Bhi09G001421 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001421
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	NADH dehydrogenase subunit 4
Location	chr9: 45899854 .. 45900087 (+)
RNA-Seq Expression	Bhi09G001421
Synteny	Bhi09G001421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGCCGTGTTTCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATCAAGCTTTTCCTCTGCAGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTTGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCCCCTTCTCTTTACCTTTCTCGTCCCCTACCTTAG

mRNA sequence

ATGATCGCCGTGTTTCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATCAAGCTTTTCCTCTGCAGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTTGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCCCCTTCTCTTTACCTTTCTCGTCCCCTACCTTAG

Coding sequence (CDS)

ATGATCGCCGTGTTTCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATCAAGCTTTTCCTCTGCAGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTTGTCGATAGGAAAGCTCTGTTACGCACCAACGACGGCCCCTTCTCTTTACCTTTCTCGTCCCCTACCTTAG

Protein sequence

MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRALCSKPPTGGRPLSIGKLCYAPTTAPSLYLSRPLP

Homology

[Close]

BLAST of Bhi09G001421 vs. TAIR 10
Match: ATMG00580.1 (NADH dehydrogenase subunit 4 )

HSP 1 Score: 43.9 bits (102), Expect = 6.8e-05
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPM 25
           MIAVFRMLD LLFYV PESVPIPM
Sbjct: 130 MIAVFRMLDLLLFYVFPESVPIPM 153

[Close]

BLAST of Bhi09G001421 vs. ExPASy Swiss-Prot
Match: Q04050 (NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris OX=3711 GN=ND4 PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.6e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPM 25
           MIAVFRMLD LLFYV PESVPIPM
Sbjct: 130 MIAVFRMLDLLLFYVFPESVPIPM 153

[Close]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL
Match: A0A446K0Z9 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G146830 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRALCSKPPTGGRPLS 57
           MIAV  MLDPLLFYVL ESVPIPMLCG EHLLFAGIKLFLCR L SKPPTGG P S
Sbjct: 130 MIAVSCMLDPLLFYVLSESVPIPMLCGVEHLLFAGIKLFLCRGLVSKPPTGGPPSS 185

[Close]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL
Match: A0A7N0RCL1 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRALCSKPPTG 52
           MIAVFRMLDPLLFYVLPESVPIPMLCGAE+LLFAGIKLFLCR L  K P G
Sbjct: 130 MIAVFRMLDPLLFYVLPESVPIPMLCGAEYLLFAGIKLFLCRGLVQKTPYG 180

[Close]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL
Match: A0A5C7GR23 (Proton_antipo_M domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027770 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRALCSKPPTGGRPLSIGKL 60
           MIAVFRMLDPLLFYV PESVPIPMLCGAEHLLFAGIKLFLCR L        RP + G+ 
Sbjct: 595 MIAVFRMLDPLLFYVFPESVPIPMLCGAEHLLFAGIKLFLCRGLVHGYLLELRPTTTGQF 654

Query: 61  CYAPT 66
            +  T
Sbjct: 655 RFGAT 659

[Close]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL
Match: A0A5C7GPL9 (Proton_antipo_M domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_028283 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRALCSKPPTGGRPLSIGKL 60
           MIAVFRMLDPLLFYV PESVPIPMLCGAEHLLFAGIKLFLCR L        RP + G+ 
Sbjct: 130 MIAVFRMLDPLLFYVFPESVPIPMLCGAEHLLFAGIKLFLCRGLVHGYLLELRPTTTGQF 189

Query: 61  CYAPT 66
            +  T
Sbjct: 190 RFGAT 194

[Close]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL
Match: A0A5N6L0M4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025299 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 1   MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRAL 45
           MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCR L
Sbjct: 82  MIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGIKLFLCRGL 125

The following BLAST results are available for this feature:

BLAST of Bhi09G001421 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00580.1	6.8e-05	91.67	NADH dehydrogenase subunit 4	[more]

BLAST of Bhi09G001421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04050	9.6e-04	91.67	NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris OX=3711 GN=ND4 PE=...	[more]

BLAST of Bhi09G001421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A446K0Z9	1.3e-16	85.71	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G...	[more]
A0A7N0RCL1	2.5e-15	88.24	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A5C7GR23	1.6e-14	70.77	Proton_antipo_M domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62...	[more]
A0A5C7GPL9	1.6e-14	70.77	Proton_antipo_M domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62...	[more]
A0A5N6L0M4	2.1e-14	97.73	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025299 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 1..44
None	No IPR available	PANTHER	PTHR43507:SF15	PROTEIN, PUTATIVE-RELATED	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001421	Bhi09M001421	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0015990	electron transport coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048039	ubiquinone binding