Bhi09G002241 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002241
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr9: 71720255 .. 71723955 (-)
RNA-Seq Expression	Bhi09G002241
Synteny	Bhi09G002241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACGATCCAAATTTATTTCAAGTCCAAGCCGGGAAAGCCCACAAAGATCTGTCTTCCTCCTCCCCCTCAAGAAAACGACGAACCTGAAAAACCTTCTCAGGGTTCTCGGAGCTTCATTGCAGAATGGACTTAGCCTCCAAATTTCTTCGAACTGTGACCAATGCCACCAACAACAACACCCTTATCAACGTTTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGCAAGATCGATCAAGCAGCAGAGGGAAATTGAAGCTCTGGAAGCCGAGAAAGTTTCACTTCTGAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTCTTCGCCGAAGCCTCAACCGACTCCGCTTTGGTCCCCCTCGCCAGGATCAAAGCCATCTATGGCGAAGCTCCGATTTCCCCTTCCGGTAGTGTACCCCTTCCTTCTCTCTGATCTATTCTTTGTGTTTTTTACTTGCTGTTGTTTAAAAAGTGAGTGTTTAGTTGAATATATCGAAATGTTCGTTAATTTTGACTGGAAATGGTACACATATAGATTCTTGTTAGAAATTGACTGTCGTCATTGAGAATGATGGCTTGTTCAAAGCATTTCAAACTCTCCCTACTCCTAGTTAGAAAGTTATTGGGTTCCGTTACTACTTCATCTATCTTTTGATTTTTCTCATTGTCTAATTATGAAGTCAAATGTTGTCATAATCAAGTTGTTCTTGGTTGTCATGGATTCTAATTGTCTCGGAAGTACCAGCCAAAACCCAGGAAGCAAGTAAAGTAAAAGATTCTGAATCGATAGAGAATGGTTCTTATCACCGTTATATGAAAAGAGTGTATGAGAATTGAATGTTCTAACGACCTCAGATCCTATAGGTTGTACAACTGTATCCTTGAGTTCTAAGAATGGAATGTTCTACCATTGGATGCTGAAGTTGAAAACTAAAGTTAAAGATAAAGAAGGAACCAAATCCAGTCAAATCCTAAACCCAACAAACACTTCAATACCTTCATCCTTTCTTACCCCCGCATCTTATTACAAATCACCAAGATCCGATCAGGGTGTTTATAATCTGGAGTAAAAGGATTCTGGCTTCTTGTTGAGCTTAGCAAAATCGAGGTTTATGATAACGTTAGCGTCGTCCAAAAGAGGGAATAAGAGTAGGAAAGGTCCGGAGATGATTTCCTATATGTACTCTCCAATTCTCATTTCCTTCATCATCTTTTTGCACTTGATTTGTGGTACCATTTCGTTGTCCTTCATTTTGAGTCATCATTCTGTTAGGACCTTCTCCTAACAAGAACAATACTCAAGAATACAGAATAAATTCAAGGACAATTCAATTATAGAAATATAGGAAAATGTATTGAATTATAACTCATAAGCAAAGTAACAAGATAAACCCTAGCCTTTTCGAGAGGGCTAGACTCTCCCAAATTCCCAATTAGGAAATCTTCACATAAAATTCTCCATACCCTTATTCCCACCCTACTTCCTCTATTTATAACCAAAAGACCTAACCAGCCTATTAACTATTTACTAATTTGCCATTCTATTAACCATACTAATATTCTACTAATAACTCCATTATATCTCTAACTAGGTCTCTTACACATTCCACTTTTATTTCTGGTAGCACGCCCCACACTCATGCACCGCTCGACAATGGGCGGAAATTTCAACGGGATAGACCATGTCCTATTAAAGTTCATATTCCTGCACAACTGATGCAGAGGTTTGTCATTATTGTAGAAGAGTTTGATATTAATATATGCTTCATAAAACTTTACCGGGAAAACATTGCTACTGTACTGTGTTTTTAGATGAGAAGGAGACGCTTGGAAAACTTATATGCAAAAAGAAGTAATTTCTCCTATTGGGAGTTTAAGGAAGGCACTTCAGTTCAAGTTAATTGCGAAGGCAGAATAGTCAAAAGGAGTTGGAAAGGGAAAAAAAAACAAAGCTTAAACTTCTTCCCTATATCTCTCCCTATTATTAGAAATCTGTTAATTTCTTTCTAGCCAAGCCACAAGGTCCCACGCCTAGTCCTGGACTGCATTCTTCTATAGGATCTCTGTCCTTTTTCTATATAAAAAAAATAATAATAATAAGAAACCATTTCATTAATAAATGAAATATCCAAAGTACAAACAAAATCCAAGTACAAGATGAACCAACAAGACAAATCCCAACAATATATGAAAAATACAATGAAATCAAAGGGGAGGGGGGAAGAACAAAATGTCGATTAAAAAACAGAATGATGATCTCTGTCTTTCTTTTAAAGTTATCCACACAGAAGCTGCATAAAAAATCAAGAAAAAGATTATGTATGGGAAAAGATCTTCATGAACCTTTCTGCCGAAAGATAAGAAAACTAGTAAATGGCTTTATGTTTCCTTTGGATTCCTACATAATGAGCACCAATTTAACTTGGTTGTAAGATCATCAATGGACATATTCAAATTGGATTTGTGTCACTCCATTGTGTTTAGATCAAGAGACACAAACCAGCAGTGATGCTCGATCTTATAGGTTTGTTACCTTTCCTAATTGAGAGTGACTAGTTTCTATGTAGCAAGGAAATCAGTCTGCTATCGAGCTGTCATTTGTCAATAGACATGTACTACTTTTATCAATCTTGTGAAAAATATTACCCTGTTGACGATGACTGTAGTATGTATTTGACAACTTGTGAGGAGTTATAAAGATCTTTGGTCGAGAATTGGTATTCACGACTCAAATGTCTGCTTTCAGCACAAACGAATAGTTAGCCCAGGTAGATTGGAGGATAAACGGCATGAGTGGATTTTTTAAGAAACAATTCTAATGTATGGTTTGATGCAAAACTTTTACCTTTTTTGCTGGTTGAGTTCTTGCATGACAATGTTGGGAATATATAAAATGATTACCTGTAATAACCATAATGTATTATTTAAGAGTTTCAGGTCTCAATTAAGATTTGGTCAAATCCCATCCATATTTTATAGTTGTCGAACATATGACTCGAATGCTCCCTCTGTTGAAAATGCTTTTTCAAGTTTGATTACAAAAAGAAGGGCTGGCTTAGAATGACTATTTTAAGTGTTAAGAACACTTTTAGTACTTAAAAGTCATTTCAAATAGGTCCGAAATCATCTTAGTGAGATCTGAGAAGGTGATCGTTATTGTATAAGCTTAGCTTTTACGGATTTATCCACTGATCCAATTTTTATGGACCATACAGGAGTAGGGCATGTTGCAACCGAAGATGCAAATTCACAAGGCTCCAAACTTATGGTTTAATGTTAGTTTACTCTAGTTTTTGAGGTTTTGTTTCCTTGGTTCACGAAATTGCATATTGTATGCTTTAGGCTAAAATAAAATAATGCAGGGTATTAGGAATTAGATTTTCCAAAAGTACTACCAACTTAACTTCAATGACAGACAGATATACGATTCCCTCACATTGTCAAAAAGAAAAAAGAAAAAATCCTTTTCATTTGTCATTAATTCCTCAAGAATAAAACAGCTATATAATCTTGTGGCCACAATTTCCATGATGCCCCCAACATCATCCTGCAACATTTTTGCAACTATTTTAAAATTGTAATGATTAGGTGTCTAGATTACACTTATTTCATACTATCACTTTATTTCACACATGCCACATGTTAGATTTTTAGTGCACAAATGCTCGGGTAACTAAACATCCAAC

mRNA sequence

TTACGATCCAAATTTATTTCAAGTCCAAGCCGGGAAAGCCCACAAAGATCTGTCTTCCTCCTCCCCCTCAAGAAAACGACGAACCTGAAAAACCTTCTCAGGGTTCTCGGAGCTTCATTGCAGAATGGACTTAGCCTCCAAATTTCTTCGAACTGTGACCAATGCCACCAACAACAACACCCTTATCAACGTTTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGCAAGATCGATCAAGCAGCAGAGGGAAATTGAAGCTCTGGAAGCCGAGAAAGTTTCACTTCTGAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTCTTCGCCGAAGCCTCAACCGACTCCGCTTTGGTCCCCCTCGCCAGGATCAAAGCCATCTATGGCGAAGCTCCGATTTCCCCTTCCGGAGTAGGGCATGTTGCAACCGAAGATGCAAATTCACAAGGCTCCAAACTTATGGTTTAATGTTAGTTTACTCTAGTTTTTGAGGTTTTGTTTCCTTGGTTCACGAAATTGCATATTGTATGCTTTAGGCTAAAATAAAATAATGCAGGGTATTAGGAATTAGATTTTCCAAAAGTACTACCAACTTAACTTCAATGACAGACAGATATACGATTCCCTCACATTGTCAAAAAGAAAAAAGAAAAAATCCTTTTCATTTGTCATTAATTCCTCAAGAATAAAACAGCTATATAATCTTGTGGCCACAATTTCCATGATGCCCCCAACATCATCCTGCAACATTTTTGCAACTATTTTAAAATTGTAATGATTAGGTGTCTAGATTACACTTATTTCATACTATCACTTTATTTCACACATGCCACATGTTAGATTTTTAGTGCACAAATGCTCGGGTAACTAAACATCCAAC

Coding sequence (CDS)

ATGGACTTAGCCTCCAAATTTCTTCGAACTGTGACCAATGCCACCAACAACAACACCCTTATCAACGTTTGTTTGGTCCTTTCCTTTGGGGCACTGAGCGCAAGATCGATCAAGCAGCAGAGGGAAATTGAAGCTCTGGAAGCCGAGAAAGTTTCACTTCTGAATTCCAATAAAGCGCTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTCTTCGCCGAAGCCTCAACCGACTCCGCTTTGGTCCCCCTCGCCAGGATCAAAGCCATCTATGGCGAAGCTCCGATTTCCCCTTCCGGAGTAGGGCATGTTGCAACCGAAGATGCAAATTCACAAGGCTCCAAACTTATGGTTTAA

Protein sequence

MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKALKKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV

Homology

[Close]

BLAST of Bhi09G002241 vs. TAIR 10
Match: AT1G48200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-23
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 3   LASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKALKK 62
           +A+K    ++ A NNN +IN CL +SF  L  RS KQQ+ +EAL  +K SL  SNKA+K 
Sbjct: 1   MANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKL 60

Query: 63  TMWDWKQQLFAEAST--DSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 119
           TMW+WKQQLFAEA++  ++A+VPL+ +KAIYGE   + +  G  A ED+     K+M+
Sbjct: 61  TMWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118

[Close]

BLAST of Bhi09G002241 vs. ExPASy TrEMBL
Match: A0A6J1IGY3 (uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.0e-49
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60
           MDLASKFLRT+TNATNNNTLINVCLV+SFGALSARSIKQQREIEALEAEK SLLNSNKAL
Sbjct: 1   MDLASKFLRTLTNATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 119
           KKTMWDWKQQL++EASTDSAL+PLARIKAIY EAP+SPSG    AT DANSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSEASTDSALIPLARIKAIYSEAPVSPSGAEQAATGDANSQGSKLMV 118

[Close]

BLAST of Bhi09G002241 vs. ExPASy TrEMBL
Match: A0A6J1F9J6 (uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC111443531 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60
           MDLA+KFLRTVT+ATNNNTLINVCLV+SFGALSARSIKQQREIEALEAEK SLLNSNK+L
Sbjct: 1   MDLATKFLRTVTSATNNNTLINVCLVISFGALSARSIKQQREIEALEAEKDSLLNSNKSL 60

Query: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 119
           KKTMWDWKQQL+++ASTDSALVPLARIKAIYGEAP+SPSG    AT DANSQGSKLMV
Sbjct: 61  KKTMWDWKQQLYSDASTDSALVPLARIKAIYGEAPVSPSGAEQAATGDANSQGSKLMV 118

[Close]

BLAST of Bhi09G002241 vs. ExPASy TrEMBL
Match: A0A6J1CGB8 (uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011272 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60
           MD+A+KFLRT+TNA+NN TLINVCLV+SFGALSARSIKQQREIEALEAEK SLLNSNKAL
Sbjct: 1   MDMATKFLRTLTNASNNKTLINVCLVVSFGALSARSIKQQREIEALEAEKDSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPI-SPSGVGHVATEDANSQGSKLMV 119
           KK+MWDWKQQLFAEAS++SALVPLARIKAIYGE PI SP+G GH ATED NSQGSK +V
Sbjct: 61  KKSMWDWKQQLFAEASSESALVPLARIKAIYGEVPISSPTGAGHAATEDENSQGSKFVV 119

[Close]

BLAST of Bhi09G002241 vs. ExPASy TrEMBL
Match: A0A1S3B9R7 (uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 98/118 (83.05%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60
           MDLASKFLR ++N  N NTLINVCLV SF ALSARSIKQ+R+IEALEAEK SLL+SNKAL
Sbjct: 1   MDLASKFLRILSNDNNKNTLINVCLVFSFAALSARSIKQERQIEALEAEKNSLLDSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSGVGHVATEDANSQGSKLMV 119
           KKTMWDWKQQLFAEAST SALVPLARIKAIYGEAPISPSG  + ATEDA S+ SKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTQSALVPLARIKAIYGEAPISPSGAVNAATEDATSRSSKLMV 118

[Close]

BLAST of Bhi09G002241 vs. ExPASy TrEMBL
Match: A0A0A0L380 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MDLASKFLRTVTNATNNNTLINVCLVLSFGALSARSIKQQREIEALEAEKVSLLNSNKAL 60
           MD ASKFLR++ NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK SLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTDSALVPLARIKAIYGEAPISPSG 101
           KKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPSG
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG 100

The following BLAST results are available for this feature:

BLAST of Bhi09G002241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48200.1	1.0e-23	48.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

BLAST of Bhi09G002241 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi09G002241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGY3	7.0e-49	88.98	uncharacterized protein LOC111477117 OS=Cucurbita maxima OX=3661 GN=LOC111477117...	[more]
A0A6J1F9J6	2.0e-48	88.14	uncharacterized protein LOC111443531 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1CGB8	3.2e-46	84.87	uncharacterized protein LOC111011272 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3B9R7	2.0e-43	83.05	uncharacterized protein LOC103487583 OS=Cucumis melo OX=3656 GN=LOC103487583 PE=...	[more]
A0A0A0L380	3.2e-38	86.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G364020 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	PANTHER	PTHR38355	OS06G0149500 PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002241	Bhi09M002241	mRNA