Bhi10G000061 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G000061
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein ROS1-like isoform X1
Location	chr10: 1973187 .. 1974014 (-)
RNA-Seq Expression	Bhi10G000061
Synteny	Bhi10G000061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGAAGATGCTGCAACTTAGCTTCATTATTAGAACTTCCAGTTTGTAATCAATTGCCAAGAAACTTCCATGAACATGTCGTCGAGAGAGAAAAAACAGAAAATTTTAATGGGAATGACATTGTTCCTATTGTAGGGTGGCAGATACAGAGACCGCGGAATCAACAGAAATCTCAAGCCAGTTCAAATTGTAGCAGTAGAGGTAATCTATTCTAAGGTTCTAGATCATATTGCACTTTAGATTTTAAATGCCTGAATAAATTTTTTTATGATATTTCAGATGGTGATGGGGGCACAAAAGTAGAAGAGCTTGCTTGTCAATCTCCCATTGATTTAAAGGCTAATGGGAGAGATACATATGTAGGAACTGCCATAACAAATGGTAATTTCCTTTTAGGTTAAGTATTTTTTACGATTAGATTTCATTTGTCTGTTGGGTCTTGAATGCAACAAGATTATGGCTTTTGTAGTGTAATGTAGCCCTTTTTATTTTTCCAGTCAATAGGGAAGAAACACTAACGAGAAGATTGGCTCAAACATCACTCTCTCAAGCTAATGGGAGAGAGGCATCTATAGGAACTGCCTTAACAGATGGTAATTTCTTTTTAGCTTTAGTATTTTTGACAATTTGAAATATTATATATATTTCGTTTGCCTGTTGCGTCATGAATGCAACAAGGTTATGACTCTTGTAGAATGTAATATAAAACTTTGTATTTTTTTTTACAGCCAATAAGGAAGAAACACTAACAAAAAGATTGGTTCAAATATCACTCTCTCAAGCTAATGGGAGAGCGACATCTATAGGAATTGTCTTAACGGATG

mRNA sequence

ATGGTTAGAAGATGCTGCAACTTAGCTTCATTATTAGAACTTCCAGTTTGTAATCAATTGCCAAGAAACTTCCATGAACATGTCGTCGAGAGAGAAAAAACAGAAAATTTTAATGGGAATGACATTGTTCCTATTGTAGGGTGGCAGATACAGAGACCGCGGAATCAACAGAAATCTCAAGCCAGTTCAAATTGTAGCAGTAGAGATGGTGATGGGGGCACAAAAGTAGAAGAGCTTGCTTGTCAATCTCCCATTGATTTAAAGGCTAATGGGAGAGATACATATGTAGGAACTGCCATAACAAATGTCAATAGGGAAGAAACACTAACGAGAAGATTGGCTCAAACATCACTCTCTCAAGCTAATGGGAGAGAGGCATCTATAGGAACTGCCTTAACAGATGCCAATAAGGAAGAAACACTAACAAAAAGATTGGTTCAAATATCACTCTCTCAAGCTAATGGGAGAGCGACATCTATAGGAATTGTCTTAACGGATG

Coding sequence (CDS)

ATGGTTAGAAGATGCTGCAACTTAGCTTCATTATTAGAACTTCCAGTTTGTAATCAATTGCCAAGAAACTTCCATGAACATGTCGTCGAGAGAGAAAAAACAGAAAATTTTAATGGGAATGACATTGTTCCTATTGTAGGGTGGCAGATACAGAGACCGCGGAATCAACAGAAATCTCAAGCCAGTTCAAATTGTAGCAGTAGAGATGGTGATGGGGGCACAAAAGTAGAAGAGCTTGCTTGTCAATCTCCCATTGATTTAAAGGCTAATGGGAGAGATACATATGTAGGAACTGCCATAACAAATGTCAATAGGGAAGAAACACTAACGAGAAGATTGGCTCAAACATCACTCTCTCAAGCTAATGGGAGAGAGGCATCTATAGGAACTGCCTTAACAGATGCCAATAAGGAAGAAACACTAACAAAAAGATTGGTTCAAATATCACTCTCTCAAGCTAATGGGAGAGCGACATCTATAGGAATTGTCTTAACGGATG

Protein sequence

MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQASSNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQTSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANGRATSIGIVLTD

Homology

[Close]

BLAST of Bhi10G000061 vs. NCBI nr
Match: XP_031742557.1 (uncharacterized protein LOC101216331 isoform X2 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 116/176 (65.91%), Postives = 133/176 (75.57%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL  LPVCNQLPRN H+H V+ EKTE  NGNDIVPIVGWQ++RPRN+ +S+
Sbjct: 275 MVRR-CNLASLFALPVCNQLPRNIHKHAVKSEKTEILNGNDIVPIVGWQLKRPRNKLESR 334

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A+      NCSSRD DGGTK+ ELACQS  DL ANGR+T VGTAIT+VN+EETLT+   Q
Sbjct: 335 ANIALQILNCSSRDDDGGTKIGELACQSAFDLNANGRETNVGTAITDVNKEETLTKGSTQ 394

Query: 121 TSLSQANG-----REASIGTALTDANKEETLTKRLVQISLSQANGRATSIGIVLTD 167
            SLSQ NG     R+ SIGTAL D NK+ETLTK   Q SL QA+GR TS G  +TD
Sbjct: 395 ISLSQVNGLQGNRRDTSIGTALIDVNKDETLTKGCAQTSLLQADGRDTSTGTTVTD 449

[Close]

BLAST of Bhi10G000061 vs. NCBI nr
Match: XP_011658415.1 (uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus] >XP_031742556.1 uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 116/176 (65.91%), Postives = 133/176 (75.57%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL  LPVCNQLPRN H+H V+ EKTE  NGNDIVPIVGWQ++RPRN+ +S+
Sbjct: 275 MVRR-CNLASLFALPVCNQLPRNIHKHAVKSEKTEILNGNDIVPIVGWQLKRPRNKLESR 334

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A+      NCSSRD DGGTK+ ELACQS  DL ANGR+T VGTAIT+VN+EETLT+   Q
Sbjct: 335 ANIALQILNCSSRDDDGGTKIGELACQSAFDLNANGRETNVGTAITDVNKEETLTKGSTQ 394

Query: 121 TSLSQANG-----REASIGTALTDANKEETLTKRLVQISLSQANGRATSIGIVLTD 167
            SLSQ NG     R+ SIGTAL D NK+ETLTK   Q SL QA+GR TS G  +TD
Sbjct: 395 ISLSQVNGLQGNRRDTSIGTALIDVNKDETLTKGCAQTSLLQADGRDTSTGTTVTD 449

[Close]

BLAST of Bhi10G000061 vs. NCBI nr
Match: KGN46937.2 (hypothetical protein Csa_020879 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 5.7e-51
Identity = 116/176 (65.91%), Postives = 133/176 (75.57%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL  LPVCNQLPRN H+H V+ EKTE  NGNDIVPIVGWQ++RPRN+ +S+
Sbjct: 275 MVRR-CNLASLFALPVCNQLPRNIHKHAVKSEKTEILNGNDIVPIVGWQLKRPRNKLESR 334

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A+      NCSSRD DGGTK+ ELACQS  DL ANGR+T VGTAIT+VN+EETLT+   Q
Sbjct: 335 ANIALQILNCSSRDDDGGTKIGELACQSAFDLNANGRETNVGTAITDVNKEETLTKGSTQ 394

Query: 121 TSLSQANG-----REASIGTALTDANKEETLTKRLVQISLSQANGRATSIGIVLTD 167
            SLSQ NG     R+ SIGTAL D NK+ETLTK   Q SL QA+GR TS G  +TD
Sbjct: 395 ISLSQVNGLQGNRRDTSIGTALIDVNKDETLTKGCAQTSLLQADGRDTSTGTTVTD 449

[Close]

BLAST of Bhi10G000061 vs. NCBI nr
Match: XP_016902242.1 (PREDICTED: protein ROS1-like isoform X2 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL ELPVCNQLPRN H+H V   KTE  NGN+IVPIVGWQ++RPRNQ+KSQ
Sbjct: 276 MVRR-CNLASLFELPVCNQLPRNIHKHAVNSGKTEILNGNNIVPIVGWQLKRPRNQRKSQ 335

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A       NCSS D DG TK+ ELACQS  DL ANGR+T+VGTAIT+VN+EE LT+  AQ
Sbjct: 336 ARIALQILNCSSGDDDGVTKIGELACQSAFDLNANGRETHVGTAITDVNKEEILTKGSAQ 395

Query: 121 TSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANG------RATSIGIVLTD 167
           TS+S A GRE SI TALT+ NKEETLTK   QISL+Q NG      R TSIG  L D
Sbjct: 396 TSISHAIGRETSIETALTNVNKEETLTKGSAQISLAQVNGLTQGNRRETSIGTALID 451

[Close]

BLAST of Bhi10G000061 vs. NCBI nr
Match: XP_008458622.1 (PREDICTED: protein ROS1-like isoform X1 [Cucumis melo] >KAA0033377.1 protein ROS1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL ELPVCNQLPRN H+H V   KTE  NGN+IVPIVGWQ++RPRNQ+KSQ
Sbjct: 276 MVRR-CNLASLFELPVCNQLPRNIHKHAVNSGKTEILNGNNIVPIVGWQLKRPRNQRKSQ 335

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A       NCSS D DG TK+ ELACQS  DL ANGR+T+VGTAIT+VN+EE LT+  AQ
Sbjct: 336 ARIALQILNCSSGDDDGVTKIGELACQSAFDLNANGRETHVGTAITDVNKEEILTKGSAQ 395

Query: 121 TSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANG------RATSIGIVLTD 167
           TS+S A GRE SI TALT+ NKEETLTK   QISL+Q NG      R TSIG  L D
Sbjct: 396 TSISHAIGRETSIETALTNVNKEETLTKGSAQISLAQVNGLTQGNRRETSIGTALID 451

[Close]

BLAST of Bhi10G000061 vs. ExPASy TrEMBL
Match: A0A5A7SVP4 (Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00270 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL ELPVCNQLPRN H+H V   KTE  NGN+IVPIVGWQ++RPRNQ+KSQ
Sbjct: 276 MVRR-CNLASLFELPVCNQLPRNIHKHAVNSGKTEILNGNNIVPIVGWQLKRPRNQRKSQ 335

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A       NCSS D DG TK+ ELACQS  DL ANGR+T+VGTAIT+VN+EE LT+  AQ
Sbjct: 336 ARIALQILNCSSGDDDGVTKIGELACQSAFDLNANGRETHVGTAITDVNKEEILTKGSAQ 395

Query: 121 TSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANG------RATSIGIVLTD 167
           TS+S A GRE SI TALT+ NKEETLTK   QISL+Q NG      R TSIG  L D
Sbjct: 396 TSISHAIGRETSIETALTNVNKEETLTKGSAQISLAQVNGLTQGNRRETSIGTALID 451

[Close]

BLAST of Bhi10G000061 vs. ExPASy TrEMBL
Match: A0A1S4E1Z0 (protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL ELPVCNQLPRN H+H V   KTE  NGN+IVPIVGWQ++RPRNQ+KSQ
Sbjct: 276 MVRR-CNLASLFELPVCNQLPRNIHKHAVNSGKTEILNGNNIVPIVGWQLKRPRNQRKSQ 335

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A       NCSS D DG TK+ ELACQS  DL ANGR+T+VGTAIT+VN+EE LT+  AQ
Sbjct: 336 ARIALQILNCSSGDDDGVTKIGELACQSAFDLNANGRETHVGTAITDVNKEEILTKGSAQ 395

Query: 121 TSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANG------RATSIGIVLTD 167
           TS+S A GRE SI TALT+ NKEETLTK   QISL+Q NG      R TSIG  L D
Sbjct: 396 TSISHAIGRETSIETALTNVNKEETLTKGSAQISLAQVNGLTQGNRRETSIGTALID 451

[Close]

BLAST of Bhi10G000061 vs. ExPASy TrEMBL
Match: A0A1S3C8A0 (protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 118/177 (66.67%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL ELPVCNQLPRN H+H V   KTE  NGN+IVPIVGWQ++RPRNQ+KSQ
Sbjct: 276 MVRR-CNLASLFELPVCNQLPRNIHKHAVNSGKTEILNGNNIVPIVGWQLKRPRNQRKSQ 335

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A       NCSS D DG TK+ ELACQS  DL ANGR+T+VGTAIT+VN+EE LT+  AQ
Sbjct: 336 ARIALQILNCSSGDDDGVTKIGELACQSAFDLNANGRETHVGTAITDVNKEEILTKGSAQ 395

Query: 121 TSLSQANGREASIGTALTDANKEETLTKRLVQISLSQANG------RATSIGIVLTD 167
           TS+S A GRE SI TALT+ NKEETLTK   QISL+Q NG      R TSIG  L D
Sbjct: 396 TSISHAIGRETSIETALTNVNKEETLTKGSAQISLAQVNGLTQGNRRETSIGTALID 451

[Close]

BLAST of Bhi10G000061 vs. ExPASy TrEMBL
Match: A0A0A0KB10 (ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G150590 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.3e-48
Identity = 122/221 (55.20%), Postives = 137/221 (61.99%), Query Frame = 0


Query: 1   MVRRCCNLASLLELPVCNQLPRNFHEHVVEREKTENFNGNDIVPIVGWQIQRPRNQQKSQ 60
           MVRR CNLASL  LPVCNQLPRN H+H V+ EKTE  NGNDIVPIVGWQ++RPRN+ +S+
Sbjct: 275 MVRR-CNLASLFALPVCNQLPRNIHKHAVKSEKTEILNGNDIVPIVGWQLKRPRNKLESR 334

Query: 61  AS-----SNCSSRDGDGGTKVEELACQSPIDLKANGRDTYVGTAITNVNREETLTRRLAQ 120
           A+      NCSSRD DGGTK+ ELACQS  DL ANGR+T VGTAIT+VN+EE LT+  AQ
Sbjct: 335 ANIALQILNCSSRDDDGGTKIGELACQSAFDLNANGRETNVGTAITDVNKEEILTKGSAQ 394

Query: 121 TSLSQANGREASIGTALTD----------------------------------------- 167
           TS+SQANGRE SIGTALT+                                         
Sbjct: 395 TSISQANGRETSIGTALTNDSFCLTLTLFDNSKYYICSDCPGGLECNKVMALVGYNVALL 454

The following BLAST results are available for this feature:

BLAST of Bhi10G000061 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G000061 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G000061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742557.1	5.7e-51	65.91	uncharacterized protein LOC101216331 isoform X2 [Cucumis sativus]	[more]
XP_011658415.1	5.7e-51	65.91	uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus] >XP_031742556....	[more]
KGN46937.2	5.7e-51	65.91	hypothetical protein Csa_020879 [Cucumis sativus]	[more]
XP_016902242.1	2.2e-50	66.67	PREDICTED: protein ROS1-like isoform X2 [Cucumis melo]	[more]
XP_008458622.1	2.2e-50	66.67	PREDICTED: protein ROS1-like isoform X1 [Cucumis melo] >KAA0033377.1 protein ROS...	[more]

BLAST of Bhi10G000061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVP4	1.0e-50	66.67	Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S4E1Z0	1.0e-50	66.67	protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]
A0A1S3C8A0	1.0e-50	66.67	protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]
A0A0A0KB10	8.3e-48	55.20	ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G150590 PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000061	Bhi10M000061	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006287	base-excision repair, gap-filling
biological_process	GO:0045004	DNA replication proofreading
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006297	nucleotide-excision repair, DNA gap filling
cellular_component	GO:0008622	epsilon DNA polymerase complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0008310	single-stranded DNA 3'-5' exodeoxyribonuclease activity