Bhi09G001977 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001977
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionDDT domain-containing protein DDR4 isoform X1
Locationchr9: 64059971 .. 64060368 (+)
RNA-Seq ExpressionBhi09G001977
SyntenyBhi09G001977
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCACACGCACAGTAGAAAAAAGGAAATCAGAACAATGTCTCTGGAAATAGTGGTGAGAGCAGCAATAATGACACTAGAAGCAACACGAGCAAAGAAGCTGATCTTGATAGTGCTGATGATATCAATAAGGAATATGAGGACAAAGATGACGGTAACGACGATTCAGATTCAAATTACTCAAATGCAAAATAGAAGGATGAAATGGTACATTCCGAAAGAGAGACCGATGTTGAAAATCCCGCACTGGTGTGCAGTAAGAATCTGGATGGAAGCAATAACCATATGGGCAATGAAAATAGAAAGGTGGGTGCCAAAAGTAGGTTGAGACAAAGACCAGTTCTTAACTCTGCTCTTGATGCGGTTGTACCTGATTCAGATGATGATGAAAATTGA

mRNA sequence

ATGCATCACACGCACAGTAGAAAAAAGGAAATCAGAACAATGTCTCTGGAAATAGTGAAGGATGAAATGGTACATTCCGAAAGAGAGACCGATGTTGAAAATCCCGCACTGGTGTGCAGTAAGAATCTGGATGGAAGCAATAACCATATGGGCAATGAAAATAGAAAGGTGGGTGCCAAAAGTAGGTTGAGACAAAGACCAGTTCTTAACTCTGCTCTTGATGCGGTTGTACCTGATTCAGATGATGATGAAAATTGA

Coding sequence (CDS)

ATGCATCACACGCACAGTAGAAAAAAGGAAATCAGAACAATGTCTCTGGAAATAGTGAAGGATGAAATGGTACATTCCGAAAGAGAGACCGATGTTGAAAATCCCGCACTGGTGTGCAGTAAGAATCTGGATGGAAGCAATAACCATATGGGCAATGAAAATAGAAAGGTGGGTGCCAAAAGTAGGTTGAGACAAAGACCAGTTCTTAACTCTGCTCTTGATGCGGTTGTACCTGATTCAGATGATGATGAAAATTGA

Protein sequence

MHHTHSRKKEIRTMSLEIVKDEMVHSERETDVENPALVCSKNLDGSNNHMGNENRKVGAKSRLRQRPVLNSALDAVVPDSDDDEN
Homology
[Close]
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match: A0A5D3E750 (DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006990 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 20  KDEMVHSERETDVENPALVCSKNLDGSNNHM-GNENRKVGAKSRLRQRPVLNSALDAVVP 79
           K+E +HSE+ET+VE PA +CSK  D S NHM  NENRKV AKSRLRQRPVLNSALD VVP
Sbjct: 456 KNETLHSEQETNVEKPAELCSKRPDRSTNHMSNNENRKVSAKSRLRQRPVLNSALDGVVP 515

Query: 80  DSDDD 84
           DSDD+
Sbjct: 516 DSDDE 520

[Close]
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match: A0A5A7T999 (DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 20  KDEMVHSERETDVENPALVCSKNLDGSNNHM-GNENRKVGAKSRLRQRPVLNSALDAVVP 79
           K+E +HSE+ET+VE PA +CSK  D S NHM  NENRKV AKSRLRQRPVLNSALD VVP
Sbjct: 428 KNETLHSEQETNVEKPAELCSKRPDRSTNHMSNNENRKVSAKSRLRQRPVLNSALDGVVP 487

Query: 80  DSDDD 84
           DSDD+
Sbjct: 488 DSDDE 492

[Close]
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match: A0A1S4E5K9 (DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503782 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 20  KDEMVHSERETDVENPALVCSKNLDGSNNHM-GNENRKVGAKSRLRQRPVLNSALDAVVP 79
           K+E +HSE+ET+VE PA +CSK  D S NHM  NENRKV AKSRLRQRPVLNSALD VVP
Sbjct: 428 KNETLHSEQETNVEKPAELCSKRPDRSTNHMSNNENRKVSAKSRLRQRPVLNSALDGVVP 487

Query: 80  DSDDD 84
           DSDD+
Sbjct: 488 DSDDE 492

[Close]
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match: A0A0A0LGR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881570 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0 

Query: 20  KDEMVHSERETDVENPALVCSKNLDGSNNHM-GNENRKVGAKSRLRQRPVLNSALDAVVP 79
           K+E +HSE+ET+VE PA VCSK  D S NHM  NE RKV AKSRLRQRPVLNSALD VVP
Sbjct: 430 KNETLHSEQETEVEKPAEVCSKRPDKSMNHMSNNETRKVSAKSRLRQRPVLNSALDGVVP 489

Query: 80  DSDDD 84
           DSDD+
Sbjct: 490 DSDDE 494

[Close]
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match: A0A6J1CMT4 (DDT domain-containing protein DDR4 OS=Momordica charantia OX=3673 GN=LOC111012575 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-11
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 24  VHSERE--TDVENPALVCSKNLDGSNNHMGNENRKVGAKSRLRQRPVLNSALDAV-VPDS 83
           +HSE++  T+VE P   CSK  D + +H GNENRKVGAKSRLRQRPVLNSALD V VPDS
Sbjct: 437 LHSEKQAATNVEMPVGGCSKRQDRNRSHSGNENRKVGAKSRLRQRPVLNSALDPVAVPDS 496

The following BLAST results are available for this feature:
BLAST of Bhi09G001977 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001977 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001977 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E7503.6e-1573.85DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9993.6e-1573.85DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S4E5K93.6e-1573.85DDT domain-containing protein DDR4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A0A0LGR51.1e-1473.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881570 PE=4 SV=1[more]
A0A6J1CMT47.1e-1168.25DDT domain-containing protein DDR4 OS=Momordica charantia OX=3673 GN=LOC11101257... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001977Bhi09M001977mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0031213 RSF complex