Bhi09G001232 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001232
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr9: 38546371 .. 38547519 (+)
RNA-Seq ExpressionBhi09G001232
SyntenyBhi09G001232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGGTACAAGCAACGATTGGCAGGTTGAGTGATGACTATGAGGGCTTAGTCTAAGAAACACTAAGATCAGTGTTGCTGCAAAAGAGATGATCAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTCAGGACAATTGAAAAGGTAGTCATTAGTATGCATCTATTAGCTCCCTATCCACTGCGCCTGTGCATGGCATTCATGGATTGAAGGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG

mRNA sequence

ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG

Coding sequence (CDS)

ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG

Protein sequence

MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAECARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEMLIDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKPCFLCNGPQ
Homology
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66
Identity = 146/306 (47.71%), Postives = 185/306 (60.46%), Query Frame = 0

Query: 45  DTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAE------ 104
           +  + N  + + K LG +  K++  +  +V NL KF+E ELH L K ++ +RAE      
Sbjct: 12  NVEISNAAKEMIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHA 71

Query: 105 --------------------CARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIA 164
                                 +   Y+GTRN+ MVENF+FGL+QY+K + +I DGAKIA
Sbjct: 72  SNGNASTSTSCTMVGTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKIA 131

Query: 165 NTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQ 224
           N PNFLR + QLWWRRKH E E D   L+TWEQFK+E RKHF+PHN DM ++ KLRR RQ
Sbjct: 132 NAPNFLRESAQLWWRRKHAEWEKDRTILQTWEQFKAELRKHFVPHNADMEARGKLRRLRQ 191

Query: 225 TGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEML 284
            GSIP+ IK FT LMLEI+DLS K+ LFHF+D LK+W +IELDR NV+TLDD I  A  L
Sbjct: 192 IGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDDLKDWAKIELDRRNVRTLDDAIAAAGAL 251

Query: 285 IDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKP--C 323
           ID  +K KK + DEGE  E  ++      GN+K   K  K        PF  K   P  C
Sbjct: 252 IDIYSKEKKRRVDEGEAFEPKKE------GNSKQDGKYGKA-------PFANKDTIPPTC 304

BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7SY30 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00560 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 7.7e-66
Identity = 144/306 (47.06%), Postives = 182/306 (59.48%), Query Frame = 0

Query: 45  DTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAEC----- 104
           +  + N  + + K LG +  K++  L  +V NL KF+E ELH L K ++ +RAEC     
Sbjct: 12  NVEISNAAKEMIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHA 71

Query: 105 ---------------------ARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIA 164
                                 +   Y+GTRN+ MVENF+FGL+QY+K + ++ DGAKIA
Sbjct: 72  SNGNASTSTSCTVVGTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKIA 131

Query: 165 NTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQ 224
           N PNFL  + QLWW RKH E E D   L TW QFK+E RKHF+ HN +M ++ KLRR RQ
Sbjct: 132 NAPNFLHESAQLWWHRKHAEWEKDRTILHTWRQFKAELRKHFVLHNANMEARGKLRRLRQ 191

Query: 225 TGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEML 284
            GSIP+ IK FT LMLEI+DLS K+ LFHF+DGLK+W +IELDR NV+TLDD I  A+ L
Sbjct: 192 IGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDGLKDWAKIELDRRNVRTLDDAIAAAKAL 251

Query: 285 IDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKP--C 323
           ID   K KKT+ DEGE  E  E        N+K  EK  K        PF  +   P  C
Sbjct: 252 IDIYFKEKKTRVDEGEAFEPKE-------WNSKQDEKYGKT-------PFANRDTTPPTC 303

BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7SJU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002790 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 151/359 (42.06%), Postives = 207/359 (57.66%), Query Frame = 0

Query: 1   MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLGKKLG 60
           M++EEG+ S +EQVIEGS T   K +HS ++++KSK    R+HVDT L NLEQ +     
Sbjct: 79  MSAEEGHTSPVEQVIEGSVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDV-- 138

Query: 61  RTLNKKVRSLFSDVDNLCKFMEGELHELCKE-------LENIRAEC-------------- 120
             L ++++ L S V  L  F+EGELH L  +       L+ +  EC              
Sbjct: 139 -QLAEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPSTST 198

Query: 121 ------------ARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIANTPNFLRAT 180
                        +   Y+G RN+ +V+NF+FGL++YF  + V  D A+I + P FLR  
Sbjct: 199 HPTTSGTSNIKVPKPDVYNGVRNATIVDNFLFGLERYFVALGVRDDEARINHAPTFLRDA 258

Query: 181 TQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQTGSIPECIK 240
            QLWWRRK+ ++  +  T+ +WEQFK+E RKHF+PHN ++ S+ KLRR R TGSI + +K
Sbjct: 259 AQLWWRRKYADQSGN--TIHSWEQFKTELRKHFVPHNAEIESRGKLRRLRHTGSILDYVK 318

Query: 241 VFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEMLIDFLA--KG 300
            FT LMLEI DL  KE LF FKDGLK+W +IELDR NV+TLDD I   E L+D+ A  KG
Sbjct: 319 EFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQTLDDAIAAVETLVDYSAQSKG 378

Query: 301 KKT-KEDEGETLESNEDRENEAKGNAKNGE-KNEKVIYTSKGKPFKFKKLKPCFLCNGP 323
           KK   E  G   +  ++   +  G  K  + KN K     +G+       KPCF+C GP
Sbjct: 379 KKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGE--CSNPPKPCFICKGP 430

BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.1e-59
Identity = 154/390 (39.49%), Postives = 211/390 (54.10%), Query Frame = 0

Query: 1   MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLG---- 60
           M++EEG+ S +EQVIEG  T   K +HS ++++KSK    R+HVDT L NLEQ +     
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  ---------------------------KKLGRTLNKKVRSLFSDVDNLCKFMEGELHELC 120
                                      + +GRT  K++R L S V  L  F+EGELH+L 
Sbjct: 61  AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLH 120

Query: 121 KE-------LENIRAEC--------------------------ARARKYDGTRNSMMVEN 180
            +       L+ +  EC                           +   Y+G RN+ +V+N
Sbjct: 121 TKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDN 180

Query: 181 FIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEH 240
           F+FGL++YF  + V  D A+I + P FLR   QLWWRRK+ ++  +   + +WEQFK+E 
Sbjct: 181 FLFGLERYFVALGVRDDEARINHAPTFLRDAAQLWWRRKYADQSGN--AIHSWEQFKAEL 240

Query: 241 RKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWV 300
           RKHF+PHN ++ S+ KLRR R TGSI + +K FT LMLEI DL  KE LF FKDGLK+W 
Sbjct: 241 RKHFVPHNAEIESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWA 300

Query: 301 RIELDRHNVKTLDDVITTAEMLIDFLA--KGKKT-KEDEGETLESNEDRENEAKGNAKNG 323
           +IELDR NV+TLDD I  AE L+D+ A  KGKK   E  G   +  ++   +  G  K  
Sbjct: 301 KIELDRRNVQTLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTF 360

BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 153/390 (39.23%), Postives = 209/390 (53.59%), Query Frame = 0

Query: 1   MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLG---- 60
           M++EEG+ S +EQVIEG  T   K +HS ++++KSK    R+HVDT L NLEQ +     
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  ---------------------------KKLGRTLNKKVRSLFSDVDNLCKFMEGELHELC 120
                                      + +GRT  ++++ L S V  L  F+EGELH L 
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNLH 120

Query: 121 KE-------LENIRAEC--------------------------ARARKYDGTRNSMMVEN 180
            +       L+ +  EC                           +   Y+G RN+ +V+N
Sbjct: 121 TKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDN 180

Query: 181 FIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEH 240
           F+FGL++YF  + V  D A+I + P FLR   QLWWRRK+ ++  +   + +WEQFK+E 
Sbjct: 181 FLFGLERYFVALGVRDDEARINHAPTFLRDAAQLWWRRKYADQSGN--AIHSWEQFKAEL 240

Query: 241 RKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWV 300
           RKHF+PHN ++ S+ KLRR R TGSI E +K FT LMLEI DL  KE LF FKDGLK+W 
Sbjct: 241 RKHFVPHNAEIESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWA 300

Query: 301 RIELDRHNVKTLDDVITTAEMLIDFLA--KGKKT-KEDEGETLESNEDRENEAKGNAKNG 323
           +IELDR NV+TLDD I  AE L+D+ A  KGKK   E  G   +  ++      G  K  
Sbjct: 301 KIELDRRNVQTLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTF 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T2W81.2e-6647.71Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SY307.7e-6647.06Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SJU93.1e-5942.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7THC04.1e-5939.49Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7VEX84.5e-5839.23Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..298
NoneNo IPR availablePANTHERPTHR34482:SF18RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATEDcoord: 73..297
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 73..297
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 143..234
e-value: 1.3E-7
score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001232Bhi09M001232mRNA