Bhi10G000118 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G000118
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 3261026 .. 3265643 (-)
RNA-Seq Expression	Bhi10G000118
Synteny	Bhi10G000118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTACAAGGAAGGAAGAAAGAAAAAAAACAGGCCAAATTGTTAGCCTTCACCTGCATTTGCACCTACACCTTCAGCTTTGCTTTTTTCTGCCTGCAGAAAACAAGGCCATTGAGGTGCAGGTGCTTCTGCAAGTGAATGCCATCTTGGCGCTCTCCTCCGCCGCCGTCGTCGTCGTCGCCGCCATCTCCTCTCAATAGGTTTTTTTTTCTTTTTTGTTCATTCTTCTTCTTTTTAAAGGTAAACCCTTTTTTTTTTCTTCAAGATATATGGCTGTATTTACCTGAAGATCCAGAGATCTTGACATTTCATTATTCTTGTCTCACCATGCATCTACACTTCTGAAATTTTTCACCTTTTAAAAAGCTTTTTTAGATATATTCACATGCAGATATAATTTAATTATATTTATGTTGTGAGGTTTTTATTTACAATTAATTTTAGTTTATTTAAAAGAATTTTAGAGAAGATTATAAGCTAAGCTACGGTTAAAGATTGGAATAATGTGAAATGTAAACAAAAGTTTAATTGAACAGTGTCAGCCCTAATTTTTCTTACCTTTGTTTTTTTCGGAACATGTTAAAAATGGTTCATTAGGAAAATTTTATTAAAAAAAGACCTAAAAAGTAATCCTCATACAATTATTAAAACAATTGATAAAGATAGCCCATGCAATCATAACATATAATTTAAGGAGATTATTGGTGGGAGAGAAAAAACATTTCAAATTTTATTATTTAGTTAATAAAAACCTGGATTTTTCAATCATCATATAATTAACGTAGTCATTGATGGTAAATTAGTTTGACATCTTGGCTTTTTAATTTGAAGGGAAAAGTTCAAATTAACGTGAACAAAGTTAGATATGACATAGAAATATAGGATCTGATGGAATAAAATTATTAAATTAACAAATAATGCTAAAGATTGTTCTATTGCATTTTTTTTTTTTGTAAATCAAAGTCTCCTCTTCACTTTCTGATGAATTACCTTTCATGTTTTGTCCTTTGATTCAAGCTGATTAGAATATAAATTTGGATGGGGAACAATAAAGTTTCTATTTATCCAGAAAATTAGATTCACTAAGCATGTTTAATGTTCAAGAGAGTAGGTGTACTTTGCTCACAATTATGTCCTTTTTTTTAGTACAATTGAAGTAGAAAAATTTACCAGCATACATCGGTTCACTTCACAATTGTTAATACGTTTTGAGATTTAACGATCTTTGTTTAAATTTATATGGAAACTAAGTCAGAGAAGCATGAATTTAGTATGGCTTATATTTTGGTTTGGAAGGAAAAGGTTGTCCATAAATGATGTGTTTCAATATGTTTAGCTATGGATTAATAAATTAATCGATAATTAGTATGAGAAGTCCTACAGAGAAGGCTGAAAATTAAAAGTGATAAGATTACCATTTACCAATAAATTATATGCTTATGGTAGAGTAATCTAATCCATTATATTAAAAAATTTTATTCTTACTACTTCTTGAAACTTGTTTGGGACTGATTTAAATTCAGAGCTGTGTTAATTAATTTATTTATTTTGAAACTTTGTGATTCGTTAATATTGAAGGAGCGAATGTTTTTGTATGGATTGGAATTGTTCCACATTGATTTTCACGTAGTATGATTTATTTGATGAGATAACATGAGATTTCATCTCAAAATTCCTTATATTTTTTAGTGTGAACTATTATTTGCTAATTATTCTAGAAATAGAAGTTCACCTACCAGTATTTTGGATTATTTATAATTAAGGTTTGTTTTCTATTGAAAATTAATTTTGAGTGAGATTTGTTTTTCTTTATGAGGGAATATTCTGTTTGAGTAGGCAAATAATTCTACTACTCGACTTCACTATCATAAGTGCTTCATGTTAGTCATATTTAAATAATAATATGTTTAATTAAAGTATGAATTATGTATTTTGATTAATAATTTATGTAATTTTATTAGATTGGGTCCTATTATGTGATCTAATCAATTAAGGCCCTATGAACTTAATGGGTAGAAGCTCATTCCTAGTTAATTAGGGTTTAATTAGAACCCTAATTGAACTAGTAACTTAAATTATGGTCCCCCATATACCAAAACAATATAAGCACTCAGTCTTTCTTGAATCCCATCTAGAGAAATCCCACTAAGGACATTTGGAGTTTTGGTTGAGGATGACCATAGTCATCCATCATCATCTTAAAGCTATCATCAATTTTGCAATGGAATCCGGTATGTTATTCTTGGCAATTTGACATGAATGATCCTAGGGTGTATCTATTCAATATAGATATAAAGAATTTATGCTAACAATTGGTATCAGAGCCTGAATTTCATATTGGATTGTTGGTTTAAATTTATTTTCCATTGTTTTTTTTTTTTAATTTTGGTTTCAGTAAAGAACTTATAGAATCTTTAATTCTTTAAATCTTGGTTTCATCGGCGGGATAAAGTAATTTTGGTTTAAAGAATTCAAAGATTTTAAGTATTTTTTTATTTTGTCGGCTGTGCGTGCGTGGGTTTCACAACAATTGTCGCCTGCCAATAGCTTTTTTAATTCAAGGAATTTGGTGGTCTGAAAGTTTTTTTTAATTAATTGTTCTTGCCGACTTCAGAAGTCCAAGTGATTTCTTGTTTCCTCACTGCAACTCAATGTTATAACTATTTTGCTTTCAGTATGGTTTTGGTGACCACTACTTGATCTGAAGCTAAAATTATGTATTTTCTTTTAATAATTAGTTTGATTTATTGCATCCACTTGCAATTTAATGGGTATCTGAATAATCATTTGTAGATCTAATTTAAATTAGCATATTGATGATTTAAGGTTAAATTTGATTAATCATGTTGGGGATTTAAGTTTAATTGATCATGTTGTGGATTAAGTTTAAATATGATTGATTATTTGACGATATTCACATGTTTGTGTTGCTTTAGTTATATTATGTGTATGCAATTATTAAGTGAATATTAGAAAAGACTATTTGGTGTCTTCCTCTTTTATTTTTATACAATAATATTATTATATTATTGTATCTTATATTTTAGATTGAGTTGGTCAAAATAATATGTTACCAAAGTAGCCTGATATCTAGATTAATTTAATTCTAAAATATAAGATGTGCATATTCATGAATTTATGCGGATAATTATCGGCCCAAAGGAAGATAATTATTCAGCCAAATTGTGGGTATGCATGTGGCAATGAGTATGTGACAATTATAAGAATTGCTCATGTGAAAAATAGTCGGTCCAAAGAAAGGCGATTTTTTGAGTTAATTGTTAGTACTTTGATTATTACGTTGAGTGTACCATTTACCGTTGGTGTTTTTGCCCAAAGACAAAACATCAATGTTGTGTTAGGTATCTTGTTAAAGGGGCCCACCACATATGTGAAATTATTTTGTTATATTTTAATTGTGAGCATATGTTTTGTTGTTTATTGTGAGTTCAATCCCTAAGTTGAATGGATCGAATTTCAAGATTTGGAAAGAGAGCCTAGAGATACTTCTTGGGTGTATGGATTTGGACCTTGCATTAAGGACCGATAAACCTACTTCTACTGAGGAACAACCAAATATGGCTAATATAGAGAAGTGGGAACGGTCAAATCGTATGTGTCTGATGACCATTAGGCACTCAATTTCGAAGTCTTTTCGGGGCTCTATCACAGAAAGTGAAAATGCCAATAAGTTTCTTGCTTAAATTGAGAAATATTTTGCTAAAAATAAGAAAGGGGAATCAAGTAGTCTTTTTTACTTAACTTCTATGAGGTATAAGAGCAATGGAAACATAAGGGAGTACATTATGGAAATGTCCAATCTCACAGGTAAATTAAAGGCACTTGATATCGAGATAAATGAAAATTTACTCGTGCATCTGGTACTTATCTCTCTTCCTGCACAATTCACTCAGTTTAAGATAAGCTATAATACTCAGAATGATAAATGGAGTATTAATGAGTTTATCTCACAATGTGTGCAAAAAGAAGATAGGATTAAGAGAGAAATGACAGAAAGTACTCATTTGGCAACATGCTCTCGTGATAAAAAGAAAAGAAAAATTGTGGATGCTGCAGAAAGGACATCTCACCAGAATAAAAACAAGAAACAAGCTACTGAAAATCCTTGTTTTTTCTGCAAAAGGAAAGGTCACTTCAAGAAAAATTGTCCCAAATACGCCAAATGGCGTGTAAAAAAGGGTAAACTTCTTACTTTGGTTTTTTTTGAAGTTAATTTAGCTTCTGTACCTACAGATACTTGGTGGGTAGATTCTGGTGCTACTACTCACATAAGTATATTAATGCAGGGTTGTTTGTGGAGCCGGCCGCCAAGTGATACTGAAAGATTCATCTATGTGGGCGATGGCAAAGCAGTTCCAATTGAAGCTATTGGAAATTTTAGACTACTTTTAAAAACTAGTTGTTATTTGGATCTGAATGAGAATTTGTTGTACCGTCATTTAGACGAAATTTAGTTTCTATTTTTCGTTTGGACAGATTTGGTTTTTCTTGTTCTTTTAGAAATAATAGAGTTAGTCTTTTTCAAGATTCTAAGCTTATTGGTACCGACTCTTTAATTGATAATCTATATATGCTTGATTCTTTTGCTTCATTTAACAA

mRNA sequence

TCTACAAGGAAGGAAGAAAGAAAAAAAACAGGCCAAATTGTTAGCCTTCACCTGCATTTGCACCTACACCTTCAGCTTTGCTTTTTTCTGCCTGCAGAAAACAAGGCCATTGAGGTGCAGGTGCTTCTGCAAGTGAATGCCATCTTGGCGCTCTCCTCCGCCGCCGTCGTCGTCGTCGCCGCCATCTCCTCTCAATAGGTTTTTTTTTCTTTTTTGTTCATTCTTCTTCTTTTTAAAGGTAAACCCTTTTTTTTTTCTTCAAGATATATGGCTGTATTTACCTGAAGATCCAGAGATCTTGACATTTCATTATTCTTGTCTCACCATGCATCTACACTTCTGAAATTTTTCACCTTTTAAAAAGCTTTTTTAGATATATTCACATGCAGATATAATTTAATTATATTTATGTTGTGAGGTTTTTATTTACAATTAATTTTAGTTTATTTAAAAGAATTTTAGAGAAGATTATAAGCTAAGCTACGGTTAAAGATTGGAATAATGTGAAATGTAAACAAAAGTTTAATTGAACAGTGTCAGCCCTAATTTTTCTTACCTTTGTTTTTTTCGGAACATGTTAAAAATGGTTCATTAGGAAAATTTTATTAAAAAAAGACCTAAAAAGTAATCCTCATACAATTATTAAAACAATTGATAAAGATAGCCCATGCAATCATAACATATAATTTAAGGAGATTATTGGTGGGAGAGAAAAAACATTTCAAATTTTATTATTTAGTTAATAAAAACCTGGATTTTTCAATCATCATATAATTAACGTAGTCATTGATGGTAAATTAGTTTGACATCTTGGCTTTTTAATTTGAAGGGAAAAGTTCAAATTAACGTGAACAAAGTTAGATATGACATAGAAATATAGGATCTGATGGAATAAAATTATTAAATTAACAAATAATGCTAAAGATTGTTCTATTGCATTTTTTTTTTTTGTAAATCAAAGTCTCCTCTTCACTTTCTGATGAATTACCTTTCATGTTTTGTCCTTTGATTCAAGCTGATTAGAATATAAATTTGGATGGGGAACAATAAAGTTTCTATTTATCCAGAAAATTAGATTCACTAAGCATGTTTAATGTTCAAGAGAGTAGGTGTACTTTGCTCACAATTATGTCCTTTTTTTTAGTACAATTGAAGTAGAAAAATTTACCAGCATACATCGGTTCACTTCACAATTGTTAATACGTTTTGAGATTTAACGATCTTTGTTTAAATTTATATGGAAACTAAGTCAGAGAAGCATGAATTTAGTATGGCTTATATTTTGGTTTGGAAGGAAAAGGTTGTCCATAAATGATGTGTTTCAATATGTTTAGCTATGGATTAATAAATTAATCGATAATTAGTATGAGAAGTCCTACAGAGAAGGCTGAAAATTAAAAGTGATAAGATTACCATTTACCAATAAATTATATGCTTATGGTAGAGTAATCTAATCCATTATATTAAAAAATTTTATTCTTACTACTTCTTGAAACTTGTTTGGGACTGATTTAAATTCAGAGCTGTGTTAATTAATTTATTTATTTTGAAACTTTGTGATTCGTTAATATTGAAGGAGCGAATGTTTTTGTATGGATTGGAATTGTTCCACATTGATTTTCACGTAGTATGATTTATTTGATGAGATAACATGAGATTTCATCTCAAAATTCCTTATATTTTTTAGTGTGAACTATTATTTGCTAATTATTCTAGAAATAGAAGTTCACCTACCAGTATTTTGGATTATTTATAATTAAGGTTTGTTTTCTATTGAAAATTAATTTTGAGTGAGATTTGTTTTTCTTTATGAGGGAATATTCTGTTTGAGTAGGCAAATAATTCTACTACTCGACTTCACTATCATAAGTGCTTCATGTTAGTCATATTTAAATAATAATATGTTTAATTAAAGTATGAATTATGTATTTTGATTAATAATTTATGTAATTTTATTAGATTGGGTCCTATTATGTGATCTAATCAATTAAGGCCCTATGAACTTAATGGGTAGAAGCTCATTCCTAGTTAATTAGGGTTTAATTAGAACCCTAATTGAACTAGTAACTTAAATTATGGTCCCCCATATACCAAAACAATATAAGCACTCAGTCTTTCTTGAATCCCATCTAGAGAAATCCCACTAAGGACATTTGGAGTTTTGGTTGAGGATGACCATAGTCATCCATCATCATCTTAAAGCTATCATCAATTTTGCAATGGAATCCGGTATGTTATTCTTGGCAATTTGACATGAATGATCCTAGGGTGTATCTATTCAATATAGATATAAAGAATTTATGCTAACAATTGGTATCAGAGCCTGAATTTCATATTGGATTGTTGGTTTAAATTTATTTTCCATTGTTTTTTTTTTTTAATTTTGGTTTCAGTAAAGAACTTATAGAATCTTTAATTCTTTAAATCTTGGTTTCATCGGCGGGATAAAGTAATTTTGGTTTAAAGAATTCAAAGATTTTAAGTATTTTTTTATTTTGTCGGCTGTGCGTGCGTGGGTTTCACAACAATTGTCGCCTGCCAATAGCTTTTTTAATTCAAGGAATTTGGTGGTCTGAAAGTTTTTTTTAATTAATTGTTCTTGCCGACTTCAGAAGTCCAAGTGATTTCTTGTTTCCTCACTGCAACTCAATGTTATAACTATTTTGCTTTCAGTATGGTTTTGGTGACCACTACTTGATCTGAAGCTAAAATTATGTATTTTCTTTTAATAATTAGTTTGATTTATTGCATCCACTTGCAATTTAATGGGTATCTGAATAATCATTTGTAGATCTAATTTAAATTAGCATATTGATGATTTAAGGTTAAATTTGATTAATCATGTTGGGGATTTAAGTTTAATTGATCATGTTGTGGATTAAGTTTAAATATGATTGATTATTTGACGATATTCACATGTTTGTGTTGCTTTAGTTATATTATGTGTATGCAATTATTAAGTGAATATTAGAAAAGACTATTTGGTGTCTTCCTCTTTTATTTTTATACAATAATATTATTATATTATTGTATCTTATATTTTAGATTGAGTTGGTCAAAATAATATGTTACCAAAGTAGCCTGATATCTAGATTAATTTAATTCTAAAATATAAGATGTGCATATTCATGAATTTATGCGGATAATTATCGGCCCAAAGGAAGATAATTATTCAGCCAAATTGTGGGTATGCATGTGGCAATGAGTATGTGACAATTATAAGAATTGCTCATGTGAAAAATAGTCGGTCCAAAGAAAGGCGATTTTTTGAGTTAATTGTTAGTACTTTGATTATTACGTTGAGTGTACCATTTACCGTTGGTGTTTTTGCCCAAAGACAAAACATCAATGTTGTGTTAGGTATCTTGTTAAAGGGGCCCACCACATATGTGAAATTATTTTGTTATATTTTAATTGTGAGCATATGTTTTGTTGTTTATTGTGAGTTCAATCCCTAAGTTGAATGGATCGAATTTCAAGATTTGGAAAGAGAGCCTAGAGATACTTCTTGGGTGTATGGATTTGGACCTTGCATTAAGGACCGATAAACCTACTTCTACTGAGGAACAACCAAATATGGCTAATATAGAGAAGTGGGAACGGTCAAATCGTATGTGTCTGATGACCATTAGGCACTCAATTTCGAAGTCTTTTCGGGGCTCTATCACAGAAAGTGAAAATGCCAATAAGTTTCTTGCTTAAATTGAGAAATATTTTGCTAAAAATAAGAAAGGGGAATCAAGTAGTCTTTTTTACTTAACTTCTATGAGGTATAAGAGCAATGGAAACATAAGGGAGTACATTATGGAAATGTCCAATCTCACAGGTAAATTAAAGGCACTTGATATCGAGATAAATGAAAATTTACTCGTGCATCTGGTACTTATCTCTCTTCCTGCACAATTCACTCAGTTTAAGATAAGCTATAATACTCAGAATGATAAATGGAGTATTAATGAGTTTATCTCACAATGTGTGCAAAAAGAAGATAGGATTAAGAGAGAAATGACAGAAAGTACTCATTTGGCAACATGCTCTCGTGATAAAAAGAAAAGAAAAATTGTGGATGCTGCAGAAAGGACATCTCACCAGAATAAAAACAAGAAACAAGCTACTGAAAATCCTTGTTTTTTCTGCAAAAGGAAAGGTCACTTCAAGAAAAATTGTCCCAAATACGCCAAATGGCGTGTAAAAAAGGGGTTGTTTGTGGAGCCGGCCGCCAAGTGATACTGAAAGATTCATCTATGTGGGCGATGGCAAAGCAGTTCCAATTGAAGCTATTGGAAATTTTAGACTACTTTTAAAAACTAGTTGTTATTTGGATCTGAATGAGAATTTGTTGTACCGTCATTTAGACGAAATTTAGTTTCTATTTTTCGTTTGGACAGATTTGGTTTTTCTTGTTCTTTTAGAAATAATAGAGTTAGTCTTTTTCAAGATTCTAAGCTTATTGGTACCGACTCTTTAATTGATAATCTATATATGCTTGATTCTTTTGCTTCATTTAACAA

Coding sequence (CDS)

ATGAGGTATAAGAGCAATGGAAACATAAGGGAGTACATTATGGAAATGTCCAATCTCACAGGTAAATTAAAGGCACTTGATATCGAGATAAATGAAAATTTACTCGTGCATCTGGTACTTATCTCTCTTCCTGCACAATTCACTCAGTTTAAGATAAGCTATAATACTCAGAATGATAAATGGAGTATTAATGAGTTTATCTCACAATGTGTGCAAAAAGAAGATAGGATTAAGAGAGAAATGACAGAAAGTACTCATTTGGCAACATGCTCTCGTGATAAAAAGAAAAGAAAAATTGTGGATGCTGCAGAAAGGACATCTCACCAGAATAAAAACAAGAAACAAGCTACTGAAAATCCTTGTTTTTTCTGCAAAAGGAAAGGTCACTTCAAGAAAAATTGTCCCAAATACGCCAAATGGCGTGTAAAAAAGGGGTTGTTTGTGGAGCCGGCCGCCAAGTGA

Protein sequence

MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDKWSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENPCFFCKRKGHFKKNCPKYAKWRVKKGLFVEPAAK

Homology

[Close]

BLAST of Bhi10G000118 vs. NCBI nr
Match: KAA0055452.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08934.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 6.0e-55
Identity = 117/145 (80.69%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK NGNIR YIM+MSNL GKLKALDIEINENLLVHL+LISLPAQFTQFKISYNTQ DK
Sbjct: 1   MRYKGNGNIRVYIMKMSNLAGKLKALDIEINENLLVHLILISLPAQFTQFKISYNTQKDK 60

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           WSINE ISQCVQ+E RIKREM E+ HLAT    KKKRK  DA E TS Q  NKKQA +NP
Sbjct: 61  WSINELISQCVQEEYRIKREMIENVHLATNFHGKKKRKPTDAVEGTSQQ--NKKQAMKNP 120

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKG 146
           CFF K+KGH KKNCPKYAKWRVKKG
Sbjct: 121 CFFYKKKGHIKKNCPKYAKWRVKKG 143

[Close]

BLAST of Bhi10G000118 vs. NCBI nr
Match: KYP39716.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 95/148 (64.19%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS Q K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQQKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

[Close]

BLAST of Bhi10G000118 vs. NCBI nr
Match: KYP35727.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-45
Identity = 94/148 (63.51%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS   K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQLKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

[Close]

BLAST of Bhi10G000118 vs. NCBI nr
Match: KYP49135.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNI+EYIMEMSNL  KLKAL +E++ +LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIKEYIMEMSNLVSKLKALKLELSNDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS Q K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQQKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKG 146
           CFFCK+ GH KK CPKYA WRVKKG
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKG 249

[Close]

BLAST of Bhi10G000118 vs. NCBI nr
Match: KYP69815.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-43
Identity = 93/148 (62.84%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+ YNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVIYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R  RE TES HLA+ S+++K++   D  ERTS   K KK      
Sbjct: 165 WTLNELISHCVQEEERQLREKTESAHLASSSQNRKRKNNKDDVERTSQLKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

[Close]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL
Match: A0A5D3CCH9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00220 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.9e-55
Identity = 117/145 (80.69%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK NGNIR YIM+MSNL GKLKALDIEINENLLVHL+LISLPAQFTQFKISYNTQ DK
Sbjct: 1   MRYKGNGNIRVYIMKMSNLAGKLKALDIEINENLLVHLILISLPAQFTQFKISYNTQKDK 60

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           WSINE ISQCVQ+E RIKREM E+ HLAT    KKKRK  DA E TS Q  NKKQA +NP
Sbjct: 61  WSINELISQCVQEEYRIKREMIENVHLATNFHGKKKRKPTDAVEGTSQQ--NKKQAMKNP 120

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKG 146
           CFF K+KGH KKNCPKYAKWRVKKG
Sbjct: 121 CFFYKKKGHIKKNCPKYAKWRVKKG 143

[Close]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL
Match: A0A151RB35 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_038971 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.5e-46
Identity = 95/148 (64.19%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS Q K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQQKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

[Close]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL
Match: A0A151QZJ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_043224 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.6e-45
Identity = 94/148 (63.51%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS   K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQLKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

[Close]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL
Match: A0A151S2S4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_029167 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.0e-44
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNI+EYIMEMSNL  KLKAL +E++ +LLVHLVLISLP  F QFK+SYNTQ DK
Sbjct: 105 MRYKGKGNIKEYIMEMSNLVSKLKALKLELSNDLLVHLVLISLPTHFGQFKVSYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R +RE TES HLA+ S+++K++   D  ERTS Q K KK      
Sbjct: 165 WTLNELISHCVQEEERQQREKTESAHLASSSQNRKRKNNKDVVERTSQQKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKG 146
           CFFCK+ GH KK CPKYA WRVKKG
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKG 249

[Close]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL
Match: A0A151TRZ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_009021 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.7e-44
Identity = 93/148 (62.84%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 1   MRYKSNGNIREYIMEMSNLTGKLKALDIEINENLLVHLVLISLPAQFTQFKISYNTQNDK 60
           MRYK  GNIREYIMEMSNL  KLKAL +E++++LLVHLVLISLP  F QFK+ YNTQ DK
Sbjct: 105 MRYKGKGNIREYIMEMSNLASKLKALKLELSDDLLVHLVLISLPTHFGQFKVIYNTQKDK 164

Query: 61  WSINEFISQCVQKEDRIKREMTESTHLATCSRDKKKRKIVDAAERTSHQNKNKKQATENP 120
           W++NE IS CVQ+E+R  RE TES HLA+ S+++K++   D  ERTS   K KK      
Sbjct: 165 WTLNELISHCVQEEERQLREKTESAHLASSSQNRKRKNNKDDVERTSQLKKVKKDENTPT 224

Query: 121 CFFCKRKGHFKKNCPKYAKWRVKKGLFV 149
           CFFCK+ GH KK CPKYA WRVKKG F+
Sbjct: 225 CFFCKKPGHMKKECPKYASWRVKKGNFL 252

The following BLAST results are available for this feature:

BLAST of Bhi10G000118 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G000118 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G000118 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055452.1	6.0e-55	80.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KYP39716.1	1.1e-45	64.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP35727.1	7.3e-45	63.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP49135.1	2.1e-44	64.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP69815.1	1.4e-43	62.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

BLAST of Bhi10G000118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCH9	2.9e-55	80.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A151RB35	5.5e-46	64.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151QZJ9	3.6e-45	63.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151S2S4	1.0e-44	64.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151TRZ9	6.7e-44	62.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..78 e-value: 1.6E-11 score: 44.1
None	No IPR available	GENE3D	4.10.60.10		coord: 90..144 e-value: 2.0E-5 score: 26.4
None	No IPR available	PANTHER	PTHR35317:SF3	TRANSMEMBRANE PROTEIN	coord: 1..97
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..97
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 120..136 e-value: 3.9E-4 score: 20.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 121..136 score: 9.372511
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 106..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000118	Bhi10M000118	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding