Bhi09G001370 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001370
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Beta-galactosidase
Location	chr9: 43972531 .. 43973277 (+)
RNA-Seq Expression	Bhi09G001370
Synteny	Bhi09G001370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGAGCGATGCCCAACCACACTCCAACCGCAGACCAGCCAACATCTCAAGTGTAGATAGTGGTCGGCGAACAGATCCAGCCTTGTTCGGTGTTCGGCCAGGTCTAGTCATAGCTCAAACTATGTTCGACGACTATTCAGATCCGTTGACGACAACCAGACCTACCGATCAGTCGGGAACCTTCGCGCACAACAGGTCGGTCGATCTCCCAAAAGTTTTTGCACAACCCAGACGAGAGCTCCCAGCTGCCGCGACTTCGGATGAACTTCCAGCCGCGACTTCGAACCCTAAGGTAGTCGACCACATCGGGTTACGTGACCAATTGATGGCGTTTTCTGACCAGCAACCTCCGGAGGGTAGGATGATCGATCCTCTCTGACTACAGTGACGCCGATACAGTTGTTTTTCCGGTGAACTCTTCGGCCAGTCTAATGGGGGCATGTTCTGATGAGATTAAAAGCAGGTTTGTTTTCCTCCAGCAACAACTCGCTAAATTTGGGTCGGTTCTTGGTACAAACTCAAAAATGGTTCAACCAGAATCGTCAAATTTACAGCTAGGCTTTGAGAACCCGGTAAACTCTTTCCATTCTTTACCTGCTACAAATTTATTATCTGGATCAATAGGACACTCTGCAGGGATTATAATTGGAGAAAAGTTGAATGGCGAAAATTATTTTTCATGGTCTCAATCCATACGAATGGCTCTGGAAGGAAGACAAAAATTTGGCTATCTAACTAGGGAGATA

mRNA sequence

ATGTGAGCGATGCCCAACCACACTCCAACCGCAGACCAGCCAACATCTCAAGTGTAGATAGTGGTCGGCGAACAGATCCAGCCTTGTTCGGTGTTCGGCCAGGTCTAGTCATAGCTCAAACTATGTTCGACGACTATTCAGATCCGTTGACGACAACCAGACCTACCGATCAGTCGGGAACCTTCGCGCACAACAGGTCGGTCGATCTCCCAAAAGTTTTTGCACAACCCAGACGAGAGCTCCCAGCTGCCGCGACTTCGGATGAACTTCCAGCCGCGACTTCGAACCCTAAGGTAGTCGACCACATCGGGTTACGTGACCAATTGATGGCGTTTTCTGACCAGCAACCTCCGGAGGTTGTTTTTCCGGTGAACTCTTCGGCCAGTCTAATGGGGGCATGTTCTGATGAGATTAAAAGCAGGTTTGTTTTCCTCCAGCAACAACTCGCTAAATTTGGGTCGGTTCTTGGTACAAACTCAAAAATGGTTCAACCAGAATCGTCAAATTTACAGCTAGGCTTTGAGAACCCGGTAAACTCTTTCCATTCTTTACCTGCTACAAATTTATTATCTGGATCAATAGGACACTCTGCAGGGATTATAATTGGAGAAAAGTTGAATGGCGAAAATTATTTTTCATGGTCTCAATCCATACGAATGGCTCTGGAAGGAAGACAAAAATTTGGCTATCTAACTAGGGAGATA

Coding sequence (CDS)

ATGTGAGCGATGCCCAACCACACTCCAACCGCAGACCAGCCAACATCTCAAGTGTAGATAGTGGTCGGCGAACAGATCCAGCCTTGTTCGGTGTTCGGCCAGGTCTAGTCATAGCTCAAACTATGTTCGACGACTATTCAGATCCGTTGACGACAACCAGACCTACCGATCAGTCGGGAACCTTCGCGCACAACAGGTCGGTCGATCTCCCAAAAGTTTTTGCACAACCCAGACGAGAGCTCCCAGCTGCCGCGACTTCGGATGAACTTCCAGCCGCGACTTCGAACCCTAAGGTAGTCGACCACATCGGGTTACGTGACCAATTGATGGCGTTTTCTGACCAGCAACCTCCGGAGGTTGTTTTTCCGGTGAACTCTTCGGCCAGTCTAATGGGGGCATGTTCTGATGAGATTAAAAGCAGGTTTGTTTTCCTCCAGCAACAACTCGCTAAATTTGGGTCGGTTCTTGGTACAAACTCAAAAATGGTTCAACCAGAATCGTCAAATTTACAGCTAGGCTTTGAGAACCCGGTAAACTCTTTCCATTCTTTACCTGCTACAAATTTATTATCTGGATCAATAGGACACTCTGCAGGGATTATAATTGGAGAAAAGTTGAATGGCGAAAATTATTTTTCATGGTCTCAATCCATACGAATGGCTCTGGAAGGAAGACAAAAATTTGGCTATCTAACTAGGGAGATA

Protein sequence

VSDAQPHSNRRPANISSVDSGRRTDPALFGVRPGLVIAQTMFDDYSDPLTTTRPTDQSGTFAHNRSVDLPKVFAQPRRELPAAATSDELPAATSNPKVVDHIGLRDQLMAFSDQQPPEVVFPVNSSASLMGACSDEIKSRFVFLQQQLAKFGSVLGTNSKMVQPESSNLQLGFENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQKFGYLTREI

Homology

[Close]

BLAST of Bhi09G001370 vs. ExPASy TrEMBL
Match: A0A5D3D424 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002330 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-11
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 167 SNLQLGFENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQK 226
           + L +  +NPV SF +LP +N ++GS+G S G    EKLNG+NYFSWSQSI++ LEGR +
Sbjct: 105 TELPMHSKNPVTSFSNLP-SNYITGSLGSSTGNFSSEKLNGQNYFSWSQSIKIFLEGRHQ 164

Query: 227 FGYLTREI 235
           FG+LT EI
Sbjct: 165 FGFLTGEI 171

[Close]

BLAST of Bhi09G001370 vs. ExPASy TrEMBL
Match: A0A5D3BS79 (LRR receptor-like serine/threonine-protein kinase FEI 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001110 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-11
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 174 ENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQKFGYLTRE 233
           +NPV SF +LP +N ++GS+  S G   GEKLNG+NYFSWSQSI+M LEGR +FG+LT E
Sbjct: 293 KNPVTSFPNLP-SNYITGSLDSSTGNFFGEKLNGQNYFSWSQSIKMFLEGRHQFGFLTGE 351

[Close]

BLAST of Bhi09G001370 vs. ExPASy TrEMBL
Match: A0A5D3C7S0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001000 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 167 SNLQLGFENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQK 226
           + L +  +NPV SF +LP +N ++ S+G S G   GEKLNG+NYFSWSQSI+M LEGR +
Sbjct: 110 TKLPMYSKNPVTSFPNLP-SNYITSSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEGRHQ 169

Query: 227 FGYLTRE 234
           F +LTRE
Sbjct: 170 FDFLTRE 175

[Close]

BLAST of Bhi09G001370 vs. ExPASy TrEMBL
Match: A0A5A7SJ13 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001430 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 167 SNLQLGFENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQK 226
           + L +  +NPV SF +LP +N ++ S+G S G   GEKLNG+NYFSWSQSI+M LEGR +
Sbjct: 110 TKLPMYSKNPVTSFPNLP-SNYITSSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEGRHQ 169

Query: 227 FGYLTRE 234
           F +LTRE
Sbjct: 170 FDFLTRE 175

[Close]

BLAST of Bhi09G001370 vs. ExPASy TrEMBL
Match: A0A5D3DC56 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00470 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 167 SNLQLGFENPVNSFHSLPATNLLSGSIGHSAGIIIGEKLNGENYFSWSQSIRMALEGRQK 226
           + L +  +NPV SF +   +N ++GS+G S G   GEKLNG+NYFSWSQSI+M LEGR +
Sbjct: 57  TELPMYSKNPVTSFPN-SQSNYITGSLGSSTGNFSGEKLNGQNYFSWSQSIKMFLEGRHQ 116

Query: 227 FGYLTRE 234
           FG+LTRE
Sbjct: 117 FGFLTRE 122

The following BLAST results are available for this feature:

BLAST of Bhi09G001370 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G001370 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G001370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D424	5.1e-11	55.88	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3BS79	8.8e-11	61.67	LRR receptor-like serine/threonine-protein kinase FEI 2 isoform X1 OS=Cucumis me...	[more]
A0A5D3C7S0	1.1e-10	56.72	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G0...	[more]
A0A5A7SJ13	1.1e-10	56.72	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G0...	[more]
A0A5D3DC56	1.1e-10	56.72	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G0...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 199..230 e-value: 7.9E-9 score: 35.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001370	Bhi09M001370	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0035639	purine ribonucleoside triphosphate binding
molecular_function	GO:0032555	purine ribonucleotide binding