Bhi09G001500 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001500
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Poly(A)-specific ribonuclease
Location	chr9: 48818602 .. 48819238 (+)
RNA-Seq Expression	Bhi09G001500
Synteny	Bhi09G001500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCATTCGGCAAGTCTGATATTGTAATCTCTTTCAAGAATTGATCGTTCTTAACAACTGTTTTTCAAAGTTTTTAGTGGTTGCTTTCGATACCGAGTTCCCTGGCTTTCTTCGATCCACCCCGAGGGTGCTCTAGAGGAACCATTCTACAAAGATTTAAAATTCAATGTAAATCGCTTGAAGCTTCTTCAATTGGGTATTACTTTGGCCGATGAGAATGGGAATATTGGCATGATATAGGAGTTCAATTTCAGTGATTTTGGTGAAGCTAATGACCCTCGTAGTCCTTCGTCCATACAATTCTTAAAAAACGAAGGGTTTGAAAGAAGGATTACATCTTCTGAGTTTCAAAGGGCATTTTGGCCCATTTGCTGTAGTGGTCGAATCACCAAATGGGTCACCTTCTATAGCTTCTATGATGTCGCTTACCTACTCAACCCAATGATGATCAAATCCATTATGGATTCCATCATGGTGTTCGCTGCCAAGGCACAATGTCTCTTAGGCACAGTTGTTAACCTCAAGCACATGGCTGCTACTGCCACTACTTACAAAATGGCGAACTTGGACTTGAAAAGTTGGCCTAGTTACTCAATGTGGAGTGTAACGGCCTCGCCATTACATTGGTTCTGA

mRNA sequence

ATGGGATCATTCGGCAAGTCTGATATTGAGTTCAATTTCAGTGATTTTGGTGAAGCTAATGACCCTCGTAGTCCTTCGTCCATACAATTCTTAAAAAACGAAGGGTTTGAAAGAAGGATTACATCTTCTGAGTTTCAAAGGGCATTTTGGCCCATTTGCTGTAGTGGTCGAATCACCAAATGGGTCACCTTCTATAGCTTCTATGATGTCGCTTACCTACTCAACCCAATGATGATCAAATCCATTATGGATTCCATCATGGTGTTCGCTGCCAAGGCACAATGTCTCTTAGGCACAGTTGTTAACCTCAAGCACATGGCTGCTACTGCCACTACTTACAAAATGGCGAACTTGGACTTGAAAAGTTGGCCTAGTTACTCAATGTGGAGTGTAACGGCCTCGCCATTACATTGGTTCTGA

Coding sequence (CDS)

ATGGGATCATTCGGCAAGTCTGATATTGAGTTCAATTTCAGTGATTTTGGTGAAGCTAATGACCCTCGTAGTCCTTCGTCCATACAATTCTTAAAAAACGAAGGGTTTGAAAGAAGGATTACATCTTCTGAGTTTCAAAGGGCATTTTGGCCCATTTGCTGTAGTGGTCGAATCACCAAATGGGTCACCTTCTATAGCTTCTATGATGTCGCTTACCTACTCAACCCAATGATGATCAAATCCATTATGGATTCCATCATGGTGTTCGCTGCCAAGGCACAATGTCTCTTAGGCACAGTTGTTAACCTCAAGCACATGGCTGCTACTGCCACTACTTACAAAATGGCGAACTTGGACTTGAAAAGTTGGCCTAGTTACTCAATGTGGAGTGTAACGGCCTCGCCATTACATTGGTTCTGA

Protein sequence

MGSFGKSDIEFNFSDFGEANDPRSPSSIQFLKNEGFERRITSSEFQRAFWPICCSGRITKWVTFYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLKSWPSYSMWSVTASPLHWF

Homology

[Close]

BLAST of Bhi09G001500 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-05
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 10  EFNFSDFGEANDPRSPSSIQFLKNEGFERRITSSE----FQRAFWP----ICCSGRITKW 69
           E NFS+FG+ +D R+  SI+FL+  G + +    E    F   F+P    +  S +  ++
Sbjct: 88  EINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEF 147

Query: 70  VTFYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMA 108
           VTF   YD AY L+ +    + ++   FA +   + G V + K MA
Sbjct: 148 VTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMA 193

