Bhi09G002297 (gene) Wax gourd (B227) v1

Overview
NameBhi09G002297
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr9: 73288869 .. 73289025 (-)
RNA-Seq ExpressionBhi09G002297
SyntenyBhi09G002297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

mRNA sequence

TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

Coding sequence (CDS)

TGTCCTGAAAATAAAGAAGCAAACTATGCCGAAATAGATGAAGAAGAAGAAATGCTTCTAATGTCCTATGAGGAATTGCATGGAGTCAAAAGAGAAGATACATGGTTTCTTGATTCCGGGTGTTCTAATCATATGTGTGGTGATCGATCCATGTTTA

Protein sequence

CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF
Homology
[Close]
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match: A0A2K3M2V4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g041175 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CPENKEANYAEIDEE EMLLMSY EL+  KRED WFLDSGCSNHMCGDR++F
Sbjct: 259 CPENKEANYAEIDEETEMLLMSYVELYEAKREDAWFLDSGCSNHMCGDRTVF 310

[Close]
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match: A0A5A7SQE0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00540 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-17
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   CPENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           C ENKEANYA   EEEEMLLMSYE+ HGV+REDTWFLDSGCSNHMCGDRSMF
Sbjct: 259 CSENKEANYA---EEEEMLLMSYEKKHGVQREDTWFLDSGCSNHMCGDRSMF 307

[Close]
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match: A0A2N9H9R9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-17
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   CP-ENKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP ENKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 257 CPSENKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 309

[Close]
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match: A0A6P5TJT0 (uncharacterized protein LOC110768314 OS=Prunus avium OX=42229 GN=LOC110768314 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEM+LMSY EL+  +REDTWFLDSGCSNHMCGDR+MF
Sbjct: 58  CPSGNKEANYAELDEEEEMILMSYVELYKARREDTWFLDSGCSNHMCGDRTMF 110

[Close]
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match: A0A4Y1QX25 (ADP glucose pyrophosphorylase large subunit 1 OS=Prunus dulcis OX=3755 GN=Prudu_005175 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   CPE-NKEANYAEIDEEEEMLLMSYEELHGVKREDTWFLDSGCSNHMCGDRSMF 53
           CP  NKEANYAE+DEEEEMLLMSY EL+  +RED WFLDSGCSNHMCGDR+MF
Sbjct: 259 CPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNHMCGDRTMF 311

The following BLAST results are available for this feature:
BLAST of Bhi09G002297 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G002297 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G002297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2K3M2V41.1e-1784.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol... [more]
A0A5A7SQE06.9e-1786.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A2N9H9R96.9e-1783.02Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1[more]
A0A6P5TJT01.2e-1681.13uncharacterized protein LOC110768314 OS=Prunus avium OX=42229 GN=LOC110768314 PE... [more]
A0A4Y1QX252.6e-1681.13ADP glucose pyrophosphorylase large subunit 1 OS=Prunus dulcis OX=3755 GN=Prudu_... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002297Bhi09M002297mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098655 cation transmembrane transport
biological_process GO:0016311 dephosphorylation
biological_process GO:0015074 DNA integration
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050826 response to freezing
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0019829 ATPase-coupled cation transmembrane transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0071949 FAD binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding