Bhi10G000687 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G000687
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Superoxide dismutase
Location	chr10: 17910830 .. 17911033 (-)
RNA-Seq Expression	Bhi10G000687
Synteny	Bhi10G000687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCTGTTGGAGAGATCATGCGTCTTATCTTTCGAATTTCAACAAGGCTCTTGACCAGCTCGATCCTGCCATGGCTGAGGGACGCTCTTCTAATGCTGTTCAACTGCAGAGAGCAATCAGATTCAATGGCGGAGGTACTGCATTTTATTTGGAGATCAATCATATTATTCTTTTCACTGATACGAGTACTTACTGTTGA

mRNA sequence

ATGGAGCTCTGTTGGAGAGATCATGCGTCTTATCTTTCGAATTTCAACAAGGCTCTTGACCAGCTCGATCCTGCCATGGCTGAGGGACGCTCTTCTAATGCTGTTCAACTGCAGAGAGCAATCAGATTCAATGGCGGAGGTACTGCATTTTATTTGGAGATCAATCATATTATTCTTTTCACTGATACGAGTACTTACTGTTGA

Coding sequence (CDS)

ATGGAGCTCTGTTGGAGAGATCATGCGTCTTATCTTTCGAATTTCAACAAGGCTCTTGACCAGCTCGATCCTGCCATGGCTGAGGGACGCTCTTCTAATGCTGTTCAACTGCAGAGAGCAATCAGATTCAATGGCGGAGGTACTGCATTTTATTTGGAGATCAATCATATTATTCTTTTCACTGATACGAGTACTTACTGTTGA

Protein sequence

MELCWRDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTDTSTYC

Homology

[Close]

BLAST of Bhi10G000687 vs. TAIR 10
Match: AT3G10920.1 (manganese superoxide dismutase 1 )

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++N+N AL+QLD A+ +G +S  V+LQ AI+FNGGG      +NH I +
Sbjct: 58  KHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGG-----HVNHSIFW 107

[Close]

BLAST of Bhi10G000687 vs. TAIR 10
Match: AT3G10920.2 (manganese superoxide dismutase 1 )

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++N+N AL+QLD A+ +G +S  V+LQ AI+FNGGG      +NH I +
Sbjct: 58  KHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGG-----HVNHSIFW 107

[Close]

BLAST of Bhi10G000687 vs. TAIR 10
Match: AT3G56350.1 (Iron/manganese superoxide dismutase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.3e-07
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++ +NKAL+ L  AMA+G  S+ V+LQ  I+FNGGG      +NH I +
Sbjct: 63  KHHQTYVTQYNKALNSLRSAMADGDHSSVVKLQSLIKFNGGG-----HVNHAIFW 112

[Close]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot
Match: P41980 (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays OX=4577 GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + HA+Y+ N+NKAL+QLD A+A+G +S  VQLQ AI+FNGGG      +NH I +
Sbjct: 60  KHHATYVGNYNKALEQLDAAVAKGDASAVVQLQGAIKFNGGG-----HVNHSIFW 109

[Close]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot
Match: P09233 (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays OX=4577 GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-08
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + HA+Y++N+NKAL+QL+ A+++G +S  VQLQ AI+FNGGG      +NH I +
Sbjct: 62  KHHATYVANYNKALEQLETAVSKGDASAVVQLQAAIKFNGGG-----HVNHSIFW 111

[Close]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot
Match: Q43008 (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SODA PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-08
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTD 63
           + HA+Y++N+NKAL+QLD A+A+G +   V LQ AI+FNGGG      +NH I + +
Sbjct: 58  KHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGG-----HVNHSIFWNN 109

[Close]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot
Match: P41979 (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays OX=4577 GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           ++HA+Y+ N+NKAL+Q+D  + +G  S  VQLQ AI+FNGGG      +NH I +
Sbjct: 60  KNHATYVVNYNKALEQIDDVVVKGDDSAVVQLQGAIKFNGGG-----HVNHSIFW 109

[Close]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot
Match: P41978 (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays OX=4577 GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-07
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + HA+Y+ N+NKAL+QLD  + +G +S  VQLQ AI+FNGGG       NH I +
Sbjct: 60  KHHATYVVNYNKALEQLDAVVVKGDASAVVQLQGAIKFNGGG-----HFNHSIFW 109

[Close]

BLAST of Bhi10G000687 vs. NCBI nr
Match: KAF8397121.1 (hypothetical protein HHK36_016028 [Tetracentron sinense])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++N+NKAL+QLD AMA+G SS  V+LQ AI+FNGGG      INH I +
Sbjct: 69  KHHQTYITNYNKALEQLDEAMAKGDSSTVVKLQSAIKFNGGG-----HINHSIFW 118

[Close]

BLAST of Bhi10G000687 vs. NCBI nr
Match: KAF8397027.1 (hypothetical protein HHK36_018665 [Tetracentron sinense])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTDTS 65
           + H +Y++N+NKAL+QL+ AMA+G SS  V+LQ AI+FNGGG      INH + + + S
Sbjct: 63  KHHQAYITNYNKALEQLEEAMAKGDSSTVVKLQSAIKFNGGG-----HINHSVFWKNLS 116

[Close]

BLAST of Bhi10G000687 vs. NCBI nr
Match: AKN50600.1 (superoxide dismutase [Ziziphus jujuba])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++NFNKAL+QLDPA+A+G ++  V+LQ AI+FNGGG      INH I +
Sbjct: 59  KHHQTYITNFNKALEQLDPAIAKGDATAVVKLQSAIKFNGGG-----HINHSIFW 108

[Close]

BLAST of Bhi10G000687 vs. NCBI nr
Match: XP_021903949.1 (superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903950.1 superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903951.1 superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903953.1 superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903954.1 superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903955.1 superoxide dismutase [Mn], mitochondrial-like [Carica papaya])

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTDTS 65
           + H +Y++NFNKAL+QLD A+A G SS+ V+LQ  I+FNGGG      INH I + + S
Sbjct: 57  KHHKTYVTNFNKALEQLDAALANGDSSSVVRLQNDIKFNGGG-----HINHSIFWKNLS 110

[Close]

BLAST of Bhi10G000687 vs. NCBI nr
Match: XP_030505574.1 (superoxide dismutase [Mn], mitochondrial [Cannabis sativa])

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTD 63
           + H +Y++N+NKAL+QLD AMA+G +S  V+LQ AI+FNGGG      INH I + +
Sbjct: 57  KHHQTYITNYNKALEQLDQAMAKGDASTVVKLQSAIKFNGGG-----HINHSIFWNN 108

[Close]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL
Match: A0A1C6ZZ30 (Superoxide dismutase OS=Ziziphus jujuba OX=326968 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++NFNKAL+QLDPA+A+G ++  V+LQ AI+FNGGG      INH I +
Sbjct: 59  KHHQTYITNFNKALEQLDPAIAKGDATAVVKLQSAIKFNGGG-----HINHSIFW 108

[Close]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL
Match: A0A6A1VXD4 (Superoxide dismutase OS=Morella rubra OX=262757 GN=CJ030_MR3G002748 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + H +Y++NFNKAL+QLD AMA+G S+  V+LQ AI+FNGGG      INH I +
Sbjct: 52  KHHQAYITNFNKALEQLDEAMAKGDSTAVVKLQSAIKFNGGG-----HINHSIFW 101

[Close]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL
Match: A0A088MAG2 (Superoxide dismutase OS=Miscanthus x giganteus OX=183674 GN=MnSOD1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILF 61
           + HA+Y++N+NKAL+QLD A+A+G +S  VQLQ AI+FNGGG      +NH I +
Sbjct: 60  KHHATYVANYNKALEQLDAAVAKGDASAVVQLQSAIKFNGGG-----HVNHSIFW 109

[Close]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL
Match: A0A5J5AU31 (Superoxide dismutase OS=Nyssa sinensis OX=561372 GN=F0562_031497 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINH 57
           + H +Y++N+NKAL+QLD AMA+G SS  V+LQ AI+FNGGG      INH
Sbjct: 55  KHHQTYVTNYNKALEQLDDAMAKGDSSTVVKLQNAIKFNGGG-----HINH 100

[Close]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL
Match: A0A7J6FXY1 (Superoxide dismutase OS=Cannabis sativa OX=3483 GN=G4B88_015131 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 6   RDHASYLSNFNKALDQLDPAMAEGRSSNAVQLQRAIRFNGGGTAFYLEINHIILFTD 63
           + H +Y++N+NKAL+QLD AMA+G +S  V+LQ AI+FNGGG      INH I + +
Sbjct: 81  KHHQTYITNYNKALEQLDQAMAKGDASTVVKLQSAIKFNGGG-----HINHSIFWNN 132

The following BLAST results are available for this feature:

BLAST of Bhi10G000687 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10920.1	5.7e-08	45.45	manganese superoxide dismutase 1	[more]
AT3G10920.2	5.7e-08	45.45	manganese superoxide dismutase 1	[more]
AT3G56350.1	6.3e-07	43.64	Iron/manganese superoxide dismutase family protein	[more]

BLAST of Bhi10G000687 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41980	1.1e-08	52.73	Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays OX=4577 GN=SODA.3 PE=2 ...	[more]
P09233	4.3e-08	49.09	Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays OX=4577 GN=SODA.4 PE=2 ...	[more]
Q43008	9.5e-08	47.37	Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P41979	2.1e-07	47.27	Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays OX=4577 GN=SODA.2 PE=2 ...	[more]
P41978	3.6e-07	49.09	Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays OX=4577 GN=SODA.1 PE=2 ...	[more]

BLAST of Bhi10G000687 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8397121.1	2.9e-06	54.55	hypothetical protein HHK36_016028 [Tetracentron sinense]	[more]
KAF8397027.1	3.8e-06	49.15	hypothetical protein HHK36_018665 [Tetracentron sinense]	[more]
AKN50600.1	3.8e-06	52.73	superoxide dismutase [Ziziphus jujuba]	[more]
XP_021903949.1	5.0e-06	50.85	superoxide dismutase [Mn], mitochondrial-like [Carica papaya] >XP_021903950.1 su...	[more]
XP_030505574.1	5.0e-06	50.88	superoxide dismutase [Mn], mitochondrial [Cannabis sativa]	[more]

BLAST of Bhi10G000687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1C6ZZ30	1.9e-06	52.73	Superoxide dismutase OS=Ziziphus jujuba OX=326968 PE=2 SV=1	[more]
A0A6A1VXD4	2.4e-06	54.55	Superoxide dismutase OS=Morella rubra OX=262757 GN=CJ030_MR3G002748 PE=3 SV=1	[more]
A0A088MAG2	2.4e-06	52.73	Superoxide dismutase OS=Miscanthus x giganteus OX=183674 GN=MnSOD1 PE=2 SV=1	[more]
A0A5J5AU31	2.4e-06	56.86	Superoxide dismutase OS=Nyssa sinensis OX=561372 GN=F0562_031497 PE=3 SV=1	[more]
A0A7J6FXY1	2.4e-06	50.88	Superoxide dismutase OS=Cannabis sativa OX=3483 GN=G4B88_015131 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019831	Manganese/iron superoxide dismutase, N-terminal	PFAM	PF00081	Sod_Fe_N	coord: 7..49 e-value: 3.3E-5 score: 24.3
IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	GENE3D	1.10.287.990	Fe,Mn superoxide dismutase (SOD) domain	coord: 1..61 e-value: 5.6E-8 score: 35.3
IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	SUPERFAMILY	46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain	coord: 7..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000687	Bhi10M000687	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity