Bhi10G001823 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G001823
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem II protein D1
Location	chr10: 57354145 .. 57354577 (+)
RNA-Seq Expression	Bhi10G001823
Synteny	Bhi10G001823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAGCTGTTGTTCCCCTCCTAAGGGCAGGTTCTTACGCGTTACTCACTCGTCCGCCACTGGAAACACCACTTCCCGTCCAACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

mRNA sequence

TTCCAGCTGTTGTTCCCCTCCTAAGGGCAGGTTCTTACGCGTTACTCACTCGTCCGCCACTGGAAACACCACTTCCCGTCCAACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Coding sequence (CDS)

ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTAATTTGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCACTTCATATTCGCCTGGAGTTCGCTCCCAAAAATATAACCATCCCCACTTCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGAGGGATCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGA

Protein sequence

MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPFSFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR

Homology

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: KAF6138347.1 (hypothetical protein GIB67_033149 [Kingdonia uniflora] >KAF6138349.1 hypothetical protein GIB67_033151 [Kingdonia uniflora] >KAF6138383.1 hypothetical protein GIB67_037673 [Kingdonia uniflora] >KAF6142940.1 hypothetical protein GIB67_003896 [Kingdonia uniflora] >KAF6143170.1 hypothetical protein GIB67_033932 [Kingdonia uniflora])

HSP 1 Score: 174.5 bits (441), Expect = 4.5e-40
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSF+PRHNLYPC SYSPGVRSQKY+HPH LTSIPRASY F
Sbjct: 1  MRFIVALLIASLFVDKADSELSFMPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYLF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG G+S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGGGASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: CAB4265712.1 (unnamed protein product [Prunus armeniaca] >CAB4269451.1 unnamed protein product [Prunus armeniaca] >CAB4289456.1 unnamed protein product [Prunus armeniaca] >CAB4299873.1 unnamed protein product [Prunus armeniaca] >CAB4314310.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 174.1 bits (440), Expect = 5.9e-40
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSPGVRSQKY+HP+ LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGVRSQKYSHPYPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG  +S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGGEASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: KAF6139255.1 (hypothetical protein GIB67_021465 [Kingdonia uniflora])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFV+KA+ ELSF+PR+NLYPC SYSPGVRSQKY+HPH LTSIPRA+Y F
Sbjct: 1  MRFIVALLIASLFVEKADSELSFMPRNNLYPCASYSPGVRSQKYSHPHPLTSIPRATYLF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG G+S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGRGASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: KAF3952386.1 (hypothetical protein CMV_022051 [Castanea mollissima])

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFV+KA+ ELSFIPRHNLYPC S SPGVRSQKY+HP+ LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVNKADSELSFIPRHNLYPCASDSPGVRSQKYSHPYPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG  +SQNRKT+IGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGGRASQNRKTYIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. NCBI nr
Match: KAF5204818.1 (30S ribosomal protein S12, chloroplastic-like [Thalictrum thalictroides])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSPG  SQKY+H + LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGGCSQKYSHLYPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFD G G+SQNRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDRGGGASQNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL
Match: A0A7J7L728 (Uncharacterized protein ycf68 OS=Kingdonia uniflora OX=39325 GN=GIB67_003896 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.2e-40
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSF+PRHNLYPC SYSPGVRSQKY+HPH LTSIPRASY F
Sbjct: 1  MRFIVALLIASLFVDKADSELSFMPRHNLYPCASYSPGVRSQKYSHPHPLTSIPRASYLF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG G+S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGGGASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL
Match: A0A6J5TZG0 (Uncharacterized protein ycf68 OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15018 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSPGVRSQKY+HP+ LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGVRSQKYSHPYPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG  +S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGGEASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL
Match: A0A7J7L9E2 (Uncharacterized protein ycf68 OS=Kingdonia uniflora OX=39325 GN=GIB67_021465 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.4e-39
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFV+KA+ ELSF+PR+NLYPC SYSPGVRSQKY+HPH LTSIPRA+Y F
Sbjct: 1  MRFIVALLIASLFVEKADSELSFMPRNNLYPCASYSPGVRSQKYSHPHPLTSIPRATYLF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFDHG G+S+NRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDHGRGASKNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL
Match: A0A7J6X7E6 (Uncharacterized protein ycf68 OS=Thalictrum thalictroides OX=46969 GN=FRX31_005598 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.8e-38
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFVDKA+ ELSFIPRHNLYPC SYSPG  SQKY+H + LTSIPRASYPF
Sbjct: 1  MRFIVALLIASLFVDKADSELSFIPRHNLYPCASYSPGGCSQKYSHLYPLTSIPRASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLYR 98
          SFD G G+SQNRKTHIGFRDNQARTDDF HVK TLYR
Sbjct: 61 SFDRGGGASQNRKTHIGFRDNQARTDDFHHVKVTLYR 97

[Close]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL
Match: A0A6A1UFX0 (Uncharacterized protein ycf68 OS=Morella rubra OX=262757 GN=CJ030_MR0G027061 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.3e-37
Identity = 81/96 (84.38%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MRFIVALLIASLFVDKANLELSFIPRHNLYPCTSYSPGVRSQKYNHPHFLTSIPRASYPF 60
          MRFIVALLIASLFV+KA+ ELSFIPRHNLYPC S SPGVRSQKY+HP+ LTSIP+ASYPF
Sbjct: 1  MRFIVALLIASLFVNKADSELSFIPRHNLYPCASDSPGVRSQKYSHPYPLTSIPQASYPF 60

Query: 61 SFDHGEGSSQNRKTHIGFRDNQARTDDFRHVKATLY 97
          SFDHG  +SQNRKT+IGFRDNQARTDDF HVK TLY
Sbjct: 61 SFDHGGRASQNRKTYIGFRDNQARTDDFHHVKVTLY 96

The following BLAST results are available for this feature:

BLAST of Bhi10G001823 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001823 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001823 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF6138347.1	4.5e-40	87.63	hypothetical protein GIB67_033149 [Kingdonia uniflora] >KAF6138349.1 hypothetica...	[more]
CAB4265712.1	5.9e-40	87.63	unnamed protein product [Prunus armeniaca] >CAB4269451.1 unnamed protein product...	[more]
KAF6139255.1	1.1e-38	84.54	hypothetical protein GIB67_021465 [Kingdonia uniflora]	[more]
KAF3952386.1	5.5e-38	85.57	hypothetical protein CMV_022051 [Castanea mollissima]	[more]
KAF5204818.1	1.6e-37	85.57	30S ribosomal protein S12, chloroplastic-like [Thalictrum thalictroides]	[more]

BLAST of Bhi10G001823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7L728	2.2e-40	87.63	Uncharacterized protein ycf68 OS=Kingdonia uniflora OX=39325 GN=GIB67_003896 PE=...	[more]
A0A6J5TZG0	2.9e-40	87.63	Uncharacterized protein ycf68 OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15018 ...	[more]
A0A7J7L9E2	5.4e-39	84.54	Uncharacterized protein ycf68 OS=Kingdonia uniflora OX=39325 GN=GIB67_021465 PE=...	[more]
A0A7J6X7E6	7.8e-38	85.57	Uncharacterized protein ycf68 OS=Thalictrum thalictroides OX=46969 GN=FRX31_0055...	[more]
A0A6A1UFX0	2.3e-37	84.38	Uncharacterized protein ycf68 OS=Morella rubra OX=262757 GN=CJ030_MR0G027061 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890:SF7	BNAUNNG00850D PROTEIN	coord: 15..96
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 15..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001823	Bhi10M001823	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042170	plastid membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding