Bhi09G002142 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002142
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Hydroxyproline-rich glycoprotein
Location	chr9: 68911069 .. 68913861 (+)
RNA-Seq Expression	Bhi09G002142
Synteny	Bhi09G002142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAAAAGAAAATTAAAAATATACCGTTTAATATTTTTGTCCATAAATTTAATTGTTGCCACTGGCCATCAATGAAATTCTGGAGAAGTTGATCGGAGAAAGTAGAGAGAGATAGAAAAATGGAGTACGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTCTGCATGTGTTGTTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATCATTTCTTGGTTGTCCCGATCATCTCCACCACCACCATCCGCCCATTCCGCCGCAAACCGCAGCCTTCTCACCGCCCGATAAGATTTCGCCAATTCATACGGTGCGTTTAGTTCCTTCTTATTCTTCTATTTATAGCGTATAATTTAATCAAAATTACCCATCAACTGTTCTTTTAAATTTCCAAATTATCTCAATTAAACTTTTAAAAGATTACAAAAATACACTGATTAATTTCAACGGAAATTGTATTTTATTCATAGTATGTTTGGAATACCTTTTCAAATATTTAATTTAAAAAATAAATCATTTTAAAAGAAATTAATTTCAGATGTATTTTAATTCCTTTTTATGAAAAATGTTTAAATAAAAATAAAATTTTTTAAAAAATACGATTTTCTCAAATCCATTCAAACGGTCCTTTAAGCTATAAGATTTTCGGAAACTTTAAATTTTCGTTGCATTAAACTTTTTGTTTTCTTAAATTTTCCTGGTTAAGTTATTATTTAAAAACTAATACTATAATAATTTAACAGAGTTAAAAGAAAGATTTTTTTTTTTTCTTTTTTGAAATGGAGTTAAAGAAAGACTTGGTTTGTAGTTTTTGCAGTTTCCTATTCTTGAATATTAAAACCTTTTTTATTTCTTCAAATTGGGGTAAATATCAATTTATATCCTTAAACTTTGATGATTGTATTAATTTAAACTTTAAACTAATAATTGTATCAATTTAAGCTTGAACTTTATGAGTGTATCAATTTAAACCCAAAATTAATAATTATATCAATTTAAACCCAGAACTTTAAAGATTATATCAACTTAAACACTTCACTATGTTTCATATGGATAAACATAGTATAAGATTTGTAATTCTATCAATTAAACCTCTGAATTTATATAAATTTGATGGAAAAAAATCAAGTATTTTACCTGATATTTTTCTAATTAAATAGAAAGAAAAGTGTAAATTAATATAATTATAAAAGTTTAGGGTTTAAATTGATATACTTAATAAAATTTTAAAGTTTAAATCGATACAATTATTAGTTTGTGATTTAAATTGATACAACTTATAAAGTTTAGGTATATCAAATTTATAAACTCTATTTTCACCAATAATTTGTATTTTCTTTTTCTTTTTTTATCTGACCTGTACTAATATTTTTCTTTAAAAAATAAGTCACATTCTATCCAATTATTCAACTATGCAGGTTATTTTATTTTTTCATTTTTGCTGTGTTTTGTTATGGAATTGGGTTGAATGCACCAGAATAGATGCAACTTGAAAATGAAGTATTACTTCCTAAAAATCAACTCATAATTTAAGGGGAAAAAAACAATTAATAGTTGTAGTCTAATCTTGGAAGTAATTATCAAAATTGGTTTTTTTTTCTTTCTAAATTTCACTAAAATTCAAATCTTTCTTTTTTTAAAAAAAAAAAACATAAATTTCAATAATATAAAACTAAAATGAAATTTTAAAGGGGTCTTTTTTATTATTTTTATTTTATTTTATTTCTATACGTGTTTGATCTTTCCCTTCATCTCTTATTCTATAAACAAGAAGATATGGAGGGAGAATCGGCCGCAAAGCCTGTCGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGGCTTTGGTAGAAATTGTAGTACAGAAACCTTCTCAGAGTTTTCCGGACTCTTCTTTGTAGCTCTCTCTTTAATTAGTTAATGC

mRNA sequence

TGAGAAAAGAAAATTAAAAATATACCGTTTAATATTTTTGTCCATAAATTTAATTGTTGCCACTGGCCATCAATGAAATTCTGGAGAAGTTGATCGGAGAAAGTAGAGAGAGATAGAAAAATGGAGTACGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTCTGCATGTGTTGTTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATCATTTCTTGGTTGTCCCGATCATCTCCACCACCACCATCCGCCCATTCCGCCGCAAACCGCAGCCTTCTCACCGCCCGATAAGATTTCGCCAATTCATACGAAGATATGGAGGGAGAATCGGCCGCAAAGCCTGTCGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGGCTTTGGTAGAAATTGTAGTACAGAAACCTTCTCAGAGTTTTCCGGACTCTTCTTTGTAGCTCTCTCTTTAATTAGTTAATGC

Coding sequence (CDS)

ATGGAGTACGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTCTGCATGTGTTGTTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATCATTTCTTGGTTGTCCCGATCATCTCCACCACCACCATCCGCCCATTCCGCCGCAAACCGCAGCCTTCTCACCGCCCGATAAGATTTCGCCAATTCATACGAAGATATGGAGGGAGAATCGGCCGCAAAGCCTGTCGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGCGGCGGCGGCTTTGGTAGAAATTGTAGTACAGAAACCTTCTCAGAGTTTTCCGGACTCTTCTTTGTAG

Protein sequence

MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPIPPQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAALVEIVVQKPSQSFPDSSL

Homology

[Close]

BLAST of Bhi09G002142 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-10
Identity = 48/119 (40.34%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPIPPQTAAFSPPDK 72
           SL FP+G  LLL  +F +   FSCC HW+K RS       L        P     S P K
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRS-------LRRSLANGRPSADIESNPYK 77

Query: 73  ISPIHTKIWRENRPQSLS--VLMPGDEVPRFIAMACPPCA--AAALVEIVVQKPSQSFP 128
             P   ++    +PQ+LS  VLMPGD  P+FIA+ C PCA      + + VQ P QS P
Sbjct: 78  PKPPFPEM---KKPQNLSVPVLMPGDNTPKFIALPC-PCAPPRPEKLTVDVQTPPQSPP 125

[Close]

BLAST of Bhi09G002142 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-09
Identity = 48/119 (40.34%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPIPPQTAAFSPPDK 72
           SL FP+G  LLL  +F +   FSCC HW+K RS       L        P     S P K
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRS-------LRRSLANGRPSADIESNPYK 77

Query: 73  ISPIHTKIWRENRPQSLS--VLMPGDEVPRFIAMACPPCA--AAALVEIVVQKPSQSFP 128
             P   ++    +PQ+LS  VLMPGD  P+FIA+ C PCA      + + VQ P QS P
Sbjct: 78  PKPPFPEM---KKPQNLSVPVLMPGDNTPKFIALPC-PCAPPRPEKLTVDVQTPPQSPP 125

[Close]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL
Match: A0A5D3E545 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005320 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PP--QTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPC--AAAALVE 120
           PP    AA SPPDK SPIHT IW+ENRPQS+SVLMPGDEVPRFIA+ACPPC  AAAALVE
Sbjct: 61  PPPHSPAALSPPDKFSPIHT-IWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVE 120

Query: 121 IVVQKPSQSFPDSSL 132
           IVVQKPSQS  DSSL
Sbjct: 121 IVVQKPSQSISDSSL 134

[Close]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL
Match: A0A1S3CQS4 (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PP--QTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPC--AAAALVE 120
           PP    AA SPPDK SPIHT IW+ENRPQS+SVLMPGDEVPRFIA+ACPPC  AAAALVE
Sbjct: 61  PPPHSPAALSPPDKFSPIHT-IWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVE 120

Query: 121 IVVQKPSQSFPDSSL 132
           IVVQKPSQS  DSSL
Sbjct: 121 IVVQKPSQSISDSSL 134

[Close]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL
Match: A0A6J1F906 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111443410 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.5e-57
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAALVEIVVQ 120
           PP+T AFSPPDK SPIHT IW+ENRP+SL+VLMPGDEVPRFIAMACPPC AA LVEIV+Q
Sbjct: 61  PPETPAFSPPDKFSPIHT-IWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

Query: 121 KPSQS 126
           KPSQS
Sbjct: 121 KPSQS 124

[Close]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL
Match: A0A6J1IEI5 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111476516 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 108/125 (86.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 61  PPQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAALVEIVVQ 120
           PP+T AFSPPDK SPIHT IW+ENRP+SL+VLMPGDEVPRFIAMACPPC AA LVEIV+Q
Sbjct: 61  PPETPAFSPPDKFSPIHT-IWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

Query: 121 KPSQS 126
           KPSQS
Sbjct: 121 KPSQS 124

[Close]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL
Match: A0A6J1CGJ4 (uncharacterized protein At5g65660-like OS=Momordica charantia OX=3673 GN=LOC111011330 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60
           M+YD+REAQDPASLSFPVGLVLLLTF FCMCCFFSCCLHW+KLRSFLGCPD  H H PPI
Sbjct: 1   MDYDDREAQDPASLSFPVGLVLLLTFFFCMCCFFSCCLHWDKLRSFLGCPD--HRHPPPI 60

Query: 61  PPQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAA----LVE 120
           PP+ AA SPPDKI P+HT     N+ QSL V+MPGDE PRFIAMACPPCAAA      V+
Sbjct: 61  PPENAASSPPDKILPLHT-----NQSQSLPVVMPGDEFPRFIAMACPPCAAAVAAAPFVD 120

Query: 121 IVVQKPSQSFPDSS 131
           ++VQKP QS PDSS
Sbjct: 121 VLVQKPPQSTPDSS 127

The following BLAST results are available for this feature:

BLAST of Bhi09G002142 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	5.4e-10	40.34	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Bhi09G002142 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	7.5e-09	40.34	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of Bhi09G002142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E545	4.0e-61	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQS4	4.0e-61	88.89	uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P...	[more]
A0A6J1F906	4.5e-57	86.40	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IEI5	1.3e-56	86.40	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114765...	[more]
A0A6J1CGJ4	1.3e-48	74.63	uncharacterized protein At5g65660-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34291:SF7	PROTEIN, PUTATIVE-RELATED	coord: 5..125
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002142	Bhi09M002142	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane