Bhi09G000661 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000661
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Transcription factor UPBEAT1
Location	chr9: 17976749 .. 17977901 (-)
RNA-Seq Expression	Bhi09G000661
Synteny	Bhi09G000661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATTTAAGAATAATATAGAATGCATGAAATGAAATAATGTATCGTTAAATGACGTGTCAAATGCTGGATAGAGAGAATATGTACTAGTATTTTTTTTTTCCATTTCTCCCTCTTTCTTGGCTCCTTCTCTTTTCTTTTCTTTTTTCCCATCTTATCCTCTCTCTTTCTTCACCAACCCATTTCATAAATTCTCCCATATAAATCCCTCTATCACTCATTGGCTTCATCATCCAAAATCCCAAATCAACAAACCCCATTTTCCCGTTTCTCTTTCTCTAGTTTCCTCACCACAAGAGAGAGAAAAAAACACAAATGGGAGTTTCCCAAGAAACACTTTTGCAAATTCAACTCAACATGGAAGATCAAACAATACAAGATCACATCATCATCATCAAAGAGAGGAACAACTCAAATGAATCCATATGGAAGAAATCATCAATGGATCAAGAAAAAGATCAAGAAGAAAATAGCAAAGGCAAATCCAAAAGTTGCAATAATACAACAGCAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAAAGGAGATCAAGAAGATCATCATCTAAAAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCGAACATGAACAACAACAATGACAACCACGACAACGATGGAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCTTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTTCTATTGATGAGTGAGATAATTTGAAAAGAGTTTCATTTTTTATTTTATATATATATATGTGTTGAATATGTGTAAAACTCATTTCATCATCTCTCTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTTTGTTGGGGGGTTCTTTTTCTCTCACTTTTGCTTTATTTATTTGTATTTTGCATGTCTCTCCTCTGTAGTTTTAGAGAGAGAGATTTAACTTTGATCTTTTTTTTTTTTTTTTGGGTGTGTGGAAAAGATTTGACCTTTTGATTATAAGTTATTTAGGGACATTGGGTAGTTAATTAAGAACTTCTGTTTTTTTTTTTTCCCTCTTCTTCTCATTTGTAATATTAT

mRNA sequence

AAAATATTTAAGAATAATATAGAATGCATGAAATGAAATAATGTATCGTTAAATGACGTGTCAAATGCTGGATAGAGAGAATATGTACTAGTATTTTTTTTTTCCATTTCTCCCTCTTTCTTGGCTCCTTCTCTTTTCTTTTCTTTTTTCCCATCTTATCCTCTCTCTTTCTTCACCAACCCATTTCATAAATTCTCCCATATAAATCCCTCTATCACTCATTGGCTTCATCATCCAAAATCCCAAATCAACAAACCCCATTTTCCCGTTTCTCTTTCTCTAGTTTCCTCACCACAAGAGAGAGAAAAAAACACAAATGGGAGTTTCCCAAGAAACACTTTTGCAAATTCAACTCAACATGGAAGATCAAACAATACAAGATCACATCATCATCATCAAAGAGAGGAACAACTCAAATGAATCCATATGGAAGAAATCATCAATGGATCAAGAAAAAGATCAAGAAGAAAATAGCAAAGGCAAATCCAAAAGTTGCAATAATACAACAGCAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAAAGGAGATCAAGAAGATCATCATCTAAAAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCGAACATGAACAACAACAATGACAACCACGACAACGATGGAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCTTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTTCTATTGATGAGTGAGATAATTTGAAAAGAGTTTCATTTTTTATTTTATATATATATATGTGTTGAATATGTGTAAAACTCATTTCATCATCTCTCTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTTTGTTGGGGGGTTCTTTTTCTCTCACTTTTGCTTTATTTATTTGTATTTTGCATGTCTCTCCTCTGTAGTTTTAGAGAGAGAGATTTAACTTTGATCTTTTTTTTTTTTTTTTGGGTGTGTGGAAAAGATTTGACCTTTTGATTATAAGTTATTTAGGGACATTGGGTAGTTAATTAAGAACTTCTGTTTTTTTTTTTTCCCTCTTCTTCTCATTTGTAATATTAT

Coding sequence (CDS)

ATGGGAGTTTCCCAAGAAACACTTTTGCAAATTCAACTCAACATGGAAGATCAAACAATACAAGATCACATCATCATCATCAAAGAGAGGAACAACTCAAATGAATCCATATGGAAGAAATCATCAATGGATCAAGAAAAAGATCAAGAAGAAAATAGCAAAGGCAAATCCAAAAGTTGCAATAATACAACAGCAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAAAGGAGATCAAGAAGATCATCATCTAAAAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCGAACATGAACAACAACAATGACAACCACGACAACGATGGAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCTTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTTCTATTGATGAGTGA

Protein sequence

MGVSQETLLQIQLNMEDQTIQDHIIIIKERNNSNESIWKKSSMDQEKDQEENSKGKSKSCNNTTARRRRRSRSNSLILKRRSRRSSSKRIEQRVNTLRNLVPNMNNNNDNHDNDGSCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSSIDE

Homology

[Close]

BLAST of Bhi09G000661 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-42
Identity = 127/169 (75.15%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMED-QTIQDHIIIIKE--RNNSN-ESIWKKSSMDQEKDQEENSKGK 60
           MGVSQETLLQIQLNMED QT QD II IKE   NNSN +S WKK+SM +E+ QE NSKGK
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  --SKSCN-NTTARRRRRSRSNSLILKRRSRR---SSSKRIEQRVNTLRNLVPNMNNNNDN 120
               +CN NT    RRRSRSNSLILK+RSRR   SSS RIEQRVNTLR+LVPN N+N+++
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPN-NDNHNH 120

Query: 121 HDNDGSCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSSIDE 160
            D D SCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS P SSSIDE
Sbjct: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDP-SSSIDE 167

[Close]

BLAST of Bhi09G000661 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.5e-41
Identity = 132/177 (74.58%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMED-QTIQDHIIIIKE-RNNS--NESIWKKSSM----DQEKDQEEN 60
           MGVSQETLLQIQLNMED +T QD IIIIKE RN+S  ++SIWKK SM     +E+DQE N
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  SKGKSKS-CNNTTARR--RRRSRSNSLILKRRSRRSSS-----KRIEQRVNTLRNLVPNM 120
           SKGK KS CNN   RR  RRRSRSNSLILK+RSRRSSS      RIEQRVN LRNLVP  
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVP-- 120

Query: 121 NNNNDNH-DNDGSC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSSIDE 160
             NNDNH D+D SC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS P SSSIDE
Sbjct: 121 --NNDNHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDP-SSSIDE 172

[Close]

BLAST of Bhi09G000661 vs. ExPASy TrEMBL
Match: W9QCV4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009723 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04
Identity = 56/154 (36.36%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDQTIQDHIIIIKERNNSNESIWKKSSMDQEKDQEENSKGKSKSC 60
           MG+SQ +LL++ L   D+   + II   E  + N +I   SS+    +Q    +  S+S 
Sbjct: 1   MGISQYSLLEVPL---DELKSNSIIQGNEDQHGNSNIIGSSSL---WNQRLKRRVVSRSS 60

Query: 61  NNTTARRRRRSRSNSLILKRRSRRSSSKR---IEQRVNTLRNLVPNMNNNNDNHDNDGSC 120
            + T R +R  R   +++KRR   +S +R   + +RV TL+ L+PN  +           
Sbjct: 61  VHMTPRSKRPKR---IVMKRRRLGASRRRANGVVRRVRTLKRLIPNSES----------- 120

Query: 121 VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG 152
           VG+L+ LF +TADYIL LQ RVR+M+ +V VLSG
Sbjct: 121 VGTLDGLFRETADYILCLQMRVRVMQIVVKVLSG 134

The following BLAST results are available for this feature:

BLAST of Bhi09G000661 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000661 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	5.0e-42	75.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	2.5e-41	74.58	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
W9QCV4	9.2e-04	36.36	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_009723 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..87
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 12..151
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000661	Bhi09M000661	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated