Bhi09G001134 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001134
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLate embryogenesis abundant protein (LEA) family protein
Locationchr9: 34413647 .. 34415279 (+)
RNA-Seq ExpressionBhi09G001134
SyntenyBhi09G001134
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGTTCAAAGGTTGCTGCTGCTGCAGCTGATGGAGCTGCTCAAGTTGTGAAGAGAGCCACTGAGAAGGCTGCTGAAGATGTCAAAGATAAGGCTGTGTCTGCCGCCGACGAGGTTAATTATTTTCAATAACACACACTAACTTTTATAATATTTATCACGTTTTATTCCAAATTTTACAAAACTAAAGGAAACTTATTTATAAATATAACAAAATATAAGATTTCGATAAATATTTATCACAATCTACCGATATCTATCACTATAAGTGATAGATTCTATTGTAGTCTATCGCGTTCTATCACTGATACACAGTGACATTTTGCTATATTTAAATAGATTTTCTAATGCTTTTACATATATGTTCAGTGTCTTTATTGGTCAATTACTTTTTTTTGTTACGAAATAAAAGAAATAATTTATTTTTTATCCTTTCGAATTTGTAATCAATTATAGTCCGTGAATTTTAGCATGTAAAAGGTTAATCATTCTATTAGGCAACTTTTTACCATTTAAAATAAACCCTAAAGATTTGTATCAAAATTGATTATCGAATTTAATTATAATAATGACTAAGGATTTTATAGTTTAGAAACAAGTTTGGTTTCTAACCAGTGTATCAGGTAAGAAATTTTATTAAATCTTAGTAATAATTTCCACGACAGGACCAACTGAAGCAAAATTTTGAATACATAGACTAAGGTCTTATTTAGTAACCATTTTATTTTTTATTTTTTATTTTTTATAATTAAATCTTAAATACCATTTCCATTTATTGGTTTCTACTTTTTCTTGTCTAAATCGTAGGAGTGTTTTCAATATCAAAGCCAAATTTGGCAAACAAGAAAAAAATAGTTTTCGAGACTTGGTTTTGTTTTCTAAAATGTTTAAATAAAAAATATGAAAACAATGAGTAAGAAATTGTGAGAAAACAAAAATAATTTTAAAAAACAAAAACCTAAGACTCCGTTTGATAACCATTTGGGTTTTTGTTTTTATTTTAAAAATTAAGCCTATTTCATTTACATTTCTTACAATGATTTACATCTTTCTTAAGTCCAATGGTCGAATTCTTAGCCAAATTCCAAAAACAAAAACAACTTTTTGAAAGATACTTTTTTTTAGTTCTCAATTTTTTACTTGGTTTTTTATACCATTAGTGAAGGTAGATAACAAAGAAGAATCTTGGAGATAGAAGTGAGTCCATAGGCTTAATTTTCAAAAACAAAATGGTTACTAAATGGGGCCTAAATAATTATCAATCAAGATTGAAATTATTATCTGGACATTTTTTTCGAAATGAAAATGATAGAGTTGAATTTAGAGAAGTTACTATATAGAAATTATTTTTAACATAGACATATATATTTAACTTTGATGATGGTTAAATGTTTGAGAGTGGAAAATGAAATTATAGGTGACTCAAAAAACAAAAGAAGTGGCAGGGAAGGTATCTGAAACAGCACAAGATTTGGCTGGGAAGGCAAAGCAAACAGTTCAAGATGCATGGGGATCAGTGAAGGATACAACACAAAACATCAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGACAATCTCAAAAAGAATATCAAGACAAACTGTTGA

mRNA sequence

GAAAGTTCAAAGGTTGCTGCTGCTGCAGCTGATGGAGCTGCTCAAGTTGTGAAGAGAGCCACTGAGAAGGCTGCTGAAGATGTCAAAGATAAGGCTGTGTCTGCCGCCGACGAGGTGACTCAAAAAACAAAAGAAGTGGCAGGGAAGGTATCTGAAACAGCACAAGATTTGGCTGGGAAGGCAAAGCAAACAGTTCAAGATGCATGGGGATCAGTGAAGGATACAACACAAAACATCAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGACAATCTCAAAAAGAATATCAAGACAAACTGTTGA

Coding sequence (CDS)

GAAAGTTCAAAGGTTGCTGCTGCTGCAGCTGATGGAGCTGCTCAAGTTGTGAAGAGAGCCACTGAGAAGGCTGCTGAAGATGTCAAAGATAAGGCTGTGTCTGCCGCCGACGAGGTGACTCAAAAAACAAAAGAAGTGGCAGGGAAGGTATCTGAAACAGCACAAGATTTGGCTGGGAAGGCAAAGCAAACAGTTCAAGATGCATGGGGATCAGTGAAGGATACAACACAAAACATCAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGACAATCTCAAAAAGAATATCAAGACAAACTGTTGA

Protein sequence

ESSKVAAAAADGAAQVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKAKQTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKTNC
Homology
BLAST of Bhi09G001134 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-11
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 15  QVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKAKQTVQDAWGSVKD 74
           ++V   T    + V DKA  A  +V +K  E A  +S+ A +L  KAK T ++AW  VKD
Sbjct: 24  RLVHGTTSTRKDSVCDKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKD 83

Query: 75  TTQNIKEKVVGKAEESKEAIKDTADNLKKNIKT 108
           TT+ IK+ V GK EE+KE+IK TA  +++++ T
Sbjct: 84  TTEKIKDTVTGKTEETKESIKATAKTVERSMNT 116

BLAST of Bhi09G001134 vs. ExPASy Swiss-Prot
Match: Q8LFD5 (Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-10
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 15  QVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKAKQTVQDAWGSVKD 74
           ++V   T    + V DKA  A  +V +K  E A  +S+ A +L  KAK T ++AW  VKD
Sbjct: 24  RLVHGTTSTRKDSVCDKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKD 83

Query: 75  TTQNIKEKVVGKAEESKEAIKDTADNLKKNIKT 108
           TT+ IK+ V GK EE+KE+IK TA  +++++ T
Sbjct: 84  TTEKIKDTVTGKTEETKESIKATAKTVERSMNT 116

BLAST of Bhi09G001134 vs. ExPASy TrEMBL
Match: A0A0A0K9U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336500 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 2   SSKVAAAAADGAAQVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKA 61
           SS+V AAAAD AA VVKR TE+AAE+VKDKAVSAADEVTQ+TKEVAGKVSETAQD+AGKA
Sbjct: 40  SSQVTAAAADEAAHVVKRTTERAAEEVKDKAVSAADEVTQRTKEVAGKVSETAQDMAGKA 99

Query: 62  KQTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKTNC 110
           KQTV+DAWGSVKDTTQNIK+KVVGKAEESKEAIKDTA+N+KKNIK+NC
Sbjct: 100 KQTVEDAWGSVKDTTQNIKQKVVGKAEESKEAIKDTAENIKKNIKSNC 147

BLAST of Bhi09G001134 vs. ExPASy TrEMBL
Match: A0A6J1DGG7 (uncharacterized protein At4g13230 OS=Momordica charantia OX=3673 GN=LOC111020221 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 2   SSKVAAAAADGAAQVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKA 61
           S   AAAAADGAAQ VKRATEKAAE+VKDKA SAA+EVTQKTKEVAGKVSETAQDLAGKA
Sbjct: 42  SQFAAAAAADGAAQGVKRATEKAAEEVKDKASSAAEEVTQKTKEVAGKVSETAQDLAGKA 101

Query: 62  KQTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKTNC 110
           KQTVQ+AWGSVKDTTQNIKEKVVGKAEESKEAIKDTADN+K  IK+NC
Sbjct: 102 KQTVQEAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNIKDKIKSNC 149

BLAST of Bhi09G001134 vs. ExPASy TrEMBL
Match: A0A1S3C7D4 (uncharacterized protein At4g13230 OS=Cucumis melo OX=3656 GN=LOC103497533 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 0

Query: 3   SKVAAAAADGAAQVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKAK 62
           S   +AAADGAAQ VKR TEKAAE+VKDKAVSAA+EVTQKTK+VAGKVSETAQD+AGKAK
Sbjct: 40  SSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAK 99

Query: 63  QTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKTNC 110
           QTV+DAWGSVKDTTQNIKEKVVGKAEESKEAIKDTA+N+K NIK+NC
Sbjct: 100 QTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 146

BLAST of Bhi09G001134 vs. ExPASy TrEMBL
Match: A0A1Q3BS03 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14160 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.4e-21
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 2   SSKVAAAAADGAAQVVKRA---TEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLA 61
           S + A++A D A Q  K+     +K  EDVKDKA S A++VT+K ++ A KV ETAQDL 
Sbjct: 28  SRQEASSACDKATQAAKQGANEAKKTCEDVKDKAASNAEQVTKKAEDAADKVKETAQDLT 87

Query: 62  GKAKQTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIK 107
            KAKQTVQDAWGSVKDTT  IK+ VVGKAEESKE+IK+TA+N+K+N+K
Sbjct: 88  QKAKQTVQDAWGSVKDTTTKIKDTVVGKAEESKESIKETAENVKRNVK 135

BLAST of Bhi09G001134 vs. ExPASy TrEMBL
Match: A0A5B7AK94 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_024954 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 3   SKVAAAAADGAAQVVKRATE--KAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGK 62
           +K A AA  GA    + A E  K  +D+K+KA S A++VT K+K+VAGKVSETAQDLA K
Sbjct: 68  NKAADAANQGADAAKQGAHEAKKVGQDMKNKAASTAEDVTHKSKDVAGKVSETAQDLAEK 127

Query: 63  AKQTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKT 108
           AKQT QDAWGSVKDTTQ IKE V GKAEESK++IKD+A+N+K+++ T
Sbjct: 128 AKQTAQDAWGSVKDTTQKIKETVAGKAEESKDSIKDSAENVKRSMNT 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G13230.16.9e-1141.94Late embryogenesis abundant protein (LEA) family protein [more]
Match NameE-valueIdentityDescription
Q8LFD59.7e-1041.94Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 P... [more]
Match NameE-valueIdentityDescription
A0A0A0K9U42.3e-3887.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336500 PE=4 SV=1[more]
A0A6J1DGG71.1e-3788.89uncharacterized protein At4g13230 OS=Momordica charantia OX=3673 GN=LOC111020221... [more]
A0A1S3C7D41.5e-3785.98uncharacterized protein At4g13230 OS=Cucumis melo OX=3656 GN=LOC103497533 PE=4 S... [more]
A0A1Q3BS034.4e-2161.11Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
A0A5B7AK945.7e-2162.62Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_024954... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availableGENE3D1.20.120.20Apolipoproteincoord: 1..109
e-value: 8.9E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 4..107
NoneNo IPR availablePANTHERPTHR47372:SF21LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 3-LIKEcoord: 4..107
NoneNo IPR availableSUPERFAMILY58113Apolipoprotein A-Icoord: 15..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001134Bhi09M001134mRNA