Bhi09G002293 (gene) Wax gourd (B227) v1

Overview
NameBhi09G002293
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionNDR1/HIN1-like protein 12
Locationchr9: 73269826 .. 73270431 (+)
RNA-Seq ExpressionBhi09G002293
SyntenyBhi09G002293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCAAATTTCCTATCCAGTATTAAGCGACATACTCATCCTCTGATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACAGACCGATTTCGTCCTGCTTTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAACAAAATGAGTTACCTAGATTTGCATTTCTTAGTGGAATCATCAGCGATTCCGCTCAATCCAACGCAAATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATGCAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAATTTTGGGACCCCTCAAGTTTTGGTGCCGTTTGAACTGTCACCTCAGGTTTTACCCGCGTAATGGAAGCTACATCCCTGCGCCTTGTTCTTCAAGGCAGAAGTAA

mRNA sequence

ATGCCACCAAATTTCCTATCCAGTATTAAGCGACATACTCATCCTCTGATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACAGACCGATTTCGTCCTGCTTTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAACAAAATGAGTTACCTAGATTTGCATTTCTTAGTGGAATCATCAGCGATTCCGCTCAATCCAACGCAAATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATGCAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAATTTTGGGACCCCTCAAGTTTTGGTGCCGTTTGAACTGTCACCTCAGGTTTTACCCGCGTAATGGAAGCTACATCCCTGCGCCTTGTTCTTCAAGGCAGAAGTAA

Coding sequence (CDS)

ATGCCACCAAATTTCCTATCCAGTATTAAGCGACATACTCATCCTCTGATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTGACGATCCGCCCTAGGGTACCTTCAATCAGTGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGGGCACACGCAAGCTTTTCACAGACCGATTTCGTCCTGCTTTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAACAAAATGAGTTACCTAGATTTGCATTTCTTAGTGGAATCATCAGCGATTCCGCTCAATCCAACGCAAATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATGCAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAATTTTGGGACCCCTCAAGTTTTGGTGCCGTTTGAACTGTCACCTCAGGTTTTACCCGCGTAATGGAAGCTACATCCCTGCGCCTTGTTCTTCAAGGCAGAAGTAA

Protein sequence

MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNCHLRFYPRNGSYIPAPCSSRQK
Homology
BLAST of Bhi09G002293 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-52
Identity = 101/192 (52.60%), Postives = 136/192 (70.83%), Query Frame = 0

Query: 11  RH-THPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGL 70
           RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+
Sbjct: 7   RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKYDIVGV 66

Query: 71  LEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMSYLDLHFLVE 130
           L+ Q+ IV+R EN NA+AHA F +T+F L ++G  IA L A   F+V K   + L +LV+
Sbjct: 67  LQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPE-FEVVKEKSMFLPYLVQ 126

Query: 131 SSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNCHLRFYPRNG 190
           S  IPLNPT MQ + +++K+D++ F+LKG SRTRWRVG LG +KF C L+C LRF P + 
Sbjct: 127 SYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPSDH 186

Query: 191 SYIPAPCSSRQK 202
           SYIP+PC+S  K
Sbjct: 187 SYIPSPCTSAHK 197

BLAST of Bhi09G002293 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-10
Identity = 47/192 (24.48%), Postives = 85/192 (44.27%), Query Frame = 0

Query: 11  RHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLL 70
           + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAH-RPFKVNKMSYLDLHFLVE 130
              + +VV   N + ++   FS   F L F    IA+   H  PF V K   +   F + 
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLV 247

Query: 131 SSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNCHLRF-YPRN 190
           SS + +   Q Q L   L    +  +L+G+   R  +G L    +W    C +    P  
Sbjct: 248 SSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPA 307

Query: 191 GSYIPAPCSSRQ 201
           G+     C++++
Sbjct: 308 GTMRARRCNTKR 317

BLAST of Bhi09G002293 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 45/183 (24.59%), Postives = 81/183 (44.26%), Query Frame = 0

Query: 20  AGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLDRIRSSRTGLLEVQMKIVVR 79
           A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L   + +VV 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AENQNARAHASFSQTDFVLLFDGIEIASLVAH-RPFKVNKMSYLDLHFLVESSAIPLNPT 139
             N + ++   FS   F L F    IA+   H  PF V K   +   F + SS + +   
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLVSSQVQIQMI 124

Query: 140 QMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNCHLRF-YPRNGSYIPAPCS 199
           Q Q L   L    +  +L+G+   R  +G L    +W    C +    P  G+     C+
Sbjct: 125 QSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGTMRARRCN 184

Query: 200 SRQ 201
           +++
Sbjct: 185 TKR 185

BLAST of Bhi09G002293 vs. ExPASy TrEMBL
Match: A0A6J1FL61 (uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC111446247 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106
Identity = 192/201 (95.52%), Postives = 197/201 (98.01%), Query Frame = 0

Query: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNARAHASFS TDFVL+FDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQMQHL WSLKR+LMQFDLKGSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRQK 202
           HLRFYPRNGSYIPAPCSSR K
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

BLAST of Bhi09G002293 vs. ExPASy TrEMBL
Match: A0A5D3BSN8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00630 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0

Query: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICATIALAVI+AGIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIVAGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFS+TDFVLLFDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSKTDFVLLFDGIEIASLVAHRPFKVNKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKR+L+QFDLKGSSRTRWRVGILGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRNLIQFDLKGSSRTRWRVGILGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRQK 202
           HLRF PRNGSYIP PCSS QK
Sbjct: 181 HLRFLPRNGSYIPMPCSSNQK 201

BLAST of Bhi09G002293 vs. ExPASy TrEMBL
Match: A0A0A0L1I9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.4e-104
Identity = 187/201 (93.03%), Postives = 198/201 (98.51%), Query Frame = 0

Query: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHL+
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHA FS+TDFVLLFDGIEIASLVAHRPFKVNKM+
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHLSWSLKRDL+QFDLKGSSRTRWRVG+LGPLKFWCRL+C
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRQK 202
           HLRF+PRNGSYIP PCSS+QK
Sbjct: 181 HLRFFPRNGSYIPTPCSSKQK 201

BLAST of Bhi09G002293 vs. ExPASy TrEMBL
Match: A0A6J1C199 (uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007456 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.9e-104
Identity = 187/201 (93.03%), Postives = 196/201 (97.51%), Query Frame = 0

Query: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPP FLSS+KRHTHPLIWIAGIICATIALAVII GIVIFIGYVTIRPRVPSISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHASFSQTDFVL+FDGIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNPTQM HLSWSLKR+LMQFDLKGSSRTRWRVG+LGPLKFWCRLNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 181 HLRFYPRNGSYIPAPCSSRQK 202
           HLRF+PRNGSY+PAPCSS+ K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

BLAST of Bhi09G002293 vs. ExPASy TrEMBL
Match: A0A6J1FEV3 (uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC111443437 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.1e-102
Identity = 185/201 (92.04%), Postives = 192/201 (95.52%), Query Frame = 0

Query: 1   MPPNFLSSIKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLD 60
           MPPNFLSS+KRHTHPLIWIAGIICATIA+AVIIAGIVIFIGYVTIRP VPSISVTDGHLD
Sbjct: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSQTDFVLLFDGIEIASLVAHRPFKVNKMS 120
           RIR+SR GLLEVQMKIVVRAENQNARA ASFS TDFVL+FDGIEIASLVAHRPFKVNKMS
Sbjct: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132

Query: 121 YLDLHFLVESSAIPLNPTQMQHLSWSLKRDLMQFDLKGSSRTRWRVGILGPLKFWCRLNC 180
           YLDLHFLVESSAIPLNP QMQHLSWSL R+LMQFDLKGSSRTRWRVG+LGPLKFWC LNC
Sbjct: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCHLNC 192

Query: 181 HLRFYPRNGSYIPAPCSSRQK 202
            LRFYPRNGSYIPAPCSS+ K
Sbjct: 193 RLRFYPRNGSYIPAPCSSKDK 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G45320.13.9e-5252.60FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G13050.13.7e-1024.48unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G13050.24.1e-0924.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FL611.2e-10695.52uncharacterized protein LOC111446247 OS=Cucurbita moschata OX=3662 GN=LOC1114462... [more]
A0A5D3BSN81.5e-10494.53NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0L1I94.4e-10493.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1[more]
A0A6J1C1999.9e-10493.03uncharacterized protein LOC111007456 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1FEV37.1e-10292.04uncharacterized protein LOC111443437 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852:SF9LATE EMBRYOGENESIS ABUNDANT PROTEINcoord: 10..201
NoneNo IPR availablePANTHERPTHR31852LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILYcoord: 10..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002293Bhi09M002293mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006898 receptor-mediated endocytosis
cellular_component GO:0030124 AP-4 adaptor complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0140312 cargo adaptor activity