Bhi10G001185 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G001185
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr10: 36738984 .. 36739208 (+)
RNA-Seq Expression	Bhi10G001185
Synteny	Bhi10G001185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGCTCGAATGAGGAGGCCGAGGAAGAAGATCCTCATTCAACAAAGAGCATAAGAAGAAATATTATAGATGATATAGATAATGTCGTCAAGCCTGGTATAGAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTGACCCATTTGACCACAACAATAGGGATTTTTCACCTGTTACTACTCCAAATCCATCCCCACATGTCAATGACATTGTTCATCCCTAG

mRNA sequence

ATGGGTAGCTCGAATGAGGAGGCCGAGGAAGAAGATCCTCATTCAACAAAGAGCATAAGAAGAAATATTATAGATGATATAGATAATGTCGTCAAGCCTGGTATAGAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTGACCCATTTGACCACAACAATAGGGATTTTTCACCTGTTACTACTCCAAATCCATCCCCACATGTCAATGACATTGTTCATCCCTAG

Coding sequence (CDS)

ATGGGTAGCTCGAATGAGGAGGCCGAGGAAGAAGATCCTCATTCAACAAAGAGCATAAGAAGAAATATTATAGATGATATAGATAATGTCGTCAAGCCTGGTATAGAGAGAGAGGTTAGGGAAACATCTCCTTTTTCTGACCCATTTGACCACAACAATAGGGATTTTTCACCTGTTACTACTCCAAATCCATCCCCACATGTCAATGACATTGTTCATCCCTAG

Protein sequence

MGSSNEEAEEEDPHSTKSIRRNIIDDIDNVVKPGIEREVRETSPFSDPFDHNNRDFSPVTTPNPSPHVNDIVHP

Homology

[Close]

BLAST of Bhi10G001185 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_016717 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-05
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 3  SSNEEAEEEDPHSTKSIRRNIIDDIDNVVKPGIEREVRETSPFSDPFDHNNRDFSPVTTP 62
          SS++EA EE+          I++D DNV  P IERE+RETSP+ DP  HNN ++   TTP
Sbjct: 7  SSDDEANEEE------AMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 66

Query: 63 NPSPHV 69
           PS  V
Sbjct: 67 LPSSQV 66

[Close]

BLAST of Bhi10G001185 vs. ExPASy TrEMBL
Match: A0A0A0LMZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 36 EREVRETSPFSDPFDHNNRDFSPVTTPNPSPHVNDIVHP 75
          ERE+RETSP+SDP  HNN DF   TTP PS HVN ++HP
Sbjct: 9  EREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMIHP 47

[Close]

BLAST of Bhi10G001185 vs. ExPASy TrEMBL
Match: A0A0A0K715 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 3  SSNEEAEEEDPHSTKSIRRNIIDDIDNVVKPGIEREVRETSPFSDPFDHNNRDFSPVTTP 62
          SS++EA EE+          I++D DNV  P IERE+RETSP+ DP  HNN ++   TTP
Sbjct: 7  SSDDEANEEE------AMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 66

Query: 63 NPSPHV 69
           PS  V
Sbjct: 67 LPSSQV 66

The following BLAST results are available for this feature:

BLAST of Bhi10G001185 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001185 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001185 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44082.1	4.7e-05	48.48	hypothetical protein Csa_016717 [Cucumis sativus]	[more]

BLAST of Bhi10G001185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMZ0	1.0e-05	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1	[more]
A0A0A0K715	2.3e-05	48.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001185	Bhi10M001185	mRNA