Bhi10G000244 (gene) Wax gourd (B227) v1

Overview
NameBhi10G000244
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionBP28CT domain-containing protein
Locationchr10: 6957057 .. 6957232 (+)
RNA-Seq ExpressionBhi10G000244
SyntenyBhi10G000244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAATGTGAAGATTTTGTTGGCAGTGTGGCAGATATGAAGAAAAAAAAGAAGTCTATCGAGTACCATACATCTAGCTCGCCCTATGTTATGATTTGTAAAGAAAAGAACTCATTCTCATTATTAAGCTCTGTTCTTGATATTCTACTCTTGAAGAAAGACATAGCTAACAG

mRNA sequence

ATGTTGAAATGTGAAGATTTTGTTGGCAGTGTGGCAGATATGAAGAAAAAAAAGAAGTCTATCGAGTACCATACATCTAGCTCGCCCTATGTTATGATTTGTAAAGAAAAGAACTCATTCTCATTATTAAGCTCTGTTCTTGATATTCTACTCTTGAAGAAAGACATAGCTAACAG

Coding sequence (CDS)

ATGTTGAAATGTGAAGATTTTGTTGGCAGTGTGGCAGATATGAAGAAAAAAAAGAAGTCTATCGAGTACCATACATCTAGCTCGCCCTATGTTATGATTTGTAAAGAAAAGAACTCATTCTCATTATTAAGCTCTGTTCTTGATATTCTACTCTTGAAGAAAGACATAGCTAACAG

Protein sequence

MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN
Homology
[Close]
BLAST of Bhi10G000244 vs. NCBI nr
Match: XP_011653080.1 (uncharacterized protein At3g06530 [Cucumis sativus] >KGN53163.1 hypothetical protein Csa_014610 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLK E FVGSV D KKKKKSIEYHTSSSPY MICK++NSFS LSSVLDILLLKKDIAN
Sbjct: 1144 MLKSEGFVGSVVDRKKKKKSIEYHTSSSPYDMICKKENSFSSLSSVLDILLLKKDIAN 1201

[Close]
BLAST of Bhi10G000244 vs. NCBI nr
Match: KAA0044669.1 (hypothetical protein E6C27_scaffold46G004250 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLK E FVGSV D KKKKKSIEYHTSSSPY MICK++NSFS LSSVLDILLLKKDIAN
Sbjct: 1144 MLKSEGFVGSVVDRKKKKKSIEYHTSSSPYDMICKKENSFSSLSSVLDILLLKKDIAN 1201

[Close]
BLAST of Bhi10G000244 vs. NCBI nr
Match: KAG7030854.1 (hypothetical protein SDJN02_04891 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 3.0e-15
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLKCE FVGS+ D KKKKKS+EYH S+SPY MICK++N+FS LSSVLDILLLKKD+AN
Sbjct: 1144 MLKCEGFVGSLVDRKKKKKSLEYHASNSPYDMICKKENTFSFLSSVLDILLLKKDMAN 1201

[Close]
BLAST of Bhi10G000244 vs. NCBI nr
Match: XP_023533004.1 (uncharacterized protein At3g06530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 3.0e-15
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLKCE FVGS+ D KKKKKS+EYH S+SPY MICK++N+FS LSSVLDILLLKKD+AN
Sbjct: 1144 MLKCEGFVGSLVDRKKKKKSLEYHASNSPYDMICKKENTFSFLSSVLDILLLKKDMAN 1201

[Close]
BLAST of Bhi10G000244 vs. NCBI nr
Match: KAG6600193.1 (hypothetical protein SDJN03_05426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 3.0e-15
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLKCE FVGS+ D KKKKKS+EYH S+SPY MICK++N+FS LSSVLDILLLKKD+AN
Sbjct: 1144 MLKCEGFVGSLVDRKKKKKSLEYHASNSPYDMICKKENTFSFLSSVLDILLLKKDMAN 1201

[Close]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match: A0A5A7TTV7 (BP28CT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004250 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLK E FVGSV D KKKKKSIEYHTSSSPY MICK++NSFS LSSVLDILLLKKDIAN
Sbjct: 1144 MLKSEGFVGSVVDRKKKKKSIEYHTSSSPYDMICKKENSFSSLSSVLDILLLKKDIAN 1201

[Close]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match: A0A0A0KUD6 (BP28CT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G022980 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLK E FVGSV D KKKKKSIEYHTSSSPY MICK++NSFS LSSVLDILLLKKDIAN
Sbjct: 1144 MLKSEGFVGSVVDRKKKKKSIEYHTSSSPYDMICKKENSFSSLSSVLDILLLKKDIAN 1201

[Close]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match: A0A6J1IFT2 (uncharacterized protein At3g06530 OS=Cucurbita maxima OX=3661 GN=LOC111476556 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-15
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            MLKCE FVGS+ D KKKKKS+EYH S+SPY MIC+++N+FS LSSVLDILLLKKD+AN
Sbjct: 1144 MLKCEGFVGSLVDRKKKKKSLEYHASNSPYDMICRKENTFSFLSSVLDILLLKKDMAN 1201

[Close]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match: A0A6J1FWC5 (uncharacterized protein At3g06530 OS=Cucurbita moschata OX=3662 GN=LOC111447932 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            +LKCE FVGS+ D KKKKKS+EYH S+SPY MICK++N+FS LSSVLDILLLKKD+AN
Sbjct: 1144 VLKCEGFVGSLVDRKKKKKSLEYHASNSPYDMICKKENTFSFLSSVLDILLLKKDMAN 1201

[Close]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match: A0A6J1CJT0 (uncharacterized protein At3g06530 OS=Momordica charantia OX=3673 GN=LOC111011660 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-15
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 1    MLKCEDFVGSVADMKKKKKSIEYHTSSSPYVMICKEKNSFSLLSSVLDILLLKKDIAN 59
            M+KCE FVG+  D KKKKKSIEYH SSSPY MI K++NSFSLLSSVLDILLLKKD+AN
Sbjct: 1141 MMKCESFVGNSVDRKKKKKSIEYHISSSPYDMISKKENSFSLLSSVLDILLLKKDMAN 1198

The following BLAST results are available for this feature:
BLAST of Bhi10G000244 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi10G000244 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi10G000244 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653080.14.6e-1686.21uncharacterized protein At3g06530 [Cucumis sativus] >KGN53163.1 hypothetical pro... [more]
KAA0044669.14.6e-1686.21hypothetical protein E6C27_scaffold46G004250 [Cucumis melo var. makuwa][more]
KAG7030854.13.0e-1577.59hypothetical protein SDJN02_04891 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023533004.13.0e-1577.59uncharacterized protein At3g06530 [Cucurbita pepo subsp. pepo][more]
KAG6600193.13.0e-1577.59hypothetical protein SDJN03_05426, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Bhi10G000244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TTV72.2e-1686.21BP28CT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A0A0KUD62.2e-1686.21BP28CT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G022980 PE=3... [more]
A0A6J1IFT23.2e-1575.86uncharacterized protein At3g06530 OS=Cucurbita maxima OX=3661 GN=LOC111476556 PE... [more]
A0A6J1FWC54.2e-1575.86uncharacterized protein At3g06530 OS=Cucurbita moschata OX=3662 GN=LOC111447932 ... [more]
A0A6J1CJT07.2e-1579.31uncharacterized protein At3g06530 OS=Momordica charantia OX=3673 GN=LOC111011660... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi10M000244Bhi10M000244mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0045943 positive regulation of transcription by RNA polymerase I
cellular_component GO:0030686 90S preribosome
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0034455 t-UTP complex
molecular_function GO:0030515 snoRNA binding