[Close]

BLAST of Bhi09G001500 vs. ExPASy TrEMBL
Match: A0A5A7T5A7 (Putative CCR4-associated factor 1-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005440 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 11  FNFSDFGEANDPRSPSSIQFLKNEGF-------ERRITSSEFQRAFWPICCSGRITKWVT 70
           F FSDF E  D  SP+SIQ+LKN  +       + RI S+EF+RAF PI  S RITKW+T
Sbjct: 84  FTFSDFDEQTDFSSPTSIQYLKNNKWFEFKKHRKYRIPSAEFRRAFLPIFSSNRITKWIT 143

Query: 71  FYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLK 122
           F+  YDVAYLL  MMI+++ +S++ FA  AQ  LGTV +LKHM           L LK
Sbjct: 144 FHGIYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTVNDLKHMICNCEHLMNGELGLK 201

[Close]

BLAST of Bhi09G001500 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 11  FNFSDFGEANDPRSPSSIQFLKN-EGFERR------ITSSEFQRAFWPICCSGRITKWVT 70
           F FSDF E  D  SP+SIQ+LKN +GFE +      I S+EF+RAF PI  S RITKW+T
Sbjct: 84  FTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGIPSAEFRRAFLPIFSSNRITKWIT 143

Query: 71  FYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLK 122
           F+  YDVAYLL  MMI+++ +S++ FA  AQ  LGTV +LKHM           L LK
Sbjct: 144 FHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLK 201

[Close]

BLAST of Bhi09G001500 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 11  FNFSDFGEANDPRSPSSIQFLKN-EGFERR------ITSSEFQRAFWPICCSGRITKWVT 70
           F FSDF E  D  SP+SIQ+LKN +GFE +      I S+EF+RAF PI  S RITKW+T
Sbjct: 84  FTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGIPSAEFRRAFLPIFSSNRITKWIT 143

Query: 71  FYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLK 122
           F+  YDVAYLL  MMI+++ +S++ FA  AQ  LGTV +LKHM           L LK
Sbjct: 144 FHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLK 201

[Close]

BLAST of Bhi09G001500 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 11  FNFSDFGEANDPRSPSSIQFLKN-EGFERR------ITSSEFQRAFWPICCSGRITKWVT 70
           F FSDF E  D  SP+SIQ+LKN +GFE +      I S+EF+RAF PI  S RITKW+T
Sbjct: 84  FTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGIPSAEFRRAFLPIFSSNRITKWIT 143

Query: 71  FYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLK 122
           F+  YDVAYLL  MMI+++ +S++ FA  AQ  LGTV +LKHM           L LK
Sbjct: 144 FHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLK 201

[Close]

BLAST of Bhi09G001500 vs. ExPASy TrEMBL
Match: A0A1S3CRS2 (putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103504009 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 11  FNFSDFGEANDPRSPSSIQFLKNEGF-------ERRITSSEFQRAFWPICCSGRITKWVT 70
           F FSDF E  D  SP+SIQ+LKN  +       + RI S+EF+RAF PI  S RITKW+T
Sbjct: 84  FTFSDFDEQTDFSSPTSIQYLKNNKWFEFKKHRKYRIPSAEFRRAFLPIFSSNRITKWIT 143

Query: 71  FYSFYDVAYLLNPMMIKSIMDSIMVFAAKAQCLLGTVVNLKHMAATATTYKMANLDLK 122
           F+  YDVAYLL  MMI+++ +S++ FA  AQ  LGTV +LKHM           L LK
Sbjct: 144 FHGIYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTVNDLKHMICNCEHLMNGELGLK 201

The following BLAST results are available for this feature:

BLAST of Bhi09G001500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	7.2e-05	31.13	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Bhi09G001500 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi09G001500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5A7	4.4e-18	50.00	Putative CCR4-associated factor 1-like protein 8 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7TN62	4.4e-18	51.69	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D333	4.4e-18	51.69	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	4.4e-18	51.69	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]
A0A1S3CRS2	4.4e-18	50.00	putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103504...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..133 e-value: 4.4E-16 score: 60.6
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 9..113
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 9..113
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001500	Bhi09M001500	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity