6e-40	96.84	late embryogenesis abundant protein 6-like [Benincasa hispida]	[more]
XP_004148757.1	1.7e-28	77.89	late embryogenesis abundant protein 6 [Cucumis sativus] >KAE8650031.1 hypothetic...	[more]
XP_008448704.1	2.3e-28	78.13	PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo] >KAA0053052.1 see...	[more]
XP_023553167.1	4.4e-24	73.68	late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]	[more]
KAG6577696.1	7.6e-24	72.63	Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Bhi11G000124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHS9	1.1e-28	78.13	Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BKB4	1.1e-28	78.13	uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=...	[more]
A0A0A0L1A9	1.9e-28	80.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=3 SV=1	[more]
A0A6J1E5Y8	8.2e-24	71.58	late embryogenesis abundant protein 6-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1E6N7	8.2e-24	71.58	late embryogenesis abundant protein 6-like isoform X1 OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR33493:SF6	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6	coord: 2..81
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 4..45 e-value: 2.4E-6 score: 28.1
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 2..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000124	Bhi11M000124	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy