Bhi09G001066 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001066
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Poly(A)-specific ribonuclease
Location	chr9: 31917113 .. 31917499 (+)
RNA-Seq Expression	Bhi09G001066
Synteny	Bhi09G001066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCAAATCCATGATGGAGTCTGTAGTGGAGTTTGCCATCATAGCTCAACGTTTCCTTGGTACAGTCAGTGATCTAAAGTACATGATTCGCAATTGCGAATACTTACTGAATGGTGAACTTGGACTCAAAAAACTTACTAAGTTACTCAATATTGTGAATGACATTCCTACCCATCAACTTGCTGGTTTTGATAGTTTATTGATAGCTTTTGCGTATGCGAAGATGAAGAAGATGTATGAGTTTTCGTCGGAAAATCTCGATGGGTTCTTGTATGGTTTATATTATAGAATTCGGGGACATAAGATCCATTGGTTCAATCCATATTACCTACATTGGGCATGCTTTGCTCATAGTTTGTTTTGTGGTTATGTCATTGTTTAG

mRNA sequence

ATGGTGATCAAATCCATGATGGAGTCTGTAGTGGAGTTTGCCATCATAGCTCAACGTTTCCTTGGTACAGTCAGTGATCTAAAGTACATGATTCGCAATTGCGAATACTTACTGAATGGTGAACTTGGACTCAAAAAACTTACTAAGTTACTCAATATTGTGAATGACATTCCTACCCATCAACTTGCTGGTTTTGATAGTTTATTGATAGCTTTTGCGTATGCGAAGATGAAGAAGATGTATGAGTTTTCGTCGGAAAATCTCGATGGGTTCTTGTATGGTTTATATTATAGAATTCGGGGACATAAGATCCATTGGTTCAATCCATATTACCTACATTGGGCATGCTTTGCTCATAGTTTGTTTTGTGGTTATGTCATTGTTTAG

Coding sequence (CDS)

ATGGTGATCAAATCCATGATGGAGTCTGTAGTGGAGTTTGCCATCATAGCTCAACGTTTCCTTGGTACAGTCAGTGATCTAAAGTACATGATTCGCAATTGCGAATACTTACTGAATGGTGAACTTGGACTCAAAAAACTTACTAAGTTACTCAATATTGTGAATGACATTCCTACCCATCAACTTGCTGGTTTTGATAGTTTATTGATAGCTTTTGCGTATGCGAAGATGAAGAAGATGTATGAGTTTTCGTCGGAAAATCTCGATGGGTTCTTGTATGGTTTATATTATAGAATTCGGGGACATAAGATCCATTGGTTCAATCCATATTACCTACATTGGGCATGCTTTGCTCATAGTTTGTTTTGTGGTTATGTCATTGTTTAG

Protein sequence

MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHKIHWFNPYYLHWACFAHSLFCGYVIV

Homology

[Close]

BLAST of Bhi09G001066 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-06
Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 12  EFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAGFDSLLIA 71
           EFA    +  G V D K M   CE  L   LGL KL +LL I      H  AG DSL+ A
Sbjct: 174 EFATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHH-AGSDSLMTA 233

Query: 72  FAYAKMKKMYEFSSENLDGFLYGL 96
             + K+K +YE  S    G +YG+
Sbjct: 234 LVFIKLKHVYE-DSRFARGLIYGI 254

[Close]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.4e-05
Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 12  EFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAGFDSLLIA 71
           EFA    +  G V D K M   CE  L   LGL KL +LL I      H  AG DSL+ A
Sbjct: 174 EFATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHH-AGSDSLMTA 233

Query: 72  FAYAKMKKMYEFSSENLDGFLYGL 96
             + K+K +YE  S    G +YG+
Sbjct: 234 LVFIKLKHVYE-DSRFARGLIYGI 254

[Close]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot
Match: Q3ZC01 (CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 5   SMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAG 64
           ++ E  ++F  I + F   + D+KY++++C+ L     GL+++ + L +    P HQ AG
Sbjct: 173 NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQ-AG 232

Query: 65  FDSLLIAFAYAKMKKMYEFSSENLD-----GFLYGL 96
            DSLL   A+ KM++M  F  +++D     G LYGL
Sbjct: 233 SDSLLTGMAFFKMREM--FFEDHIDDAKYCGHLYGL 262

[Close]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot
Match: Q5ZJV9 (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus OX=9031 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 5   SMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAG 64
           ++ E  ++F  I + F   + D+KY++++C+ L     GL+++ + L +    P HQ AG
Sbjct: 173 NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQ-AG 232

Query: 65  FDSLLIAFAYAKMKKMYEFSSENLD-----GFLYGL 96
            DSLL   A+ KM++M  F  +++D     G LYGL
Sbjct: 233 SDSLLTGMAFFKMREM--FFEDHIDDAKYCGHLYGL 262

[Close]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot
Match: Q9UIV1 (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens OX=9606 GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 5   SMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAG 64
           ++ E  ++F  I + F   + D+KY++++C+ L     GL+++ + L +    P HQ AG
Sbjct: 173 NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQ-AG 232

Query: 65  FDSLLIAFAYAKMKKMYEFSSENLD-----GFLYGL 96
            DSLL   A+ KM++M  F  +++D     G LYGL
Sbjct: 233 SDSLLTGMAFFKMREM--FFEDHIDDAKYCGHLYGL 262

[Close]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot
Match: Q60809 (CCR4-NOT transcription complex subunit 7 OS=Mus musculus OX=10090 GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 5   SMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTHQLAG 64
           ++ E  ++F  I + F   + D+KY++++C+ L     GL+++ + L +    P HQ AG
Sbjct: 173 NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKG---GLQEVAEQLELERIGPQHQ-AG 232

Query: 65  FDSLLIAFAYAKMKKMYEFSSENLD-----GFLYGL 96
            DSLL   A+ KM++M  F  +++D     G LYGL
Sbjct: 233 SDSLLTGMAFFKMREM--FFEDHIDDAKYCGHLYGL 262

[Close]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTH 60
           M+I++M ES+VEFAIIAQR LGTV+DLK+MIRNCEYL+NGELGLK+L +LLN VND  T 
Sbjct: 157 MMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLKRLAELLN-VND--TI 216

Query: 61  QLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHK 104
              G DSLLIA AYAKMKK  +FSSE  DGFLYG YYRIRG++
Sbjct: 217 FNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYR 256

[Close]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 74/103 (71.84%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTH 60
           M+I++M ES+VEFAIIAQR LGTV+DLK+MIRNCEYL+NGELGLK+L +LLN VND  T 
Sbjct: 157 MMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLKRLAELLN-VND--TI 216

Query: 61  QLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHK 104
              G DSLLIA AYAKMKK  +FSSE  DGFLYG YYRIRG++
Sbjct: 217 FNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFYYRIRGYR 256

[Close]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.3e-28
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTH 60
           M+I++M ES+VEFAIIAQR LGTV+DLK+MIRNCEYL+NGELGLK+L +LLN VND  T 
Sbjct: 157 MMIRTMPESMVEFAIIAQRHLGTVNDLKHMIRNCEYLMNGELGLKRLAELLN-VND--TI 216

Query: 61  QLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHK 104
              G DSLLIA AYAKMKK  +FSSE  DGFLYG +YRIRG++
Sbjct: 217 FNGGSDSLLIALAYAKMKKTLKFSSEITDGFLYGFHYRIRGYR 256

[Close]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL
Match: A0A0A0KTU4 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTH 60
           M+IK+M ES+VEFAIIAQRFLGTV+DLKYMI +CE L+ GELGLK+L +LL+ VND  T 
Sbjct: 158 MIIKAMPESMVEFAIIAQRFLGTVNDLKYMIGHCERLMKGELGLKRLAELLD-VND--TV 217

Query: 61  QLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHK 104
              G DSLLIA AY KMKK+ + SSEN  GFLYG  YRIRG+K
Sbjct: 218 FSGGSDSLLIALAYVKMKKL-KLSSENTGGFLYGFQYRIRGYK 256

[Close]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL
Match: A0A5A7TSL5 (Putative CCR4-associated factor 1-like protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002890 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MVIKSMMESVVEFAIIAQRFLGTVSDLKYMIRNCEYLLNGELGLKKLTKLLNIVNDIPTH 60
           M+I++M +S+VEFAIIAQ  LGTV+DLK++IRNCE+L+NGELGLK+L +LLN VND  T 
Sbjct: 124 MMIRTMPDSMVEFAIIAQCHLGTVNDLKHIIRNCEHLMNGELGLKRLVELLN-VND--TI 183

Query: 61  QLAGFDSLLIAFAYAKMKKMYEFSSENLDGFLYGLYYRIRGHK 104
              G DSLLIA AYAKMKK  +FS +  DGFLYG +YRI+G++
Sbjct: 184 FNGGSDSLLIALAYAKMKKTLKFSPKITDGFLYGFHYRIQGYR 223

The following BLAST results are available for this feature:

BLAST of Bhi09G001066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	6.0e-06	40.48	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Bhi09G001066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	8.4e-05	40.48	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q3ZC01	1.4e-04	33.33	CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=...	[more]
Q5ZJV9	1.4e-04	33.33	CCR4-NOT transcription complex subunit 7 OS=Gallus gallus OX=9031 GN=CNOT7 PE=2 ...	[more]
Q9UIV1	1.4e-04	33.33	CCR4-NOT transcription complex subunit 7 OS=Homo sapiens OX=9606 GN=CNOT7 PE=1 S...	[more]
Q60809	1.4e-04	33.33	CCR4-NOT transcription complex subunit 7 OS=Mus musculus OX=10090 GN=Cnot7 PE=1 ...	[more]

BLAST of Bhi09G001066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D333	1.1e-28	71.84	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	1.1e-28	71.84	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]
A0A5A7TN62	4.3e-28	70.87	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KTU4	1.0e-24	67.96	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV...	[more]
A0A5A7TSL5	2.9e-24	64.08	Putative CCR4-associated factor 1-like protein 8 OS=Cucumis melo var. makuwa OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..95 e-value: 1.0E-11 score: 46.5
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 2..103
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 2..103
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001066	Bhi09M001066	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity