Bhi09G001035 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001035
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr9: 30726326 .. 30726834 (+)
RNA-Seq ExpressionBhi09G001035
SyntenyBhi09G001035
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGCAGGTTGAGTGACGATTACGAGGGCTTAGTCCAAGAGAATATCAAGATCAGTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGATGGACACTCAATAGGGAGGTAAGTTCCCTAACTAGTGATGTTGATAACCTAAGTTTGTGGAAGGTGAACTCCATGAGCTTCATAAGAAGCTCGACGACATACGTGTTGAATGTCGGGACAATCGAAGAGCTAGTCATTAATATGCATTTACTAGCTCCCCATTCGCTGCGACCGTGCATGGCATTCATGGATTGAAGGTGCCAAAACTCAGCACATACGATGGCACATATAGTTCCATGATGGTGGAAAACTCCATCTTCAGCCTAGAACAATACTTTGAAGTCGTCAGTGTCGTTGAGGACGGTGCTAAAATTGCCAATGCACCAAACTTCCTACGTGCAGCAGCCCAATTGTGGTGGCGTAGAAAATATGCAGAACAGGAATGTGGCTTATGCACATTGCGAATGTGGGAATAA

mRNA sequence

ATGGTTGGCAGGTTGAGTGACGATTACGAGGGCTTAGTCCAAGAGAATATCAAGATCAGTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGATGGACACTCAATAGGGAGGTGCCAAAACTCAGCACATACGATGGCACATATAGTTCCATGATGGTGGAAAACTCCATCTTCAGCCTAGAACAATACTTTGAAGTCGTCAGTGTCGTTGAGGACGGTGCTAAAATTGCCAATGCACCAAACTTCCTACGTGCAGCAGCCCAATTGTGGTGGCGTAGAAAATATGCAGAACAGGAATGTGGCTTATGCACATTGCGAATGTGGGAATAA

Coding sequence (CDS)

ATGGTTGGCAGGTTGAGTGACGATTACGAGGGCTTAGTCCAAGAGAATATCAAGATCAGTGTTGCTGCAAAAGAGATGATCATGGAGCTTGGATGGACACTCAATAGGGAGGTGCCAAAACTCAGCACATACGATGGCACATATAGTTCCATGATGGTGGAAAACTCCATCTTCAGCCTAGAACAATACTTTGAAGTCGTCAGTGTCGTTGAGGACGGTGCTAAAATTGCCAATGCACCAAACTTCCTACGTGCAGCAGCCCAATTGTGGTGGCGTAGAAAATATGCAGAACAGGAATGTGGCTTATGCACATTGCGAATGTGGGAATAA

Protein sequence

MVGRLSDDYEGLVQENIKISVAAKEMIMELGWTLNREVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWRRKYAEQECGLCTLRMWE
Homology
[Close]
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 33  TLNREVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWR 92
           T N +VPK  TY+GT ++ MVEN +F LEQY++ + +++DGAKIANAPNFLR +AQLWWR
Sbjct: 87  THNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKIANAPNFLRESAQLWWR 146

Query: 93  RKYAEQECGLCTLRMWE 110
           RK+AE E     L+ WE
Sbjct: 147 RKHAEWEKDRTILQTWE 163

[Close]
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match: A0A2U1PL38 (Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA095360 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 37  EVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWRRKYA 96
           +VPK   Y+GT ++ +VEN +F LEQYFE + V ED A+I+NAP FLR +AQLWWRRK+ 
Sbjct: 169 KVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQLWWRRKHH 228

Query: 97  EQECGLCTLRMWE 110
           E+E G+C L  W+
Sbjct: 229 EREKGICDLNTWD 241

[Close]
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match: A0A2U1NEZ9 (Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA274570 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-16
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 37  EVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWRRKYA 96
           +VPK   Y+GT ++ +VEN +F LEQYFE + V ED A+I+NAP FLR +AQLWWRRK+ 
Sbjct: 83  KVPKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPTFLRESAQLWWRRKHH 142

Query: 97  EQECGLCTLRMWE 110
           E+E G+C L  W+
Sbjct: 143 EREKGICDLNTWD 155

[Close]
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match: A0A5A7SY30 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00560 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 0 

Query: 33  TLNREVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWR 92
           T N +VPK   Y+GT ++ MVEN +F LEQY++ + +V+DGAKIANAPNFL  +AQLWW 
Sbjct: 87  THNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKIANAPNFLHESAQLWWH 146

Query: 93  RKYAEQECGLCTLRMW 109
           RK+AE E     L  W
Sbjct: 147 RKHAEWEKDRTILHTW 162

[Close]
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match: A0A2U1LHQ1 (Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA489850 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 37  EVPKLSTYDGTYSSMMVENSIFSLEQYFEVVSVVEDGAKIANAPNFLRAAAQLWWRRKYA 96
           +V K   Y+GT ++ +VEN +F LEQYFE + V ED A+I+NAP FLR + QLWWRRK+ 
Sbjct: 54  KVSKPDMYNGTRNATLVENFLFGLEQYFEAMGVDEDAARISNAPAFLRESVQLWWRRKHH 113

Query: 97  EQECGLCTLRMWE 110
           E+E G+C L  W+
Sbjct: 114 EREKGICDLNTWD 126

The following BLAST results are available for this feature:
BLAST of Bhi09G001035 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001035 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001035 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2W82.2e-1758.44Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A2U1PL387.2e-1656.16Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA... [more]
A0A2U1NEZ97.2e-1656.16Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA... [more]
A0A5A7SY306.1e-1555.26Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A2U1LHQ13.0e-1453.42Retrotrans_gag domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001035Bhi09M001035mRNA