Bhi09G000807 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000807
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionU1 small nuclear ribonucleoprotein C
Locationchr9: 22139288 .. 22142860 (-)
RNA-Seq ExpressionBhi09G000807
SyntenyBhi09G000807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGAACTAAATCAAACCGAACCAACCCGCCGGCTAAAAAATTCGAATCGGAAAATAAACTTGATATCTTCTTTAGAGAAAAGACCAGAAGCTTCTCTCTCTTCTTCTCGTTCTCGCAGAATCGCCGATAGGGTTTTGGTTGGGTTTGCCATTGTTGCTCCTTCTTTGAGCTCTACAGCGCTATGCCTCGGTTCGTTCTTCCATATCCTTCTTCTTCTAACCCTCATTACTTTATCCTTCAATCAAATTTATACATCTCTCCATGTTTCACTCTATAGTCAGTGATGTGATCTCGTTGTATATATGCAGGTATTACTGTGACTATTGCGATACATATCTTACCCATGATTCTGTAAATTCTCTTCTTCTTATCTTCAGATGACAATGCCGTTTCCTTTTCGTTTGATTATTGCCCTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTACTTTTTCATTTTGGCGTTTTCTTCGTTGATGCTGCAGTTGCTCGTCTTTATGATGAGTAATGTTTTTAGGTAATTGATTTTTAATTTTGAATGTACATATAAGTTGTTCGAAGAAATTGTAGGAGATTTTGGATTGATTTGACTGTGGTAGCTGTTGGGATTGGAGCGAATGATGAAGCAAATCGACTGTGTATTGTTTTTTTCCGTATATATCATGATGTTTGTGTGTATAAATGTGTTTTAAGAGAGGCTAGAACTTATGTTGGTAATTGGAAAGTTACAATGTTAATGATAAGAAGGCTTCTCATTTAGACTTAAATCTAAAGCAACAAATAATTGCGAAAGTTTCGGAGAGAGCACTCCAAGAAGCTGTATAGTTCTTATCACAGTGATTTTCTCTCTCTATTTTTGGAGCTATGATATATTTAAGACCAAATATAACTTGAAACACAGAACTACCATGGATTGATTCAGTGAATTGAGGTTGAGGTTAAGGAAGAAAGTGAGTTTAGAAGCTATTGGTTGAAAAACTATTGTTACCCCCTACTCAAGACTCAAAATTCTATGATTTTCCTTAGCAGCCAAATGTTGTAGGGTGAGATGGTTGTGGTTTGATGTTAGTTGAGGTGTGCAAAACGAGACTTAGACACTCGATAACCAAAAAAGAAAAGAAACCCTAAATTATGGCTACTTAGTAAAACTCGATTTCAAGTGGAATGTGCCAAACCTTTGGTTTTGTTGAAACTAAGGGTCCGTTTGGATTGAATGAAGAAAAAAATGTTTTTCAAAAAACTCGTTTTTATTTAAACACTTTTGATAAAAACTAATTAAAATGCACTTAAAAAGCTATTTTAAGTGGTTGTCAAACACTCAAATTTCTTCCAAAATGACTTATTTTTTAAACTAAACACTTGAAAACGTATTATAAACACACCCTAGATTGGCTTGCACAAGTAATGGCTTGTTTCAATTATACTTGATTCTTGCTTTCTACATGCAATAATATTTAGTTCCTTAGCAATTTCTGTGTGTGTGCGCTTTTATTTTATTTTATTATTATTATTATTTTTTTTTTTTTTGGGGGGGGTTGGGATTTGTGGGGCAGACTTCAAATTTTTGGACATGTTTGTCATTTATTGTGTTAGTAAGGCTTAATATTGCTCGTATTTTTTCAAAAAATTATTTATTTTTGGTGTCTCAGCCATCAGTGAGGAAGCAGCATAATGCAGGTTACAAACATAAGGTATTTTAATATTGGCCACGTTACAATTTAGTATATAATTCCCTATTCCGAGGGGGTTGAGTTTTTTGGGCCAGTTTAGAAATTGAATTTAATAGTAATTTGATGTTTTTAAGAACATACCACTTTCAAACTAAGAAGAACTTGGTTGGTTTCTTGGTTGTGGTTTTAGAAACACATAAAAAGGGGAAAAGTTAACTGTTAGAGCCTAGAGGCAAGATTTTATTGTTTTATAGGATTGCTTTCTGTTTACTGGAATACAATCAAGATTATGATTAGTATCTTTAAGTATATTGTAATTATAACTTTCATATCATTAAATAAAAAGACAAAATTGAACGAACTGTGGAAATATTAAAAATATCTTTTTTCAGTTCATTTATCCGACAACCCTTTTTAAAGAAAATTCTTAGTTATTTATTCATGGATGCACTCCAGGCAAATGTGCGATCATACTATCAACAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCGGCATTCCAACAGGTTGGTGCAGCTTATAATCAGCATTTACTTGGCCAAAGACCCCGTCTTCCTGTACTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATAAGGCCTCCAGTTTTGCCTAGACCAGTTCCTGGTGCTCCAGGTAATTCACAGATTTGATATGTTTCAGATGTAGCAATTTTTTTAATGCATATCCCTTTGACTTTGATTGTGTTATTTCACAATTTGCATTTCAAACTACTAAAACCACTTGTTATGCTTTTTGTCTCAGTAAAAAACTTGAATAGTGGAGATATTTGACATAATAAGTGCCAAATTAGGATTTGGCATATCTCTGTCTAGTTAAAATTTGCTATCTATTGGTACCGAAATGATGTTTAGTCTTTTTTCTCAACAAAAAAATGACGAAACTTTGTTAAAGCATGACATGGAAGATGAGAGAACGATGTGGATTTTTTGGCCATGTTCTAATGAAGTTTCATCCTTAGCATGTTGAAAGAAGGAACAAACATTTCAATAAAGGAAATCGTTTTAACCACACATTGTACTACTATCTCTTGAAGCTGCTTAATTCAACTAAACCTCAAAATTTCGATTTTCCAGTTTTTTGCCTCGTAGTAAACCAAATCAACCAACTAGTATACTTCAAACCAACCAAACCGATTCATGTCAGTATCTATAGATTTTGGCTCGTGCCTCTAGTCATTACTGGATGGAATTTAAACCAATATAGCAGGTATTTAAGCATTAATATCAAATTGATTGAACTCCTGACCTCTGTCACTGTAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAACATTCCTGCTAGGCCGCCTCCTCCAGCTCCAGTTCCAGGGAGCGCACCTCAACCTTCTTCAACAAATGGTGCACCGTTGGCTCCACCATCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGAGAGTTTCACCACCATGGCTCAACCTTCTGAGCCTAACCATTAGAGCTTGTACTTGTGCTGTTTGTGTATGATATCCAAAAGCTCTTCTAATGCAAACCGTGACTCAATATTTTAAAAAACCTGAAGAAAAATTTGGAGCCTTCGAGATTAAATGTAGAAAAGTTATTTCTAAGTGAGCAAAGGAAATAATTCTGGTGGTTGATTCATTGCTACTTGTTTGGAGGTAGAATACATAGTGTGATTACATGATTAAATGGGCAATTCTGAATCCGTTAAACGATGGATTCACTTTTAGTTTTCTTTATGCAATTTCAAGTTTTTGAGAATTGAATTTACTTGATCA

mRNA sequence

CGAGAACTAAATCAAACCGAACCAACCCGCCGGCTAAAAAATTCGAATCGGAAAATAAACTTGATATCTTCTTTAGAGAAAAGACCAGAAGCTTCTCTCTCTTCTTCTCGTTCTCGCAGAATCGCCGATAGGGTTTTGGTTGGGTTTGCCATTGTTGCTCCTTCTTTGAGCTCTACAGCGCTATGCCTCGGTATTACTGTGACTATTGCGATACATATCTTACCCATGATTCTCCATCAGTGAGGAAGCAGCATAATGCAGGTTACAAACATAAGGCAAATGTGCGATCATACTATCAACAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCGGCATTCCAACAGGTTGGTGCAGCTTATAATCAGCATTTACTTGGCCAAAGACCCCGTCTTCCTGTACTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATAAGGCCTCCAGTTTTGCCTAGACCAGTTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAACATTCCTGCTAGGCCGCCTCCTCCAGCTCCAGTTCCAGGGAGCGCACCTCAACCTTCTTCAACAAATGGTGCACCGTTGGCTCCACCATCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGAGAGTTTCACCACCATGGCTCAACCTTCTGAGCCTAACCATTAGAGCTTGTACTTGTGCTGTTTGTGTATGATATCCAAAAGCTCTTCTAATGCAAACCGTGACTCAATATTTTAAAAAACCTGAAGAAAAATTTGGAGCCTTCGAGATTAAATGTAGAAAAGTTATTTCTAAGTGAGCAAAGGAAATAATTCTGGTGGTTGATTCATTGCTACTTGTTTGGAGGTAGAATACATAGTGTGATTACATGATTAAATGGGCAATTCTGAATCCGTTAAACGATGGATTCACTTTTAGTTTTCTTTATGCAATTTCAAGTTTTTGAGAATTGAATTTACTTGATCA

Coding sequence (CDS)

ATGCCTCGGTATTACTGTGACTATTGCGATACATATCTTACCCATGATTCTCCATCAGTGAGGAAGCAGCATAATGCAGGTTACAAACATAAGGCAAATGTGCGATCATACTATCAACAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCTGCGGCATTCCAACAGGTTGGTGCAGCTTATAATCAGCATTTACTTGGCCAAAGACCCCGTCTTCCTGTACTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTAATGCCTGGAATAAGGCCTCCAGTTTTGCCTAGACCAGTTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCCCCACCCGGAGCTCCTATGCCTGGCCAAGTGAACATTCCTGCTAGGCCGCCTCCTCCAGCTCCAGTTCCAGGGAGCGCACCTCAACCTTCTTCAACAAATGGTGCACCGTTGGCTCCACCATCAATGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGAGGGTATGAGAGTTTCACCACCATGGCTCAACCTTCTGAGCCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAPTMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSGGYESFTTMAQPSEPNH
Homology
[Close]
BLAST of Bhi09G000807 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 123/198 (62.12%), Postives = 136/198 (68.69%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPVPGAPGYLPA 120
              +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPM-PGQVNIPARPPPPAPVPGS-------APQPSSTNGAP-----LAP 180
           P +P MMAPPGAP+ P   N   RPP  AP+PG        AP P    G P     L P
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSMYQANPAAPGSGGYES 185
           P  Y  NPAAP SG + +
Sbjct: 181 PPPYHTNPAAPPSGNFNN 190

[Close]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 9.1e-67
Identity = 153/215 (71.16%), Postives = 164/215 (76.28%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMP--GAAP-----GLMPGIRPPVLPR 120
            AAFQQVGAAYNQHL+       RPRLPVLPTP MP  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PVPGAPGYLPAPTMPPMMAPPGA---PMPGQVNIPARPP----PPAPVPGSAPQPSSTNG 180
           PVPGAPGY+PAP MP MMAPPGA   PMP   ++P RPP    PPA VPGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAPPSMYQANPAAPGSGGYESFTTMAQPSEPNH 197
             +    MYQANPA P SGG++SF   AQ  E NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

[Close]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.1e-51
Identity = 138/230 (60.00%), Postives = 152/230 (66.09%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGAAP--GLMPGIRPPVLPRP---- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP   P   LMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 VPGAPGYLPAPTMPP-MMAPPGAPMPGQVNIPARPP-------PPAPVPGSAPQPSS-TN 180
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GAPL----APPSMYQANPAAPG---SGGYESFTTMAQ-------PSEPNH 197
           GAP+    APP++YQANP AP    SG   +  T  Q       PSE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-50
Identity = 138/238 (57.98%), Postives = 150/238 (63.03%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGA---APG--LMPGIRPPVLPRPV 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP     APG  LMPG+RPP+L  P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPIL--PA 120

Query: 121 PGAPGYLPAPTMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAP---------------Q 180
           PG PGY   P  PP M  PGAP PG +  P  PP   P PG+ P                
Sbjct: 121 PGIPGY---PGGPPTMLQPGAP-PGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTL 180

Query: 181 PSSTNGAP-------LAPPSMYQANPAAPG---SGGYESFTT-------MAQPSEPNH 197
           P  T+G P        APP++YQ NP AP    SG   +  T        AQPSE NH
Sbjct: 181 PPPTSGVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-50
Identity = 123/198 (62.12%), Postives = 136/198 (68.69%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPVPGAPGYLPA 120
              +QQVGA +NQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPM-PGQVNIPARPPPPAPVPGS-------APQPSSTNGAP-----LAP 180
           P +P MMAPPGAP+ P   N   RPP  AP+PG        AP P    G P     L P
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSMYQANPAAPGSGGYES 185
           P  Y  NPAAP SG + +
Sbjct: 181 PPPYHTNPAAPPSGNFNN 190

[Close]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match: Q32PA0 (U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-18
Identity = 67/153 (43.79%), Postives = 82/153 (53.59%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG-AAPGLMPGIR---PPVLPRPVPGAPGY 120
            AAFQQ                 + P P +PG   PG+MP      PP++P   P  PG 
Sbjct: 61  TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM 120

Query: 121 LPAPTMPPMMAPPGAPMPGQVNIPARPPPPAPV 150
           +P    P M  P G  MP     P   PP  P+
Sbjct: 121 MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM 146

[Close]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.3e-96
Identity = 185/197 (93.91%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYESFTTMAQP-SEPNH 197
           GY+SFT+MAQP SE NH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.7e-96
Identity = 184/197 (93.40%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYESFTTMAQP-SEPNH 197
           GY+SFT+MAQP SE NH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.7e-96
Identity = 184/197 (93.40%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYESFTTMAQP-SEPNH 197
           GY+SFT+MAQP SE NH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 180/195 (92.31%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRPVPGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAP+PGS  QPSSTNGAPL  P  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 GYESFTTMAQPSEPN 196
           GY+SFTTMAQPSE N
Sbjct: 181 GYDSFTTMAQPSESN 195

[Close]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.5e-93
Identity = 179/195 (91.79%), Postives = 184/195 (94.36%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180
           TMPPMMAPPGA MPGQVN+P+RPPPPAP+PGS PQ SSTNGAPL  P  YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYESFTTMAQPSEPN 196
           GY+SFTTMAQPSE N
Sbjct: 181 GYDSFTTMAQPSESN 195

The following BLAST results are available for this feature:
BLAST of Bhi09G000807 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.11.4e-5162.12C2H2 and C2HC zinc fingers superfamily protein [more]
BLAST of Bhi09G000807 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ269.1e-6771.16U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW44.1e-5160.00U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
C5XZK62.0e-5057.98U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q56XE42.0e-5062.12U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
Q32PA02.7e-1843.79U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2[more]
BLAST of Bhi09G000807 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5153.3e-9693.91U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW25.7e-9693.40U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS925.7e-9693.40U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1KWY51.5e-9392.31U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890... [more]
A0A6J1H7P84.5e-9391.79U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 1.4E-12
score: 57.8
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..195
e-value: 5.9E-40
score: 136.3
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..180
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..167
score: 11.930532
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 5.3E-22
score: 77.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..61
e-value: 4.5E-30
score: 105.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..196
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..180
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.522273
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000807Bhi09M000807mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding