Bhi09G002043 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002043
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr9: 65595139 .. 65595411 (-)
RNA-Seq Expression	Bhi09G002043
Synteny	Bhi09G002043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAGCAGTTTATGAATGTCTACGTAGTAGAATTGATTTTACCAAAGATGATGAAATTTCCAACCATTTATGCATTAGAGAGACCGAGAGTCACCCAGTCAAAATATGCAGAATTTCTGACTTTTCGCGAAAGATTAGATCCAGTAACCAGGGGTCTATGGTTAACCGATATTGCACATCATCATTTAGCCATTACTATTCTTTTCCTGATAGCGGGTCATATGTACAGGATCAACTGGGGCATTGATCATGGTATAAAAGAGATTTGA

mRNA sequence

ATGGTAGAGCAGTTTATGAATGTCTACGTAGTAGAATTGATTTTACCAAAGATGATGAAATTTCCAACCATTTATGCATTAGAGAGACCGAGAGTCACCCAGTCAAAATATGCAGAATTTCTGACTTTTCGCGAAAGATTAGATCCAGTAACCAGGGGTCTATGGTTAACCGATATTGCACATCATCATTTAGCCATTACTATTCTTTTCCTGATAGCGGGTCATATGTACAGGATCAACTGGGGCATTGATCATGGTATAAAAGAGATTTGA

Coding sequence (CDS)

ATGGTAGAGCAGTTTATGAATGTCTACGTAGTAGAATTGATTTTACCAAAGATGATGAAATTTCCAACCATTTATGCATTAGAGAGACCGAGAGTCACCCAGTCAAAATATGCAGAATTTCTGACTTTTCGCGAAAGATTAGATCCAGTAACCAGGGGTCTATGGTTAACCGATATTGCACATCATCATTTAGCCATTACTATTCTTTTCCTGATAGCGGGTCATATGTACAGGATCAACTGGGGCATTGATCATGGTATAAAAGAGATTTGA

Protein sequence

MVEQFMNVYVVELILPKMMKFPTIYALERPRVTQSKYAEFLTFRERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI

Homology

[Close]

BLAST of Bhi09G002043 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-23
Identity = 58/106 (54.72%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  + L R  + Q                 SKY+EFLTFR
Sbjct: 221 INQFLNAGVD----PKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

[Close]

BLAST of Bhi09G002043 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 33  TQSKYAEFLTFRERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
           +Q      LT      P T+ LWLTD+AHHHLAI ILFLIAGHMYR N+GI H IK++
Sbjct: 247 SQGSGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAILFLIAGHMYRTNFGIGHSIKDL 304

[Close]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-22
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 35  SKYAEFLTFRERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
           SKYAEFLTFR  LDPVT GLWLTDIAHHHLAI I+FLIAGHMYR NWGI HG+KEI
Sbjct: 267 SKYAEFLTFRGGLDPVTGGLWLTDIAHHHLAIAIIFLIAGHMYRTNWGIGHGLKEI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot
Match: A4QKT1 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Crucihimalaya wallichii OX=78192 GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-22
Identity = 59/106 (55.66%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  Y L R  + Q                 SKY+EFLTFR
Sbjct: 221 INQFLNAGVD----PKEIPLPHEYILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot
Match: A1EA08 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Agrostis stolonifera OX=63632 GN=psaA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 35  SKYAEFLTFRERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
           SKYAEFLTFR  LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HG+K+I
Sbjct: 267 SKYAEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 59/106 (55.66%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  + L R  + Q                 SKYAEFLTFR
Sbjct: 221 INQFLNAGVD----PKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot
Match: Q06GZ7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Drimys granadensis OX=224735 GN=psaA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 35  SKYAEFLTFRERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
           SKYAEFLTFR  LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HG+K+I
Sbjct: 267 SKYAEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL
Match: A0A291EXW4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lobelia galpinii OX=2041126 GN=psaA PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 60/106 (56.60%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+NV V     PK +  P  + L R  +TQ                 SKYAEFLTFR
Sbjct: 221 INQFLNVGVD----PKEIPLPHEFILNRDLLTQLYPSFAEGATPFFTLNWSKYAEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HG+K+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL
Match: A0A0S0ZIS8 (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Desmostachys planchoniana OX=1705839 GN=psaA PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  + L R  +TQ                 SKYAEFLTFR
Sbjct: 219 INQFLNAGVD----PKEIPLPHEFILNRDLLTQLYPSFAEGATPFFTLNWSKYAEFLTFR 278

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HG+KEI
Sbjct: 279 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKEI 320

[Close]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL
Match: A0A1D0CLY3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acacia scirpifolia OX=1174885 GN=psaA PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  + L R  +TQ                 SKYAEFLTFR
Sbjct: 221 INQFLNAGVD----PKEIPLPHEFILNRDLLTQLYPSFAEGATPFFTLNWSKYAEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL
Match: A0A1D0BYD8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acacia cyclops OX=546665 GN=psaA PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+N  V     PK +  P  + L R  +TQ                 SKYAEFLTFR
Sbjct: 221 INQFLNAGVD----PKEIPLPHEFILNRDLLTQLYPSFAEGATPFFTLNWSKYAEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

[Close]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL
Match: A0A1C7D4C6 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Robinia pseudoacacia OX=35938 GN=psaA PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 60/106 (56.60%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 2   VEQFMNVYVVELILPKMMKFPTIYALERPRVTQ-----------------SKYAEFLTFR 61
           + QF+NV V     PK +  P  + L R  + Q                 SKYAEFLTFR
Sbjct: 221 INQFLNVGVD----PKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYAEFLTFR 280

Query: 62  ERLDPVTRGLWLTDIAHHHLAITILFLIAGHMYRINWGIDHGIKEI 91
             LDPVT GLWLTDIAHHHLAI ILFLIAGHMYR NWGI HGIK+I
Sbjct: 281 GGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDI 322

The following BLAST results are available for this feature:

BLAST of Bhi09G002043 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	3.8e-23	54.72	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	4.2e-14	58.62	Photosystem I, PsaA/PsaB protein	[more]

BLAST of Bhi09G002043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70Y03	1.8e-22	85.71	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
A4QKT1	1.8e-22	55.66	Photosystem I P700 chlorophyll a apoprotein A1 OS=Crucihimalaya wallichii OX=781...	[more]
A1EA08	2.4e-22	85.71	Photosystem I P700 chlorophyll a apoprotein A1 OS=Agrostis stolonifera OX=63632 ...	[more]
Q2QD89	2.4e-22	55.66	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q06GZ7	2.4e-22	85.71	Photosystem I P700 chlorophyll a apoprotein A1 OS=Drimys granadensis OX=224735 G...	[more]

BLAST of Bhi09G002043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A291EXW4	1.4e-20	56.60	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lobelia galpinii OX=2041126 GN...	[more]
A0A0S0ZIS8	1.8e-20	56.60	Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Desmostachys planch...	[more]
A0A1D0CLY3	2.3e-20	56.60	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acacia scirpifolia OX=1174885 ...	[more]
A0A1D0BYD8	2.3e-20	56.60	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acacia cyclops OX=546665 GN=ps...	[more]
A0A1C7D4C6	3.0e-20	56.60	Photosystem I P700 chlorophyll a apoprotein A1 OS=Robinia pseudoacacia OX=35938 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 13..90 e-value: 1.9E-25 score: 91.0
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 33..90
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 34..90 e-value: 2.8E-24 score: 85.4
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF60	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 34..90
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 34..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002043	Bhi09M002043	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0046872	metal ion binding