Bhi09G001006 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001006
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionLOB domain-containing protein 29
Locationchr9: 29497615 .. 29497872 (-)
RNA-Seq ExpressionBhi09G001006
SyntenyBhi09G001006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTAAGAGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCCTACGAAAAATCTCCATTTTATTCTGACGACCCATTACTAGATCTTCAAACTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAGCCTGCCGCGGTGCCGTACGTTGAGATGAGTGTCGTCGATTCAAATCTCGCCGGAAATTTCTGTTACTAA

mRNA sequence

ATGAATCTAAGAGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCCTACGAAAAATCTCCATTTTATTCTGACGACCCATTACTAGATCTTCAAACTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAGCCTGCCGCGGTGCCGTACGTTGAGATGAGTGTCGTCGATTCAAATCTCGCCGGAAATTTCTGTTACTAA

Coding sequence (CDS)

ATGAATCTAAGAGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCCTACGAAAAATCTCCATTTTATTCTGACGACCCATTACTAGATCTTCAAACTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAGCCTGCCGCGGTGCCGTACGTTGAGATGAGTGTCGTCGATTCAAATCTCGCCGGAAATTTCTGTTACTAA

Protein sequence

MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAGNFCY
Homology
[Close]
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-33
Identity = 75/85 (88.24%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1   MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSPF-YSDDPLLDLQTWLLAESCSAAA 60
           MNLRAQVAYLREQAAQILLNNYTTRNP EL YEKSPF YSDDP LDLQ+WLLAESCSA A
Sbjct: 99  MNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATA 158

Query: 61  PEFEPAAVPYVEMSVVDSNLAGNFC 85
           PE EPAAVPY EMSVVDS LAG+FC
Sbjct: 159 PELEPAAVPYFEMSVVDSKLAGDFC 183

[Close]
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 1   MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSP-FYSDDPLLDLQTWLLAESCSAAA 60
           MNLRAQVA LREQAAQILLNNYTTRNP ELPYEKSP +YSDDP LDLQ+WLLAESC+ AA
Sbjct: 99  MNLRAQVACLREQAAQILLNNYTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAA 158

Query: 61  PEFEPAAVPYVEMSVVDSNLAGNFC 85
           PEFEPAA+PY EMSVV+S LAG+FC
Sbjct: 159 PEFEPAAIPYFEMSVVNSKLAGDFC 183

[Close]
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1   MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSPF-YSDDPLLDLQTWLLAESCSAAA 60
           MNLRAQVA LREQAAQILLNNYTTRN  ELPYEKSPF YSDDP LDLQ+WLL ESC+AAA
Sbjct: 99  MNLRAQVACLREQAAQILLNNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAA 158

Query: 61  PEFEPAAVPYVEMSVVDSNLAGNFC 85
           PEFEPAAVPY EMSV+DS LAG+FC
Sbjct: 159 PEFEPAAVPYFEMSVIDSKLAGDFC 183

[Close]
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 1   MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAP 60
           MNLRAQVAYLREQAAQILLN Y TRNP EL Y  S  YSD+ LLDLQTWLL ESCS AAP
Sbjct: 101 MNLRAQVAYLREQAAQILLNGYITRNPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAP 160

Query: 61  EFEPAAVPYVEMSVVDSNLAGNFC 85
           EFEP A PYVEM + DSNLAG+FC
Sbjct: 161 EFEPTAAPYVEMGIADSNLAGDFC 184

[Close]
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match: A0A6J1H9E4 (LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460814 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.1e-27
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 1   MNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAP 60
           +NLRAQVAYLREQAAQI+LN Y TRNP EL Y  S  YSD+ LLDLQTWLL ESCS AAP
Sbjct: 98  VNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAP 157

Query: 61  EFEPAAVPYVEMSVVDSNLAGNFC 85
           EFEP A PYV+M V DSNLAG+FC
Sbjct: 158 EFEPTAGPYVQMGVADSNLAGDFC 181

The following BLAST results are available for this feature:
BLAST of Bhi09G001006 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001006 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi09G001006 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5D46.6e-3388.24LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV... [more]
A0A5D3D1792.5e-3284.71LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3BGZ52.5e-3285.88LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV... [more]
A0A6J1KRG73.7e-2878.57LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800... [more]
A0A6J1H9E47.1e-2776.19LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001006Bhi09M001006mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus