Bhi09G001042 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001042
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionMitochondrial import inner membrane translocase subunit Tim21
Locationchr9: 31119952 .. 31121253 (-)
RNA-Seq ExpressionBhi09G001042
SyntenyBhi09G001042
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGTAAAATAGAATACTATTATTAGTTCTCTTCCGCAAATTTATAAACAAAATATAAATCGAAAATTCACAACCAAATTAAATCACAGGGTTCGAATAAACTATTAAAATAAAGATATTATTATTTCTCCATTTTTATATCTTTTATAAGAAAAACAAATAAAGGGGAAAAAATACCCAAAAATCAGAAAAAAGTCACAAGAGTTTGCTTCTATTTTTTCTTCCTAAACTAAAATTAAAATCAGAAACTAAAAATTCCCCAAACAACAAACACAAACCAACCCACAACTAACCCCAAACTCCGCCGTCTAATTCCGGCAACCCCACCCTTATCAGGACCCGGCGCTTTGGGAGAAGCGGCAGTTTCATTAACGCCGACTACCGGAGGCGTAGGTGCACCAGACGCGCCACCGTGAGCGCTTGGAGCAGGGCTAGGAGCAACACCACCACCACTCTTATCAAAAACCAACACGCCTTTTGCATTCAAATTAGCCGGTTTAAAATCATGCGGCGCAGGAACACCAGAATCCGGGTCGACCGCCGGTCCAACTTGCCAGACTTGGTTCAACGACTTAGCCTTAGCCGGAACTTTGACGGTGGCGAAGATAATCAAGCGGCCGTTGGCAGATTCGGCCGCCATGTTCCAGAACGGAAAGGAAAGCGAGGGGGAAGGAAGAATAGAGGAGTAGGAAGAAATGTTGAAGGTACGAACAGAGGGGGTGGTGCCGGAGAGAGTGGCGAGGAAGGCTTGAGATCCGACCATGCCAGTGGCGGTGGGGTTGATGGCCCAGGCAACCCAGCCGCCGGAGCGCGGCGGAGAGGCGAGGAAGGCAATGGAGAGAGAGGAATTTTTGGGATCGTGAGTCCAGTGGAGGAAGGCGTTGAGATGGGGGAGATCTTGGCAGTGGGTGAAGGATCTGTTGGGGAAGGATTGAGAATTGCAAGTGAGGGAATGGGAGAGGGAAAGAGAGGAGGAAATTAGGGTTAAGAAGAGGAAGAAATGGGAGAAGGAAGCCATTGGAGAGGGGAAATTGAAGAGAAAGGGAGGATTGAATGGAGAATATATAATGATAGAAAATTGGGGAAGTGGGGGAGTGGGATGATCATGTGGGGGAAGTGCCAGTGGGAACTTACTGCCCAATTAACCCTTTTTTTTTTTCCCTTCTTCCTTTGATTTGGGGTTACAATGTTTGACTTTGACCTTCTCTTTGAGATGAGTGGTGAAGTGGGAAATGAGAGAGTGGGAAACTTTTGGAGAAAAAAAAAAACTCAATTTTTCCTCCATTCTTTTTTATTCAAAT

mRNA sequence

AACTGTAAAATAGAATACTATTATTAGTTCTCTTCCGCAAATTTATAAACAAAATATAAATCGAAAATTCACAACCAAATTAAATCACAGGGTTCGAATAAACTATTAAAATAAAGATATTATTATTTCTCCATTTTTATATCTTTTATAAGAAAAACAAATAAAGGGGAAAAAATACCCAAAAATCAGAAAAAAGTCACAAGAGTTTGCTTCTATTTTTTCTTCCTAAACTAAAATTAAAATCAGAAACTAAAAATTCCCCAAACAACAAACACAAACCAACCCACAACTAACCCCAAACTCCGCCGTCTAATTCCGGCAACCCCACCCTTATCAGGACCCGGCGCTTTGGGAGAAGCGGCAGTTTCATTAACGCCGACTACCGGAGGCGTAGGTGCACCAGACGCGCCACCGTGAGCGCTTGGAGCAGGGCTAGGAGCAACACCACCACCACTCTTATCAAAAACCAACACGCCTTTTGCATTCAAATTAGCCGGTTTAAAATCATGCGGCGCAGGAACACCAGAATCCGGGTCGACCGCCGGTCCAACTTGCCAGACTTGGTTCAACGACTTAGCCTTAGCCGGAACTTTGACGGTGGCGAAGATAATCAAGCGGCCGTTGGCAGATTCGGCCGCCATGTTCCAGAACGGAAAGGAAAGCGAGGGGGAAGGAAGAATAGAGGAGTAGGAAGAAATGTTGAAGGTACGAACAGAGGGGGTGGTGCCGGAGAGAGTGGCGAGGAAGGCTTGAGATCCGACCATGCCAGTGGCGGTGGGGTTGATGGCCCAGGCAACCCAGCCGCCGGAGCGCGGCGGAGAGGCGAGGAAGGCAATGGAGAGAGAGGAATTTTTGGGATCGTGAGTCCAGTGGAGGAAGGCGTTGAGATGGGGGAGATCTTGGCAGTGGGTGAAGGATCTGTTGGGGAAGGATTGAGAATTGCAAGTGAGGGAATGGGAGAGGGAAAGAGAGGAGGAAATTAGGGTTAAGAAGAGGAAGAAATGGGAGAAGGAAGCCATTGGAGAGGGGAAATTGAAGAGAAAGGGAGGATTGAATGGAGAATATATAATGATAGAAAATTGGGGAAGTGGGGGAGTGGGATGATCATGTGGGGGAAGTGCCAGTGGGAACTTACTGCCCAATTAACCCTTTTTTTTTTTCCCTTCTTCCTTTGATTTGGGGTTACAATGTTTGACTTTGACCTTCTCTTTGAGATGAGTGGTGAAGTGGGAAATGAGAGAGTGGGAAACTTTTGGAGAAAAAAAAAAACTCAATTTTTCCTCCATTCTTTTTTATTCAAAT

Coding sequence (CDS)

ATGCGGCGCAGGAACACCAGAATCCGGGTCGACCGCCGGTCCAACTTGCCAGACTTGGTTCAACGACTTAGCCTTAGCCGGAACTTTGACGGTGGCGAAGATAATCAAGCGGCCGTTGGCAGATTCGGCCGCCATGTTCCAGAACGGAAAGGAAAGCGAGGGGGAAGGAAGAATAGAGGAGTAGGAAGAAATGTTGAAGGTACGAACAGAGGGGGTGGTGCCGGAGAGAGTGGCGAGGAAGGCTTGAGATCCGACCATGCCAGTGGCGGTGGGGTTGATGGCCCAGGCAACCCAGCCGCCGGAGCGCGGCGGAGAGGCGAGGAAGGCAATGGAGAGAGAGGAATTTTTGGGATCGTGAGTCCAGTGGAGGAAGGCGTTGAGATGGGGGAGATCTTGGCAGTGGGTGAAGGATCTGTTGGGGAAGGATTGAGAATTGCAAGTGAGGGAATGGGAGAGGGAAAGAGAGGAGGAAATTAG

Protein sequence

MRRRNTRIRVDRRSNLPDLVQRLSLSRNFDGGEDNQAAVGRFGRHVPERKGKRGGRKNRGVGRNVEGTNRGGGAGESGEEGLRSDHASGGGVDGPGNPAAGARRRGEEGNGERGIFGIVSPVEEGVEMGEILAVGEGSVGEGLRIASEGMGEGKRGGN
Homology
[Close]
BLAST of Bhi09G001042 vs. ExPASy TrEMBL
Match: A0A0A0K6W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368160 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 100/154 (64.94%), Postives = 112/154 (72.73%), Query Frame = 0 

Query: 5   NTRIRVDRRSNLPDLVQRLSLSRNFDGGEDNQAAVGRFGRHVPERKGKRGGRKNRGVGRN 64
           NT   + RR NLP+LVQR  L R+F G ED +  VGR G  VPE KG+RGGR N  +  N
Sbjct: 5   NTHTGIHRRPNLPNLVQRRRLLRHFHGNEDRKQIVGRLGCKVPEGKGERGGRTNGVIRSN 64

Query: 65  VEGTNRGGGAGESGEEGLRSDHASGGGVDGPGNPAAGARRRGEEGNGERGIFGIVSPVEE 124
           VE T+  G   ESGEEGL S HA GGGVDGPG+P  G   RGEEG+GERGIFGIV PVEE
Sbjct: 65  VESTDSEGFGEESGEEGLGSSHAGGGGVDGPGDPTGGCGGRGEEGDGERGIFGIVRPVEE 124

Query: 125 GVEMGEILAVGEGSVGEGLRIASEGMGEGKRGGN 159
           GVE+GEILA+GEGSV EGL  ASEGMG+GK  GN
Sbjct: 125 GVEIGEILAIGEGSVWEGLGRASEGMGDGKGRGN 158

[Close]
BLAST of Bhi09G001042 vs. ExPASy TrEMBL
Match: A0A6A4M044 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_04389 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 64/154 (41.56%), Postives = 78/154 (50.65%), Query Frame = 0 

Query: 11  DRRSNLPDLVQRLSLSRNFDGGEDNQAAVGRFGRHVPERKGKRG-----GRKNRGVGRNV 70
           DR +NLP+LV RL + R    GED   AV  F      R G R      G  NR VG +V
Sbjct: 8   DRPANLPNLVHRLRVRRQSQRGEDPHHAVRMF------RAGVRDVVRDLGFDNRAVGADV 67

Query: 71  EGTNRGGGAGE--SGEEGLRSDHASGGGVDGPGNPAAGARRRGEEGNGERGIFGIVSPVE 130
            G +  G       GEEGL + HA  G VDGPGNP  G   R + G+GE G  G V PVE
Sbjct: 68  VGVDDHGTVVRLLEGEEGLGARHARAGWVDGPGNPTVGFGGRCDVGDGEGGGGGSVGPVE 127

Query: 131 EGVEMGEILAVGEGSVGEGLRIASEGMGEGKRGG 158
           EGVE+ ++ AVG       L +  EG+ +    G
Sbjct: 128 EGVEVRQVCAVGV------LLVVFEGLDKNSERG 149

[Close]
BLAST of Bhi09G001042 vs. ExPASy TrEMBL
Match: A0A443N7Y5 (Mitochondrial import inner membrane translocase subunit Tim21 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00298000 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.3e-05
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 78  GEEGLRSDHASGGGVDGPGNPAAGARRRGEEGNGERGIFGIVSPVEEGVEMGEILA 134
           G++GLR +HA  G VD PG+PA G    G EG GE GI G+V PVE G+E+GEI+A
Sbjct: 3   GDKGLRPNHAFRGRVDSPGDPAVGMGWGGLEGEGEGGIGGVVGPVEGGIELGEIVA 58

The following BLAST results are available for this feature:
BLAST of Bhi09G001042 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001042 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001042 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6W31.7e-3764.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368160 PE=4 SV=1[more]
A0A6A4M0442.3e-0741.56Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A443N7Y58.3e-0557.14Mitochondrial import inner membrane translocase subunit Tim21 OS=Cinnamomum micr... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001042Bhi09M001042mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0015031 protein transport
cellular_component GO:0005743 mitochondrial inner membrane