Bhi10G001609 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G001609
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr10: 50037602 .. 50038226 (-)
RNA-Seq Expression	Bhi10G001609
Synteny	Bhi10G001609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACCTGGTTGGCCTAGGTATTGTCATTACATCTCCTCAACATAAAGGTGAGTTCTTGAATCTGATTGTTAATGAGTCTATTGTTTCAAAAAATGCTGGTGAAACTGTTGAAACTGTGCACGTTAACTATGTTATTGTCTCTATTGTTCCTGAGGAAATTTGTGCTAAGAAAGAAATCAGGGCTTCTAAGTTTCCTAAGTCGGTCAGTTTTGCTGGTAAGAGTACTGATTTTGTTAATAGTGTTTTCAACTCTGAAGTGGAGTTGTCTAACCCTAGTAACAACGATCGAGAGAACTTAAAGCTGTTAATTATGGTGTGGATAACCATCCACTTGATTGGTTATTAAATGTTATTACATCTATGTTCTGAATGAGGATGGTGTTTCTCAAAATGAGTCTAGTCCTAGGTTGTCTGTGTTGCCCTCTGAGCGTGTTGAATATGAGATTGAGAAGGAGAATACTAATATTTTTTTGTATGATAATGTGAATATGGATGAAACCGAGGAGAGAAACCTTGATGTTTCAGAAGAAGAGCATGAAAGTGGAGATGTGTCAGATTCTGTTGATGACACATTAGAAGACAACATCCCTATTAACTTGCTGAGACAAAGAGGAAAATAG

mRNA sequence

ATGGAAGACCTGGTTGGCCTAGGTATTGTCATTACATCTCCTCAACATAAAGGTGAGTTCTTGAATCTGATTGTTAATGAGTCTATTGTTTCAAAAAATGCTGGTGAAACTGTTGAAACTGTGCACGTTAACTATGTTATTGTCTCTATTGTTCCTGAGGAAATTTGTGCTAAGAAAGAAATCAGGGCTTCTAAGTTTCCTAAGTCGGTCAGTTTTGCTGGTAAGAGTACTGATTTTGTTAATAGTGTTTTCAACTCTGAAGTGGAGTTGTCTAACCCTAGTAACAACGATCGAGAGAACTTAAAGCTGTTAATTATGGATGGTGTTTCTCAAAATGAGTCTAGTCCTAGGTTGTCTGTGTTGCCCTCTGAGCGTGTTGAATATGAGATTGAGAAGGAGAATACTAATATTTTTTTGTATGATAATGTGAATATGGATGAAACCGAGGAGAGAAACCTTGATGTTTCAGAAGAAGAGCATGAAAGTGGAGATGTGTCAGATTCTGTTGATGACACATTAGAAGACAACATCCCTATTAACTTGCTGAGACAAAGAGGAAAATAG

Coding sequence (CDS)

ATGGAAGACCTGGTTGGCCTAGGTATTGTCATTACATCTCCTCAACATAAAGGTGAGTTCTTGAATCTGATTGTTAATGAGTCTATTGTTTCAAAAAATGCTGGTGAAACTGTTGAAACTGTGCACGTTAACTATGTTATTGTCTCTATTGTTCCTGAGGAAATTTGTGCTAAGAAAGAAATCAGGGCTTCTAAGTTTCCTAAGTCGGTCAGTTTTGCTGGTAAGAGTACTGATTTTGTTAATAGTGTTTTCAACTCTGAAGTGGAGTTGTCTAACCCTAGTAACAACGATCGAGAGAACTTAAAGCTGTTAATTATGGATGGTGTTTCTCAAAATGAGTCTAGTCCTAGGTTGTCTGTGTTGCCCTCTGAGCGTGTTGAATATGAGATTGAGAAGGAGAATACTAATATTTTTTTGTATGATAATGTGAATATGGATGAAACCGAGGAGAGAAACCTTGATGTTTCAGAAGAAGAGCATGAAAGTGGAGATGTGTCAGATTCTGTTGATGACACATTAGAAGACAACATCCCTATTAACTTGCTGAGACAAAGAGGAAAATAG

Protein sequence

MEDLVGLGIVITSPQHKGEFLNLIVNESIVSKNAGETVETVHVNYVIVSIVPEEICAKKEIRASKFPKSVSFAGKSTDFVNSVFNSEVELSNPSNNDRENLKLLIMDGVSQNESSPRLSVLPSERVEYEIEKENTNIFLYDNVNMDETEERNLDVSEEEHESGDVSDSVDDTLEDNIPINLLRQRGK

Homology

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BLAST of Bhi10G001609 vs. NCBI nr
Match: XP_038882438.1 (uncharacterized protein LOC120073709 [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 70  VSFAGKSTDFVNSVFNSEVELSNPSNNDRENL---------------------KLLIMDG 129
           +S+AG+STDF+NS+ N     SNPSN D++NL                     ++L  D 
Sbjct: 1   MSYAGESTDFINSILNPGGNRSNPSNQDQKNLNVVNSEGNNHSIDVLSNVVTSRVLNEDD 60

Query: 130 VSQNESSPRLSVLPSERVEYEIEKENTNIFLYDNVNMDETEERNLDVSEEEHESGDVSDS 183
           ++QNESSPR +V P ERVE E E +N +   + +V ++E  E+  D S EE+ES DVSD 
Sbjct: 61  ITQNESSPRETVFPFERVEIENETKNNHPVEFADVTINEIVEKTPDDSNEENESEDVSDF 120

The following BLAST results are available for this feature:

BLAST of Bhi10G001609 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001609 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882438.1	1.4e-13	42.54	uncharacterized protein LOC120073709 [Benincasa hispida]	[more]

BLAST of Bhi10G001609 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001609	Bhi10M001609	mRNA