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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGGTACAAGCAACGATTGGCAGGTTGAGTGATGACTATGAGGGCTTAGTCTAAGAAACACTAAGATCAGTGTTGCTGCAAAAGAGATGATCAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTCAGGACAATTGAAAAGGTAGTCATTAGTATGCATCTATTAGCTCCCTATCCACTGCGCCTGTGCATGGCATTCATGGATTGAAGGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG mRNA sequence ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG Coding sequence (CDS) ATGGCATCCGAGGAGGGATATAACTCGCTAATTGAGCAAGTTATCGAAGGTTCAAAAACTTGTGCTCATAAAGCAAAACACTCTCTATCCAAGCAAGCGAAATCCAAGACCCACAATGCGAGACAACATGTCGACACTCACCTGGGCAACTTGGAGCAAAGCTTGGGAAAGAAGCTTGGACGAACACTCAATAAGAAGGTAAGATCCCTATTTTCTGATGTTGATAACCTATGTAAGTTTATGGAGGGTGAGCTTCATGAGCTTTGTAAGGAGCTCGAAAACATACGTGCTGAGTGTGCCAGAGCCCGCAAATATGATGGCACACGTAATTCTATGATGGTGGAAAACTTTATCTTCGGCTTAAAACAATACTTCAAAGTCATTTATGTCATCAAAGATGGTGCTAAAATTGCCAATACACCAAACTTCCTACGTGCAACAACCCAATTGTGGTGGCGTAGGAAACATGTTGAACGGGAAAGTGACCTATGCACATTGCGAACGTGGGAACAATTTAAATCAGAACACCGAAAGCATTTTATTCCCCACAATGTTGATATGAACTCAAAAAGAAAGCTTAGAAGGCCTAGACAAACTGGAAGCATTCCTGAATGCATAAAGGTATTCACGATCCTTATGCTCGAGATAGACGATCTATCCACCAAAGAAACACTCTTTCATTTTAAAGATGGTCTTAAGGAATGGGTGAGAATTGAGCTTGATAGGCACAATGTGAAGACGCTTGATGATGTTATTACTACTGCCGAGATGCTCATAGATTTCTTAGCCAAGGGGAAGAAAACCAAGGAAGATGAAGGGGAAACGTTAGAGTCCAATGAAGATCGAGAGAATGAGGCAAAGGGGAATGCCAAAAATGGAGAAAAGAACGAGAAGGTTATTTACACTAGTAAAGGTAAGCCCTTCAAGTTTAAGAAACTGAAGCCTTGTTTCCTTTGCAATGGGCCACAATAG Protein sequence MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAECARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEMLIDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKPCFLCNGPQ
Homology
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66 Identity = 146/306 (47.71%), Postives = 185/306 (60.46%), Query Frame = 0 Query: 45 DTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAE------ 104 + + N + + K LG + K++ + +V NL KF+E ELH L K ++ +RAE Sbjct: 12 NVEISNAAKEMIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHA 71
Query: 105 --------------------CARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIA 164 + Y+GTRN+ MVENF+FGL+QY+K + +I DGAKIA Sbjct: 72 SNGNASTSTSCTMVGTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKIA 131
Query: 165 NTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQ 224 N PNFLR + QLWWRRKH E E D L+TWEQFK+E RKHF+PHN DM ++ KLRR RQ Sbjct: 132 NAPNFLRESAQLWWRRKHAEWEKDRTILQTWEQFKAELRKHFVPHNADMEARGKLRRLRQ 191
Query: 225 TGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEML 284 GSIP+ IK FT LMLEI+DLS K+ LFHF+D LK+W +IELDR NV+TLDD I A L Sbjct: 192 IGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDDLKDWAKIELDRRNVRTLDDAIAAAGAL 251
Query: 285 IDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKP--C 323 ID +K KK + DEGE E ++ GN+K K K PF K P C Sbjct: 252 IDIYSKEKKRRVDEGEAFEPKKE------GNSKQDGKYGKA-------PFANKDTIPPTC 304
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7SY30 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00560 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 7.7e-66 Identity = 144/306 (47.06%), Postives = 182/306 (59.48%), Query Frame = 0 Query: 45 DTHLGNLEQSLGKKLGRTLNKKVRSLFSDVDNLCKFMEGELHELCKELENIRAEC----- 104 + + N + + K LG + K++ L +V NL KF+E ELH L K ++ +RAEC Sbjct: 12 NVEISNAAKEMIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHA 71
Query: 105 ---------------------ARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIA 164 + Y+GTRN+ MVENF+FGL+QY+K + ++ DGAKIA Sbjct: 72 SNGNASTSTSCTVVGTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKIA 131
Query: 165 NTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQ 224 N PNFL + QLWW RKH E E D L TW QFK+E RKHF+ HN +M ++ KLRR RQ Sbjct: 132 NAPNFLHESAQLWWHRKHAEWEKDRTILHTWRQFKAELRKHFVLHNANMEARGKLRRLRQ 191
Query: 225 TGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEML 284 GSIP+ IK FT LMLEI+DLS K+ LFHF+DGLK+W +IELDR NV+TLDD I A+ L Sbjct: 192 IGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDGLKDWAKIELDRRNVRTLDDAIAAAKAL 251
Query: 285 IDFLAKGKKTKEDEGETLESNEDRENEAKGNAKNGEKNEKVIYTSKGKPFKFKKLKP--C 323 ID K KKT+ DEGE E E N+K EK K PF + P C Sbjct: 252 IDIYFKEKKTRVDEGEAFEPKE-------WNSKQDEKYGKT-------PFANRDTTPPTC 303
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7SJU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002790 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59 Identity = 151/359 (42.06%), Postives = 207/359 (57.66%), Query Frame = 0 Query: 1 MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLGKKLG 60 M++EEG+ S +EQVIEGS T K +HS ++++KSK R+HVDT L NLEQ + Sbjct: 79 MSAEEGHTSPVEQVIEGSVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDV-- 138
Query: 61 RTLNKKVRSLFSDVDNLCKFMEGELHELCKE-------LENIRAEC-------------- 120 L ++++ L S V L F+EGELH L + L+ + EC Sbjct: 139 -QLAEELKELASTVTTLKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPSTST 198
Query: 121 ------------ARARKYDGTRNSMMVENFIFGLKQYFKVIYVIKDGAKIANTPNFLRAT 180 + Y+G RN+ +V+NF+FGL++YF + V D A+I + P FLR Sbjct: 199 HPTTSGTSNIKVPKPDVYNGVRNATIVDNFLFGLERYFVALGVRDDEARINHAPTFLRDA 258
Query: 181 TQLWWRRKHVERESDLCTLRTWEQFKSEHRKHFIPHNVDMNSKRKLRRPRQTGSIPECIK 240 QLWWRRK+ ++ + T+ +WEQFK+E RKHF+PHN ++ S+ KLRR R TGSI + +K Sbjct: 259 AQLWWRRKYADQSGN--TIHSWEQFKTELRKHFVPHNAEIESRGKLRRLRHTGSILDYVK 318
Query: 241 VFTILMLEIDDLSTKETLFHFKDGLKEWVRIELDRHNVKTLDDVITTAEMLIDFLA--KG 300 FT LMLEI DL KE LF FKDGLK+W +IELDR NV+TLDD I E L+D+ A KG Sbjct: 319 EFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQTLDDAIAAVETLVDYSAQSKG 378
Query: 301 KKT-KEDEGETLESNEDRENEAKGNAKNGE-KNEKVIYTSKGKPFKFKKLKPCFLCNGP 323 KK E G + ++ + G K + KN K +G+ KPCF+C GP Sbjct: 379 KKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGE--CSNPPKPCFICKGP 430
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 4.1e-59 Identity = 154/390 (39.49%), Postives = 211/390 (54.10%), Query Frame = 0 Query: 1 MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLG---- 60 M++EEG+ S +EQVIEG T K +HS ++++KSK R+HVDT L NLEQ + Sbjct: 1 MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60
Query: 61 ---------------------------KKLGRTLNKKVRSLFSDVDNLCKFMEGELHELC 120 + +GRT K++R L S V L F+EGELH+L Sbjct: 61 AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLH 120
Query: 121 KE-------LENIRAEC--------------------------ARARKYDGTRNSMMVEN 180 + L+ + EC + Y+G RN+ +V+N Sbjct: 121 TKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDN 180
Query: 181 FIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEH 240 F+FGL++YF + V D A+I + P FLR QLWWRRK+ ++ + + +WEQFK+E Sbjct: 181 FLFGLERYFVALGVRDDEARINHAPTFLRDAAQLWWRRKYADQSGN--AIHSWEQFKAEL 240
Query: 241 RKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWV 300 RKHF+PHN ++ S+ KLRR R TGSI + +K FT LMLEI DL KE LF FKDGLK+W Sbjct: 241 RKHFVPHNAEIESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWA 300
Query: 301 RIELDRHNVKTLDDVITTAEMLIDFLA--KGKKT-KEDEGETLESNEDRENEAKGNAKNG 323 +IELDR NV+TLDD I AE L+D+ A KGKK E G + ++ + G K Sbjct: 301 KIELDRRNVQTLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTF 360
BLAST of Bhi09G001232 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58 Identity = 153/390 (39.23%), Postives = 209/390 (53.59%), Query Frame = 0 Query: 1 MASEEGYNSLIEQVIEGSKTCAHKAKHSLSKQAKSKTHNARQHVDTHLGNLEQSLG---- 60 M++EEG+ S +EQVIEG T K +HS ++++KSK R+HVDT L NLEQ + Sbjct: 1 MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60
Query: 61 ---------------------------KKLGRTLNKKVRSLFSDVDNLCKFMEGELHELC 120 + +GRT ++++ L S V L F+EGELH L Sbjct: 61 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNLH 120
Query: 121 KE-------LENIRAEC--------------------------ARARKYDGTRNSMMVEN 180 + L+ + EC + Y+G RN+ +V+N Sbjct: 121 TKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDN 180
Query: 181 FIFGLKQYFKVIYVIKDGAKIANTPNFLRATTQLWWRRKHVERESDLCTLRTWEQFKSEH 240 F+FGL++YF + V D A+I + P FLR QLWWRRK+ ++ + + +WEQFK+E Sbjct: 181 FLFGLERYFVALGVRDDEARINHAPTFLRDAAQLWWRRKYADQSGN--AIHSWEQFKAEL 240
Query: 241 RKHFIPHNVDMNSKRKLRRPRQTGSIPECIKVFTILMLEIDDLSTKETLFHFKDGLKEWV 300 RKHF+PHN ++ S+ KLRR R TGSI E +K FT LMLEI DL KE LF FKDGLK+W Sbjct: 241 RKHFVPHNAEIESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWA 300
Query: 301 RIELDRHNVKTLDDVITTAEMLIDFLA--KGKKT-KEDEGETLESNEDRENEAKGNAKNG 323 +IELDR NV+TLDD I AE L+D+ A KGKK E G + ++ G K Sbjct: 301 KIELDRRNVQTLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTF 360
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T2W8 | 1.2e-66 | 47.71 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7SY30 | 7.7e-66 | 47.06 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7SJU9 | 3.1e-59 | 42.06 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7THC0 | 4.1e-59 | 39.49 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A5A7VEX8 | 4.5e-58 | 39.23 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=... | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 78..105 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 270..298 |
None | No IPR available | PANTHER | PTHR34482:SF18 | RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED | coord: 73..297 |
None | No IPR available | PANTHER | PTHR34482 | DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE | coord: 73..297 |
IPR005162 | Retrotransposon gag domain | PFAM | PF03732 | Retrotrans_gag | coord: 143..234 e-value: 1.3E-7 score: 31.8 |
Relationships
The following mRNA feature(s) are a part of this gene:
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