Bhi10G001067 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G001067
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	zinc finger protein MAGPIE-like
Location	chr10: 32809082 .. 32809444 (+)
RNA-Seq Expression	Bhi10G001067
Synteny	Bhi10G001067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACTACTACTACTACCACTACTAGATCTGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTAATAATGGGGGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTTGAGTGTGGAAGTGGAAGTGGAACAACAGGAACAGGGGAGACGAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG

mRNA sequence

ATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACTACTACTACTACCACTACTAGATCTGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTAATAATGGGGGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTTGAGTGTGGAAGTGGAAGTGGAACAACAGGAACAGGGGAGACGAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG

Coding sequence (CDS)

ATGTCAGCTACAGCTTTGTTGCAGAAAGCTGCTGAAATTGGGCCAACTTGTACTACTACTACTACCACTACTAGATCTGCCCCATCACTACTACAACTACAACAGGGGTTTTTGTTTAATAATGGGGGTGAGTTTTGTAATTCTTCTAGTACTACAAGTAGACCAATTATTGTTGTTGAGAATGAGAATAATGGGAATGGGAATGGGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTTGAGTGTGGAAGTGGAAGTGGAACAACAGGAACAGGGGAGACGAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG

Protein sequence

MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVENENNGNGNGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDFLGVGAKTICHASASINGWI

Homology

[Close]

BLAST of Bhi10G001067 vs. TAIR 10
Match: AT1G03840.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-12
Identity = 56/140 (40.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQ-----QGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAA++G T +T+ TTT +      LQ        +  +GG     +S  S  
Sbjct: 375 MSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNS 434

Query: 61  IIVVENENNG--------------NGNGN-EMYTAKRRRTQSEFECGSGSGTTGTGETRD 120
           + ++ N NNG              +G G  + Y  KRRR     + G+     G G+TRD
Sbjct: 435 VELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRV----DIGNAG---GGGQTRD 494

[Close]

BLAST of Bhi10G001067 vs. TAIR 10
Match: AT1G03840.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-12
Identity = 56/140 (40.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQ-----QGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAA++G T +T+ TTT +      LQ        +  +GG     +S  S  
Sbjct: 373 MSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNS 432

Query: 61  IIVVENENNG--------------NGNGN-EMYTAKRRRTQSEFECGSGSGTTGTGETRD 120
           + ++ N NNG              +G G  + Y  KRRR     + G+     G G+TRD
Sbjct: 433 VELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRV----DIGNAG---GGGQTRD 492

[Close]

BLAST of Bhi10G001067 vs. TAIR 10
Match: AT5G44160.1 (C2H2-like zinc finger protein )

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-11
Identity = 59/139 (42.45%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTT------RSAPSLLQLQQGFLFNNGGEFC------NS 60
           MSATALLQKAAEIG T TTT  T       +S P L    Q   +++G +F       N+
Sbjct: 336 MSATALLQKAAEIGATSTTTAATNDPSTFLQSFP-LKSTDQTTSYDSGEKFFALFGSNNN 395

Query: 61  SSTTSRPIIVVENENNGNG-------NGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDF 120
               SR     E EN  N        +  + Y  KRRR     E G G      G+TRDF
Sbjct: 396 IGLMSRSHDHQEIENARNDVTVASALDELQNYPWKRRRVDGGGEVGGG------GQTRDF 455

[Close]

BLAST of Bhi10G001067 vs. ExPASy Swiss-Prot
Match: Q9ZWA6 (Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 56/140 (40.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQ-----QGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAA++G T +T+ TTT +      LQ        +  +GG     +S  S  
Sbjct: 375 MSATALLQKAAQMGATSSTSPTTTITTDQSAYLQSFASKSNQIVEDGGSDRFFASFGSNS 434

Query: 61  IIVVENENNG--------------NGNGN-EMYTAKRRRTQSEFECGSGSGTTGTGETRD 120
           + ++ N NNG              +G G  + Y  KRRR     + G+     G G+TRD
Sbjct: 435 VELMSNNNNGLHEIGNPRNGVTVVSGMGELQNYPWKRRRV----DIGNAG---GGGQTRD 494

[Close]

BLAST of Bhi10G001067 vs. ExPASy Swiss-Prot
Match: Q9FFH3 (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-10
Identity = 59/139 (42.45%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTT------RSAPSLLQLQQGFLFNNGGEFC------NS 60
           MSATALLQKAAEIG T TTT  T       +S P L    Q   +++G +F       N+
Sbjct: 336 MSATALLQKAAEIGATSTTTAATNDPSTFLQSFP-LKSTDQTTSYDSGEKFFALFGSNNN 395

Query: 61  SSTTSRPIIVVENENNGNG-------NGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDF 120
               SR     E EN  N        +  + Y  KRRR     E G G      G+TRDF
Sbjct: 396 IGLMSRSHDHQEIENARNDVTVASALDELQNYPWKRRRVDGGGEVGGG------GQTRDF 455

[Close]

BLAST of Bhi10G001067 vs. NCBI nr
Match: XP_038902093.1 (LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.1e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVE 60
           MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVE
Sbjct: 305 MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVE 364

Query: 61  NENNGNGNGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDFLGVGAKTICHASASINGWI 120
           NENNGNGNGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDFLGVGAKTICHASASINGWI
Sbjct: 365 NENNGNGNGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDFLGVGAKTICHASASINGWI 424

[Close]

BLAST of Bhi10G001067 vs. NCBI nr
Match: XP_038902512.1 (zinc finger protein NUTCRACKER-like [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVE 60
           MSATALLQKAAEIGPTC TTTTTTRS PSLLQLQQGFLFNNG EFCNSSSTTSRPIIVVE
Sbjct: 145 MSATALLQKAAEIGPTC-TTTTTTRSTPSLLQLQQGFLFNNGSEFCNSSSTTSRPIIVVE 204

Query: 61  NENNGNGNGNEMYTAKRRRTQSEFECGSGSGT--TGTGETRD 101
           NEN  NGNGNEMYTAK+RRT SEFECGSGSG+  TG GETR+
Sbjct: 205 NEN--NGNGNEMYTAKQRRTHSEFECGSGSGSGITGIGETRE 243

[Close]

BLAST of Bhi10G001067 vs. NCBI nr
Match: XP_004138788.1 (zinc finger protein MAGPIE [Cucumis sativus] >KGN63204.1 hypothetical protein Csa_022212 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-34
Identity = 92/127 (72.44%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCT-TTTTTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T + ++ T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 305 MSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 364

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSGSGT--TGTGETRDFLGVGAKTICHAS 120
           I+VVEN      NG+EMYTAKRRR+QSEFECG+G+GT  TGTGETRDFLGVGAKTICHAS
Sbjct: 365 IVVVEN------NGSEMYTAKRRRSQSEFECGNGNGTTGTGTGETRDFLGVGAKTICHAS 422

[Close]

BLAST of Bhi10G001067 vs. NCBI nr
Match: XP_008455947.2 (PREDICTED: zinc finger protein MAGPIE-like [Cucumis melo] >TYK20427.1 zinc finger protein MAGPIE-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 6.6e-33
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTT-TTTTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T ++ + T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 302 MSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 361

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSG---SGT-TGTGETRDFLGVGAKTICH 120
           I+VVEN      NG+EMYTAKRRR+QSEFECGSG   +GT TGTGETRDFLGVGAKTICH
Sbjct: 362 IVVVEN------NGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTICH 421

[Close]

BLAST of Bhi10G001067 vs. NCBI nr
Match: KAA0067487.1 (zinc finger protein MAGPIE-like [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 91/129 (70.54%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTT-TTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T ++++ T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 302 MSATALLQKAAEIGATSSSSSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 361

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSG---SGT-TGTGETRDFLGVGAKTICH 120
           I+VVEN      NG+EMYTAKRRR+QSEFECGSG   +GT TGTGETRDFLGVGAKT CH
Sbjct: 362 IVVVEN------NGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTTCH 421

[Close]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL
Match: A0A0A0LQA1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.9e-35
Identity = 92/127 (72.44%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCT-TTTTTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T + ++ T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 305 MSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 364

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSGSGT--TGTGETRDFLGVGAKTICHAS 120
           I+VVEN      NG+EMYTAKRRR+QSEFECG+G+GT  TGTGETRDFLGVGAKTICHAS
Sbjct: 365 IVVVEN------NGSEMYTAKRRRSQSEFECGNGNGTTGTGTGETRDFLGVGAKTICHAS 422

[Close]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL
Match: A0A5D3DA24 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold604G00130 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-33
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTT-TTTTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T ++ + T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 302 MSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 361

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSG---SGT-TGTGETRDFLGVGAKTICH 120
           I+VVEN      NG+EMYTAKRRR+QSEFECGSG   +GT TGTGETRDFLGVGAKTICH
Sbjct: 362 IVVVEN------NGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTICH 421

[Close]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL
Match: A0A1S3C2S8 (zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-33
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTT-TTTTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T ++ + T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 302 MSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 361

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSG---SGT-TGTGETRDFLGVGAKTICH 120
           I+VVEN      NG+EMYTAKRRR+QSEFECGSG   +GT TGTGETRDFLGVGAKTICH
Sbjct: 362 IVVVEN------NGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTICH 421

[Close]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL
Match: A0A5A7VJW9 (Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001720 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.3e-33
Identity = 91/129 (70.54%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTT-TTTRSAP---SLLQL-QQGFLFNNGGEFCNSSSTTSRP 60
           MSATALLQKAAEIG T ++++ T TRSA    SLLQ+ QQGFLFNNG EFCN   T + P
Sbjct: 302 MSATALLQKAAEIGATSSSSSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCN---TNNNP 361

Query: 61  IIVVENENNGNGNGNEMYTAKRRRTQSEFECGSG---SGT-TGTGETRDFLGVGAKTICH 120
           I+VVEN      NG+EMYTAKRRR+QSEFECGSG   +GT TGTGETRDFLGVGAKT CH
Sbjct: 362 IVVVEN------NGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTTCH 421

[Close]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL
Match: A0A6J1J796 (zinc finger protein NUTCRACKER-like OS=Cucurbita maxima OX=3661 GN=LOC111484111 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MSATALLQKAAEIGPTCTTTTTTTRSAPSLLQLQQGFLFNNGGEFCNSSSTTSRPIIVVE 60
           MSATALLQKAAEIGP        + S  S++ LQ+G LFNNG EFCN+   T+ PI V+E
Sbjct: 219 MSATALLQKAAEIGP-------ISSSGHSVI-LQEGSLFNNGSEFCNAG--TTNPIGVIE 278

Query: 61  NENNGNGNGNEMYTAKRRRTQSEFECGSGSGTTGTGETRDFLGVGAKTICHASASINGWI 120
           NE       NE+YTAKRRRTQSE ECG+   T   G TRDFLGV A+TICH+S++I GWI
Sbjct: 279 NE-------NELYTAKRRRTQSEVECGA---TGAAGLTRDFLGVSAQTICHSSSTIKGWI 318

The following BLAST results are available for this feature:

BLAST of Bhi10G001067 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03840.1	9.0e-12	40.00	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G03840.2	9.0e-12	40.00	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G44160.1	5.8e-11	42.45	C2H2-like zinc finger protein	[more]

BLAST of Bhi10G001067 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZWA6	1.3e-10	40.00	Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1	[more]
Q9FFH3	8.2e-10	42.45	Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=1 SV=1	[more]

BLAST of Bhi10G001067 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902093.1	4.1e-59	100.00	LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Benincasa hispida]	[more]
XP_038902512.1	1.3e-36	88.24	zinc finger protein NUTCRACKER-like [Benincasa hispida]	[more]
XP_004138788.1	2.1e-34	72.44	zinc finger protein MAGPIE [Cucumis sativus] >KGN63204.1 hypothetical protein Cs...	[more]
XP_008455947.2	6.6e-33	71.32	PREDICTED: zinc finger protein MAGPIE-like [Cucumis melo] >TYK20427.1 zinc finge...	[more]
KAA0067487.1	1.9e-32	70.54	zinc finger protein MAGPIE-like [Cucumis melo var. makuwa]	[more]

BLAST of Bhi10G001067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQA1	9.9e-35	72.44	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G409480 P...	[more]
A0A5D3DA24	3.2e-33	71.32	Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C2S8	3.2e-33	71.32	zinc finger protein MAGPIE-like OS=Cucumis melo OX=3656 GN=LOC103496010 PE=4 SV=...	[more]
A0A5A7VJW9	9.3e-33	70.54	Zinc finger protein MAGPIE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A6J1J796	2.3e-23	59.17	zinc finger protein NUTCRACKER-like OS=Cucurbita maxima OX=3661 GN=LOC111484111 ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001067	Bhi10M001067	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity