Bhi09G001422 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001422
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	chr9: 45917365 .. 45917754 (-)
RNA-Seq Expression	Bhi09G001422
Synteny	Bhi09G001422

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCACCAACAAGCCTCTCGGCAAGCGAAGACGGGGGAGTTTGAAGACACTCAAATCTACCGGGTGAAGAAGAAGCAACGAAACTCCACAAATCTTATTGGAAAGAGAGGGATTCGACCCTCGGAAACAAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTTCAACCACTTGGCCATCTCTCCTACAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAAAGGGGGAGGTCATAAGCGTCAGTCTATACCGTTAAAATCGATTTTCGACGGGATACATCCAGCAAGAAATATATCGAGAGTTAGTGCCGGGTTTAGCCGGAAATCAAAGTTTATCAGAAGCTTGAAGGTTTGTGCGCCAGCCATACGTCAGCTTGAACTGTGA

mRNA sequence

GACCACCAACAAGCCTCTCGGCAAGCGAAGACGGGGGAGTTTGAAGACACTCAAATCTACCGGGTGAAGAAGAAGCAACGAAACTCCACAAATCTTATTGGAAAGAGAGGGATTCGACCCTCGGAAACAAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTTCAACCACTTGGCCATCTCTCCTACAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAAAGGGGGAGGTCATAAGCGTCAGTCTATACCGTTAAAATCGATTTTCGACGGGATACATCCAGCAAGAAATATATCGAGAGTTAGTGCCGGGTTTAGCCGGAAATCAAAGTTTATCAGAAGCTTGAAGGTTTGTGCGCCAGCCATACGTCAGCTTGAACTGTGA

Coding sequence (CDS)

GACCACCAACAAGCCTCTCGGCAAGCGAAGACGGGGGAGTTTGAAGACACTCAAATCTACCGGGTGAAGAAGAAGCAACGAAACTCCACAAATCTTATTGGAAAGAGAGGGATTCGACCCTCGGAAACAAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTTCAACCACTTGGCCATCTCTCCTACAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAAAGGGGGAGGTCATAAGCGTCAGTCTATACCGTTAAAATCGATTTTCGACGGGATACATCCAGCAAGAAATATATCGAGAGTTAGTGCCGGGTTTAGCCGGAAATCAAAGTTTATCAGAAGCTTGAAGGTTTGTGCGCCAGCCATACGTCAGCTTGAACTGTGA

Protein sequence

DHQQASRQAKTGEFEDTQIYRVKKKQRNSTNLIGKRGIRPSETKSLHSSSNATPFNHLAISPTGRNARGIITAGHKGGGHKRQSIPLKSIFDGIHPARNISRVSAGFSRKSKFIRSLKVCAPAIRQLEL

Homology

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BLAST of Bhi09G001422 vs. ExPASy Swiss-Prot
Match: Q06FM3 (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum OX=4031 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.5e-04
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 44 KSLHSSSNATPFNHLAISP----TGRNARGIITAGHKGGGHKR 83
          +++ S   + P NHL         GRNARGIITAGH+GGGHKR
Sbjct: 16 RAVDSQGKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKR 58

The following BLAST results are available for this feature:

BLAST of Bhi09G001422 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G001422 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06FM3	5.5e-04	53.49	50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum OX=4031 GN=rpl2-...	[more]

BLAST of Bhi09G001422 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001422	Bhi09M001422	mRNA