Bhi09G001430 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001430
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr9: 46355542 .. 46355736 (+)
RNA-Seq ExpressionBhi09G001430
SyntenyBhi09G001430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGATGAAGATCGAGAGGAGATGGATTTGAAAGCTCCAAGTGCAATTAGGCTAAATTTGGATAATAATGTTCTTGTAAATTTGCATGGAATTACAATCACCAAAGAGCTTTGGGAGAAGCTTAAAGCAATGTATCAAGCAAAAAGCATCTCAAATCGATTGTGCCTGAATGAGAAGTTTCACACCTTGTAA

mRNA sequence

ATGAGCGATGAAGATCGAGAGGAGATGGATTTGAAAGCTCCAAGTGCAATTAGGCTAAATTTGGATAATAATGTTCTTGTAAATTTGCATGGAATTACAATCACCAAAGAGCTTTGGGAGAAGCTTAAAGCAATGTATCAAGCAAAAAGCATCTCAAATCGATTGTGCCTGAATGAGAAGTTTCACACCTTGTAA

Coding sequence (CDS)

ATGAGCGATGAAGATCGAGAGGAGATGGATTTGAAAGCTCCAAGTGCAATTAGGCTAAATTTGGATAATAATGTTCTTGTAAATTTGCATGGAATTACAATCACCAAAGAGCTTTGGGAGAAGCTTAAAGCAATGTATCAAGCAAAAAGCATCTCAAATCGATTGTGCCTGAATGAGAAGTTTCACACCTTGTAA

Protein sequence

MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEKFHTL
Homology
BLAST of Bhi09G001430 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 21/64 (32.81%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1   MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
           M  ED  ++D +A SAIRL+L ++V+ N+      + +W +L+++Y +K+++N+L L ++
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  FHTL 65
            + L
Sbjct: 107 LYAL 110

BLAST of Bhi09G001430 vs. ExPASy TrEMBL
Match: A0A6P9EJZ4 (uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
          MSDED E++DL+A SAIRL L  NVL N+HGI+  KELWEKL+ +YQ K +SNR+ L E+
Sbjct: 33 MSDEDWEDLDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKEQ 92

Query: 61 FHTL 65
          FHTL
Sbjct: 93 FHTL 96

BLAST of Bhi09G001430 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1   MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
           MS ED EEMDL+A SAIR +L  N+L N+H I+  KELWEKL+A+YQAK ISNRL L E+
Sbjct: 369 MSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKEQ 428

Query: 61  FHTL 65
           FHTL
Sbjct: 429 FHTL 432

BLAST of Bhi09G001430 vs. ExPASy TrEMBL
Match: A0A444X3K2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.7e-12
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1   MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
           + DE+ EE+DL+A SAIRL L  NVL N+ G+ I KELW+KL+ +YQAK ISNRL L E+
Sbjct: 87  IKDEEWEELDLRAASAIRLCLAKNVLANVQGMKIAKELWDKLEGLYQAKGISNRLLLKEQ 146

Query: 61  FHTL 65
           FH L
Sbjct: 147 FHNL 150

BLAST of Bhi09G001430 vs. ExPASy TrEMBL
Match: V4T614 (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023471mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
          +SDED EE+D +A SAIRL L  NVL N+  I   KELWEKL+ +YQ KSISNRL L E+
Sbjct: 28 ISDEDWEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKEQ 87

Query: 61 FHTL 65
          FHTL
Sbjct: 88 FHTL 91

BLAST of Bhi09G001430 vs. ExPASy TrEMBL
Match: A0A444XD23 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g095090 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1   MSDEDREEMDLKAPSAIRLNLDNNVLVNLHGITITKELWEKLKAMYQAKSISNRLCLNEK 60
           M DE+ EE+DL+A SAI L L  NVL N+ G+   KELW+KL+ +YQAK ISNRL L E+
Sbjct: 320 MKDEELEELDLRAASAIHLCLAKNVLANVQGMKTAKELWDKLEGLYQAKGISNRLLLKEQ 379

Query: 61  FHTL 65
           FH L
Sbjct: 380 FHNL 383

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
P109781.2e-0432.81Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6P9EJZ45.2e-1464.06uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 P... [more]
A0A6J1CG826.7e-1467.19uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A444X3K23.7e-1260.94Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1[more]
V4T6141.1e-1164.06Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023... [more]
A0A444XD231.4e-1159.38Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g095090 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 8..64
e-value: 3.3E-10
score: 39.9
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 1..64
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001430Bhi09M001430mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding